ID FJ707484; SV 1; linear; genomic RNA; STD; VRL; 4009 BP. XX AC FJ707484; XX DT 11-MAR-2009 (Rel. 100, Created) DT 07-SEP-2010 (Rel. 106, Last updated, Version 2) XX DE Soybean yellow mottle mosaic virus strain MS1, complete genome. XX KW . XX OS Soybean yellow mottle mosaic virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Gammacarmovirus. XX RN [1] RP 1-4009 RX DOI; 10.1094/PDIS-93-11-1214B. RX AGRICOLA; IND44291600. RA Li S., Moon J.S., Lee S.H., Domier L.L.; RT "First Report of Soybean yellow mottle mosaic virus in soybean in North RT America"; RL Plant Dis. 93(11):1214-1214(2009). XX RN [2] RP 1-4009 RA Li S., Moon J.S., Lee S.H., Domier L.L.; RT ; RL Submitted (04-FEB-2009) to the INSDC. RL Dept. Crop Sci., Univ of Illinois, USDA-ARS, 1102 S. Goodwin Ave., Urbana, RL IL 61801, USA XX DR MD5; 7bf03d898acbed2aad7d732b7d0aa58b. DR EuropePMC; PMC4663711; 26645042. XX FH Key Location/Qualifiers FH FT source 1..4009 FT /organism="Soybean yellow mottle mosaic virus" FT /host="Glycine max (soybean)" FT /strain="MS1" FT /mol_type="genomic RNA" FT /country="USA" FT /collection_date="18-Aug-2008" FT /note="acronym: SYMMMV" FT /db_xref="taxon:578361" FT CDS 40..2667 FT /codon_start=1 FT /transl_except=(pos:721..723,aa:OTHER) FT /transl_except=(pos:2278..2280,aa:OTHER) FT /product="P82" FT /note="replication-associated protein" FT /db_xref="GOA:C0LF85" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:C0LF85" FT /protein_id="ACN59473.1" FT /translation="MMIQFGTMPPVRIDGPPRAFSMGMALRAVGKFLVNCCSAFGDNWA FT DSITRNRTQHVCALQYFGDLPIECIVKSTGDFAREPANVTREVGNEKRVVNRHAKGYFL FT SEMVASCRLHFNGIPRSTEANLLGVRRYLATYCQEHRLTNQQTLKLVDVATPLVMTANH FT QDVVSMKLMNDPLLNLYRTLHLEAQVVHTPLRQLVARPFSGTAWSQWIDSVRGYRDPRG FT FRLAQXGCLRRVPGFNTKISRGDHPDMQITPRNGCHKVRYMGQVLGMSNGKHFGVHNSS FT LTNLRRGLIERVFYVEGPKGLQPPPKPEPGIFQESLHGFKRKLMHVVGTHSRIGHDEFV FT SLYHGRRRTIYQQAVDSLSVRSVERKDAYLSTFIKAEKIPLWKKPDPAPRVIQPRNPRY FT NVEVGCYLRKFEHHLYRGIDSIMGGPTVIKGYDVDQIGGIMEEAWNKFSDPVAIGFDMS FT RFDQHVSEDALRFEHSVYLQHFNQDPNLARLLSWQIDNKGYANLAEGKVRYKRRGCRMS FT GDMNTALGNCLLACAITWKLMSGLKFRLLNNGDDCVVITDKSNERAVCERLKHFTRYGF FT TCIAEKPVYELEHLEFCNLQPLNLGSHYTAVRKPTVSLSKDTFCVSGWNNEIDAANWLN FT AIGQCGLALSAGVPVLQSYYSALTRNFPNGKWLSKNCGKLDSGFYRLALHTMGRKPVQV FT SEVARFSFYVMTGVTPDAQVAVEKLYDNLIINRSFEPEGNAKPELDNLSSLIXWTNLPK FT GDAAEAGAGKHKGQRDLSQRISRFKLPTMPSTRHEVNHLAVITGVILLLWHIRSQSILI FT LIFDVIAPRVTNITSAILLAIFYCYSNSTASIPYISQPVTHSSTSKIVYIAVGTNPVSV FT SKHE" FT CDS 40..723 FT /codon_start=1 FT /product="P26" FT /note="replication-associated protein" FT /db_xref="UniProtKB/TrEMBL:C0LF86" FT /protein_id="ACN59472.1" FT /translation="MMIQFGTMPPVRIDGPPRAFSMGMALRAVGKFLVNCCSAFGDNWA FT DSITRNRTQHVCALQYFGDLPIECIVKSTGDFAREPANVTREVGNEKRVVNRHAKGYFL FT SEMVASCRLHFNGIPRSTEANLLGVRRYLATYCQEHRLTNQQTLKLVDVATPLVMTANH FT QDVVSMKLMNDPLLNLYRTLHLEAQVVHTPLRQLVARPFSGTAWSQWIDSVRGYRDPRG FT FRLAQ" FT CDS 2280..2486 FT /codon_start=1 FT /product="P7" FT /db_xref="GOA:C0LF87" FT /db_xref="InterPro:IPR007982" FT /db_xref="UniProtKB/TrEMBL:C0LF87" FT /protein_id="ACN59474.1" FT /translation="MDKSPQRGRSRSRSRQTQGPKGPKPENKQIQVAHHAVDKTRGKPP FT GGDHGGDFVIVAHTVTVNINFNI" FT CDS 2383..2667 FT /codon_start=1 FT /product="P10" FT /db_xref="GOA:C0LF88" FT /db_xref="UniProtKB/TrEMBL:C0LF88" FT /protein_id="ACN59477.1" FT /translation="MPSTRHEVNHLAVITGVILLLWHIRSQSILILIFDVIAPRVTNIT FT SAILLAIFYCYSNSTASIPYISQPVTHSSTSKIVYIAVGTNPVSVSKHE" FT CDS 2664..3728 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:C0LF89" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:C0LF89" FT /protein_id="ACN59476.1" FT /translation="MNGKMLTIAQLAKKEKTEGRRALSKNQRKRLDSADTRPLKEVSST FT ARVSTRRVPAAISSNVSNGVPNYAVRQNKPVIQHTELWGTLMSNSTESPAYIARTLNPS FT DPATFNWVQPLSTGYDMYRLINCEIIYTPRCATTTTGSVVLAHDPDASDANPDNVTDLL FT NMAGAVSGSVFSPLRIKPNIKQLDRYVRDNSTSDPKLVDAGKILVAAYGQQASTTPFAL FT GEVRFSYTLQLLNPQPHSTMVQRLGAAPPPGVGPTYATLRTVNGATTSSNVLTFSTAGA FT YLITAVDATAGLGTPVTTDFGRFRVQGTSAADSPLLMFGTALKSGATISFSGPVSNVLD FT VYVVRDSGVSDNSS" FT CDS 2668..3339 FT /codon_start=1 FT /product="P25" FT /db_xref="GOA:C0LF90" FT /db_xref="UniProtKB/TrEMBL:C0LF90" FT /protein_id="ACN59475.1" FT /translation="MEKCSLSPNSPRRRKQRDEELSPRTSESDSTPPTLDPSRKSVAPP FT ECQHEESPLPSRPMCPMEYRTTLFDKTNRSFSILSYGELLCLIALSPLLISLGHSTQVT FT LQHSIGCNRSPQGMICTDSLIVRSSTLPGVRLPLRDRLSWRMIQTLVMLTLITSLTCLT FT WLALSLARSSLPSGSSQTLNSSTVMFVTILLATPSWLMLARYWLQHMDSKLQQPPSPSV FT K" XX SQ Sequence 4009 BP; 1041 A; 1017 C; 1002 G; 949 T; 0 other; gggtaaccca gccagttatc caccatttaa tctttcagga tgatgatcca attcggaaca 60 atgccacctg tcagaattga tggacctcca cgagcttttt cgatggggat ggctctcaga 120 gcggttggga aattcttagt caactgttgc tctgctttcg gcgataactg ggccgacagc 180 atcaccagga accggactca acacgtctgc gcactccagt attttgggga cctccccatt 240 gagtgcatag tgaagagcac cggggacttt gcaagggaac cagccaatgt gaccagggaa 300 gtcggaaatg aaaagcgtgt tgtcaatagg cacgccaaag ggtacttcct aagtgaaatg 360 gtggcgagtt gccgattaca cttcaacggc attcctcgct ccactgaggc caatctccta 420 ggagttaggc gctacctagc aacatattgc caggagcaca ggttgaccaa ccagcagaca 480 ctgaagttgg tcgatgtcgc cacccccctt gtaatgactg ccaatcatca ggatgtggtt 540 tccatgaagt taatgaatga cccgttactg aacttgtatc ggaccttaca tttggaagcc 600 caggtggtgc acaccccact gcgacagctt gtcgcccgtc ccttctctgg gaccgcttgg 660 agccagtgga tcgactccgt taggggttat agggacccga gagggttccg gctcgctcaa 720 taggggtgcc taaggcgtgt gccagggttt aatactaaaa taagtcgtgg cgaccaccct 780 gacatgcaga tcacgcctag gaacggatgc cacaaggtaa ggtacatggg ccaggtttta 840 gggatgtcca acgggaagca ctttggagta cacaactcca gtctaaccaa ccttcggaga 900 ggtttgatcg agagggtgtt ctacgttgaa ggacccaaag ggctacagcc cccacccaaa 960 ccagagcccg gtatcttcca agagtcttta cacggtttca aacgcaagct gatgcatgtg 1020 gtcggcactc attccaggat cggacatgat gaatttgtgt ccttgtatca tggcaggagg 1080 aggaccatat accagcaggc ggttgattcc ctttctgtga gatctgtaga gaggaaggat 1140 gcttatttga gtactttcat caaagcagag aagatcccgc tttggaagaa gccagaccca 1200 gctccccgag taatccagcc gcgaaatcca agatacaacg tggaagttgg gtgctatttg 1260 agaaaatttg aacaccactt gtacagaggg atagactcaa tcatgggtgg acccactgta 1320 atcaagggct acgatgtgga ccagatcggt ggcataatgg aagaagcatg gaacaaattc 1380 tccgacccgg tcgcaatcgg gtttgacatg agtcgcttcg accaacatgt ttccgaggac 1440 gctttgcggt ttgaacatag tgtgtacttg cagcatttca accaagaccc taatttagca 1500 aggctattgt catggcagat tgacaacaaa ggatacgcca atctggctga agggaaagtg 1560 aggtacaaac gaagagggtg tagaatgagt ggtgacatga acactgcctt gggcaattgt 1620 ctattggcat gtgccatcac gtggaaactc atgtctgggc tgaagttccg gttactaaac 1680 aacggtgacg attgtgttgt tataacagat aaatcgaatg agagagccgt ttgcgaaaga 1740 ctgaagcact tcacccgata tggattcacg tgcatcgccg aaaagcccgt atacgaacta 1800 gagcatctcg agttctgcaa ccttcaacct ttgaaccttg ggagtcacta cacagcagtg 1860 cgtaagccta cagtcagtct atcaaaggac accttttgcg tgtcagggtg gaacaatgaa 1920 attgatgcag caaactggtt gaatgctatt ggacagtgtg gacttgcact gtcagccgga 1980 gtgccagtgc tacagagcta ttattccgca ttgacccgga actttccaaa tggtaaatgg 2040 ctttctaaga attgtgggaa attggatagt gggttttacc gcctagcgtt acatacgatg 2100 ggccggaagc cggttcaggt tagtgaggtt gctaggttct ccttctatgt gatgactggg 2160 gtcacccctg acgcccaggt ggctgtggag aaactgtatg acaacctgat tataaatcgt 2220 tcattcgaac cggagggtaa cgccaagccc gaacttgata atttatcttc tctcatataa 2280 tggacaaatc tccccaaagg ggacgcagca gaagcaggag ccggcaaaca caagggccaa 2340 agggacctaa gccagagaat aagcagattc aagttgccca ccatgccgtc gacaagacac 2400 gaggtaaacc acctggcggt gatcacgggg gtgattttgt tattgtggca catacggtca 2460 cagtcaatat taattttaat atttgacgta atcgccccta gggtaacaaa cataacatct 2520 gccattcttc tagccatttt ctattgctat tccaattcta ctgcaagcat tccttacatt 2580 tctcagcctg taacacactc tagcacgtct aagatagttt atatagccgt tgggacaaat 2640 cctgtttcag tcagtaagca cgaatgaatg gaaaaatgct cactatcgcc caactcgcca 2700 agaaggagaa aacagaggga cgaagagctc tctccaagaa ccagcgaaag cgactcgact 2760 ccgccgacac tcgacccctc aaggaagtca gtagcaccgc cagagtgtca acacgaagag 2820 tccccgctgc catctcgtcc aatgtgtcca atggagtacc gaactacgct gttcgacaaa 2880 acaaaccggt cattcagcat actgagttat ggggaactct tatgtctaat agcactgagt 2940 cccctgctta tatcgctcgg acactcaacc caagtgaccc tgcaacattc aattgggtgc 3000 aaccgctctc cacagggtat gatatgtaca gactcattaa ttgtgagatc atctacactc 3060 ccaggtgtgc gactaccact acgggatcgg ttgtcttggc gcatgatcca gacgctagtg 3120 atgctaaccc tgataacgtc actgacctgc ttaacatggc tggcgctgtc tctggctcgg 3180 tcttctctcc cctcaggatc aagccaaaca ttaaacagct cgaccgttat gttcgtgaca 3240 attctactag cgaccccaag ctggttgatg ctggcaagat attggttgca gcatatggac 3300 agcaagcttc aacaaccccc ttcgccctcg gtgaagtgag gttttcatac acgctccagc 3360 tgctcaaccc tcagccacat tcaactatgg tgcaacgact cggggctgcc ccacctcctg 3420 gggtcggccc cacttacgca accctgcgta cagttaatgg tgccaccaca tccagcaacg 3480 ttctcacatt ttcgactgct ggcgcctacc ttatcactgc cgttgacgct acagctgggc 3540 ttggaacccc ggtcaccact gatttcggtc ggttccgcgt acagggcact agtgctgctg 3600 actccccact actgatgttc ggcacagctc tcaagagtgg ggctaccatc tcttttagcg 3660 ggcctgtctc caacgttttg gatgtttatg ttgtgcgcga tagcggagtt agcgacaact 3720 ccagctagag cttgtaaatt tatatctttc tgaaaacccc tcacacaatc cctttacctc 3780 gatggggcca gcgtctgtca ctaggcagca tggcgaaccg acgttctagg gtaaggttgg 3840 cacctgcgtg ttagggaccc aaaaatagag tgaaattagt gtgtgtctcc cacattcgtg 3900 ggcggttgca agagccgacg taacgtatct agccagaaat ccttcgggtg gggtggttag 3960 aaacagcaaa tcttgacctg ataggccccg ggcatgcggg gcccccccc 4009 //