ID FJ751233; SV 1; circular; genomic DNA; STD; VRL; 2756 BP. XX AC FJ751233; XX DT 13-MAR-2011 (Rel. 108, Created) DT 29-AUG-2012 (Rel. 113, Last updated, Version 2) XX DE African cassava mosaic virus-cotton clone ACMV-Punc19, complete genome. XX KW . XX OS African cassava mosaic virus-cotton OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RC Publication Status: Online-Only RP 1-2756 RX PUBMED; 22899988. RA Nawaz-Ul-Rehman M.S., Briddon R.W., Fauquet C.M.; RT "A melting pot of old world begomoviruses and their satellites infecting a RT collection of gossypium species in pakistan"; RL PLoS One 7(8):E40050-E40050(2012). XX RN [2] RP 1-2756 RA Khan M., Fauquet C.; RT "African cassava mosaic virus DNA-A component infects non-cultivated exotic RT cotton species in Pakistan"; RL Unpublished. XX RN [3] RP 1-2756 RA Khan M., Fauquet C.; RT ; RL Submitted (13-FEB-2009) to the INSDC. RL ILTAB, Donald Danforth Plant Science Center, 975 N Warson Rd, Saint Louis, RL MO 63132, USA XX DR MD5; 8b7f60e177c5d4a3e25de01035b67018. XX FH Key Location/Qualifiers FH FT source 1..2756 FT /organism="African cassava mosaic virus-cotton" FT /host="Gossypium punctatum" FT /mol_type="genomic DNA" FT /country="Pakistan" FT /collected_by="Muhammad Shah Nawaz" FT /collection_date="Nov-2006" FT /clone="ACMV-Punc19" FT /db_xref="taxon:685973" FT gene 136..528 FT /gene="AV2" FT CDS 136..528 FT /codon_start=1 FT /gene="AV2" FT /product="AV2" FT /db_xref="GOA:F0UXL5" FT /db_xref="InterPro:IPR002511" FT /db_xref="UniProtKB/TrEMBL:F0UXL5" FT /protein_id="ACZ74628.1" FT /translation="MWDPLENNCPDASLGLTWMLVIHELNGYPDTFQPSTLGHNLVRDL FT WSAIRVSYTHINCHEISAFLLHGTPVVQGCNFDSAYTNRDTACIVRAIPLPRSWINWPL FT YLKCMMYYMYTQSSHTSMVRIMRNVG" FT gene 668..1030 FT /gene="AV2" FT misc_feature 668..1030 FT /gene="AV2" FT /note="nonfunctional AV2 due to mutation; duplicate gene" FT gene complement(1044..1448) FT /gene="REn" FT CDS complement(1044..1448) FT /codon_start=1 FT /gene="REn" FT /product="replication enhancer protein" FT /note="AC3" FT /db_xref="GOA:F0UXL6" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:F0UXL6" FT /protein_id="ACZ74632.1" FT /translation="MDLRTGELITAPQAMNGVYTWEINNPLYFTITRHQQRPFLLNQDI FT ITVQVRFNHNLRKELGIHKCFLNFRIWTTLQPQTGLFLRVFRYQVLKYLDNIGVISINH FT VIRAADHVLFNVIEKTIACQLTHEIQFNVY" FT gene complement(1189..1596) FT /gene="TrAP" FT CDS complement(1189..1596) FT /codon_start=1 FT /gene="TrAP" FT /product="transcriptional activator protein" FT /note="AC2" FT /db_xref="GOA:F0UXL7" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:F0UXL7" FT /protein_id="ACZ74631.1" FT /translation="MQSSSPSQNHSTQVPIKVSHRQFKKRAIRRRRVDLVCGCSYYLHI FT NCSNHGFTHRGTHHCSSSNEWRVYLGNKQSPVFHNNQAPTTTIPAEPGHHNSPGSIQSQ FT PAEGAGDSQMFSQLQDLDDLTASDWSFLKGL" FT gene complement(1505..2581) FT /gene="Rep" FT CDS complement(1505..2581) FT /codon_start=1 FT /gene="Rep" FT /product="replication-associated protein" FT /note="AC1" FT /db_xref="GOA:F0UXL8" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:F0UXL8" FT /protein_id="ACZ74629.1" FT /translation="MRTPRFRVQAKNVFLTYPKCSIPKEHLLSFIQTLSLPSNPKFIKI FT CRELHQNGEPHLHALIQFEGKITITNNRLFDCLHPSCSTSFHPNIQGAKSSSDVKSYLD FT KDGDTVEWGQFQIDGRSARGGQQSANDAYAKALNSGSKSEALNVIRELVPKDFVLQFHN FT LNSNLERIFQEPPAPYISPFPCSSFDQVPDELEEWVADNVRASAARPWRPNSIVIEGDS FT RTGKTIWARSLGPHNYLCGHLDLSPKVFNNAAWYNVIDDVDPHYLKHFKEFMGSQRDWQ FT SNTKYGKPVQIKGGIPTIFLCNPGPTSSYKEFLDEEKQEALKAWALKNAIFITLTEPLY FT SGSNQSQSQTIQEASHPA" FT gene complement(2125..2427) FT /gene="AC4" FT CDS complement(2125..2427) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:F0UXL9" FT /protein_id="ACZ74630.1" FT /translation="MGNLTCMPSSNSRAKSRLRTIVSSIVYTQAVAPVSTPTFKVPNQA FT QMSSHTWIRTATPSNGDNFRSMDDLLEAVNSPQMMLTPKRLTAAVSQKLLMSLGN" XX SQ Sequence 2756 BP; 715 A; 600 C; 666 G; 775 T; 0 other; accggttggc cccgcccccc tttaaacgtg gtccccgcgc actatgtatg tcggccaatc 60 atgtcgtagc gttaaaggtt atttattagt ggtgggccac tatatacttg caggcgaagt 120 cgttgctagt gcgcaatgtg ggatcctctg gagaataact gtccggatgc aagcttgggg 180 cttacgtgga tgcttgtgat tcatgagtta aatggctatc cggatacatt tcagcccagt 240 actctgggcc acaatctggt tagagattta tggtcagcca tcagggtgag ctacactcac 300 attaattgcc atgagatatc tgcatttctt ctccacggta caccggtcgt gcaaggttgc 360 aacttcgaca gcgcctacac gaaccgagat actgcctgca tagtgcgcgc tattcctctt 420 ccacggtcat ggattaactg gcctctgtac ttaaagtgca tgatgtatta tatgtatact 480 cagagctccc atacctctat ggtccgaatc atgagaaacg taggatagta tttgtgagtc 540 aactgacacg caatagcttg accagtacat ggacgcgaca tgagcggttg ctcataggcc 600 ccgctcactg acgagactac ctaaattcgc cactctttcg gagtggtaac tccagacccg 660 atataaacaa tgtgggatca ctggtgaatg agtttcctga ctcggtgcat gggcttaggt 720 gtatgcttgc aattaaatat ttgcaggcct tagaggatac atacgagccc agtactctgg 780 gccacgatct ggttagagat ttagtctcag ttatcagggc tcgtaattat gtcgaagcga 840 ccaggagata tcatcatttc cactccaggc tccaaggttc gtcgaaggct gaacttcgac 900 agcccataca ggaaccgtgc tactgccccc actgtccacg tcacaaatcg aaaacgggcc 960 tggatgaaca ggcccatgta cagaaagccc atgatgtaca ggatgtatag ataagagctc 1020 cccgggctcg agggtaccgg caattaataa acattgaatt gtatttcatg agtcaactga 1080 cacgcaatag ttttttcaat tacattgaac aaaacatgat cagcagctct aattacatgg 1140 ttaattgaga taacacctat attatccaag tatttaagta cttggtatct aaagaccctt 1200 aagaaaagac cagtctgagg ctgtaaggtc gtccagatcc tgaagttgag aaaacatttg 1260 tgaatcccca gctccttccg caggttgtga ttgaatcgaa cctggactgt tatgatgtcc 1320 tggttcagca ggaatggtcg ttgttggtgc ctggttattg tgaaatacag gggattgttt 1380 atttcccagg tatacacgcc attcattgct tgaggagcag tgatgagttc ccctgtgcgt 1440 aaatccatga ttggagcagt tgatatggag gtaatatgaa cagccacaga caagatccac 1500 tctcctacgc cggatggctc gcttcttgaa ttgtctgtga ctgactttga ttggaacctg 1560 agtagagtgg ttctgtgagg gtgatgaaga ttgcattctt taatgcccag gcctttagcg 1620 cttcttgctt ttcctcgtct aggaactctt tataggacga ggttggtcct ggattgcaga 1680 ggaagatagt gggaatgcca cctttaattt gaacgggttt cccgtatttt gtgttggact 1740 gccagtcccg ctgggacccc atgaattcct taaagtgctt taggtagtgt ggatcgacgt 1800 catcaatgac gttgtaccaa gcagcattat tgaagacctt tggactaagg tccaggtgtc 1860 cacacaggta attgtgtggg cctaaagatc tggcccatat cgtcttccct gttctgctat 1920 caccttctat gacaatacta ttgggtctcc atggccgcgc agcggaagcc ctaacattat 1980 cagcgaccca ttcttcaagt tcatcaggaa cttggtcaaa ggaagaacat gggaagggag 2040 aaatataagg agctggtggc tcctggaaaa tcctttctaa attactattt agattatgaa 2100 actgaagtac aaagtccttt gggactaatt ccctaatgac attaagagct tctgacttac 2160 tgccgctgtt aagcgctttg gcgtaagcat catttgcgga ctgttgaccg cctctagcag 2220 atcgtccatc gatctgaaat tgtccccatt cgacggtgtc gccgtcctta tccaggtatg 2280 acttgacatc tgagcttgat ttggcacctt gaatgttggg gtggaaactg gtgctacagc 2340 ttgggtgtag acaatcgaag agacgattgt tcgtaatcgt gattttgccc tcgaattgga 2400 tgagggcatg caagtgaggt tccccattct gatgcagctc tctacagatt ttaatgaact 2460 tagggttaga tgggagagag agtgtttgaa tgaatgacag caggtgttct ttggggatag 2520 aacactttgg gtatgtgaga aagacattct tggcttgaac tctaaaacga ggagtcctca 2580 ttttgaccaa gtcaattgga gacactcaac tagagacact cttgagcatc tcctcctgtt 2640 aattggagac attatatagg tgtctctaaa tggcattctt gtaataagtt aaactttaat 2700 ttgaatgaaa agcctcaaaa ggcgcataac acccaagggg ccaaccgtat aatatt 2756 //