ID FJ670570; SV 2; linear; genomic RNA; STD; VRL; 7118 BP. XX AC FJ670570; XX DT 10-MAR-2009 (Rel. 100, Created) DT 15-NOV-2011 (Rel. 110, Last updated, Version 5) XX DE Allium virus X, complete genome. XX KW . XX OS Allium virus X OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-7118 RX PUBMED; 21938462. RA Miglino R., Druffel K.L., van Schadewijk A.R., Pappu H.R.; RT "Molecular characterization of allium virus X, a new potexvirus in the RT family Alphaflexiviridae, infecting ornamental allium"; RL Arch. Virol. 156(11):2113-2115(2011). XX RN [2] RP 1-7118 RA Miglino R., Druffel K.L., van Schadewijk T., Pappu H.R.; RT ; RL Submitted (30-JAN-2009) to the INSDC. RL Plant Pathology, Washington State University, Pullman, WA 99164-6430, USA XX RN [3] RC Sequence update by submitter RP 1-7118 RA Miglino R., Druffel K.L., van Schadewijk T., Pappu H.R.; RT ; RL Submitted (08-JUL-2011) to the INSDC. RL Plant Pathology, Washington State University, Pullman, WA 99164-6430, USA XX DR MD5; 1b3b3ff116343955de6d5491188dd9b9. XX CC On Jul 8, 2011 this sequence version replaced gi:224579234. XX FH Key Location/Qualifiers FH FT source 1..7118 FT /organism="Allium virus X" FT /host="allium" FT /mol_type="genomic RNA" FT /country="Netherlands" FT /collection_date="May-2007" FT /db_xref="taxon:317027" FT CDS 105..5210 FT /codon_start=1 FT /product="replicase" FT /db_xref="GOA:C0L9E1" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR037151" FT /db_xref="UniProtKB/TrEMBL:C0L9E1" FT /protein_id="ACN58194.1" FT /translation="MARVREALSNFTDPAVKVVLQNDHYQEFKKTMARTKLSNPYALKE FT TEADTLENLEILSNPFAIETHTHAAAKAIENDLYFVASHQLPAEPITFLFMKRNKLAQF FT RRGPQQGDIFLNKIVEPKDIARYPEDTLIDSLHVNTEVAFMGDTLHFLSFHFLGRLFHL FT NKNLQTLVATMVLPAEAKYRMASLHPNVYTLSYFGEHNFIYAPGGHHGAEYVHDFKQLD FT WLRVGRVRYKNQIITAQRIESKAANHLFVFQRGNLNTPPLRGFGTCKKYVTLPRIFLPK FT KFNTRVPIEKTLVMQIFTYVKGVAKVTERDIYAKVRQLIKTDQLQGFDASELVHIVNYF FT CFIAKQDSMTCFSDILSGSLFKKLFQPLAAFLAECKHFIFGEPDFKKLLKALQWQDITM FT VVTVADINLDSQLHDIAMNGFQALGPDVSTPERQMLPGEDDDRFAEHYPDILGFLLGKR FT DLLSYKPQTLQLSHPHKFLHSRNWRRRGWNNKGLSIFSKLHDANQPPKNQKTSPSTPPC FT LSLSKRPRPPHSQMTTWETMQNTRIRYPSPHALLHHNTKTLVLSDNSSEHGSNPFGQLH FT ARLREPVAPIPTPPPTPTSTHEPHNSECQNPGCILDTLSVDESFVELLESLPFQHADKI FT RTRRAFFFCTQPWGYGHDAIHYRTFKMPLFLSNFIQEHSLDVNSALVQCFTLNARIPFH FT KDDELCYSLVHPVHCVSTGLAKLELKRADQRSMSYHLQGPCSYTLPGNSQQAWRHAVTA FT LSQNRISVTFRKQLKPVFNTSFSTLRLLEPFMEQEAATYRTASPAPIQSDCMTGIASSG FT EPTSVHSTPDLEFATLSDTTSEGNSHEADSTDGTETSVRDASGFHVAPPPENPAPPLPW FT EQWIPKLNALGFSGLARISDPQDKDQLICPITCIKSGFGIFLPEDTDTKPFTDLLTTMH FT RMPCAYKVNNSRAKAYASDVENSRTGLLLRSQPDHWKEALTMQAETADHTIALSVIHGA FT GGSGKSHALQQLIRENPELNFLVVCPTNELRLDWLAKLPKVELHRIKTFEKALADSTAA FT TIIFGDYSKLPAGYIECYLAARPTATLAILTGDPRQSSYHESNEGAMISQLAPSTSEFG FT QYCRYYINATHRNKQDLARMLGVYSERTGLTSISMSSRPLTDTHLLVPSIIKKRTYMEL FT GYKTSTYAGCQGITAPRLQILLDCDTTLCADEVLYTALSRAVHGIHFINTGATSGAFWD FT KLNATPYLKTFLDFTREERLKESQPREQEPTEPEGPTTHFPVENEKFVLEEQVEELLEK FT HDREILRPDHGHTNCVQTEDAVIQLFSHQQAKDQALLWATIEARLKISNPKANIAEFNA FT KKEIGDVLFEHYHQAMKLPDKPIPFMEDLWVACAQEVQGTYLSKPINMLKNGEYRQSPD FT FDKNTIALFLKSQWVKKMEKLGAPKIKPGQTIASFQQSAVMLYGTMARYMRRMREAFQP FT PEIMINCEKDPQTLSHWIQNYWKFNSYAYANDFTQFDQSQDGAMLQFEILKAKHHSIPE FT WVLEGYLDIKTNAKVFSGVLSIMRLTGEGPTFDANTECNIAYTHLRFDVPKGTAQLYAG FT DDSALSCLPPERPSFADFKQQLTLTSKPALFAQKRGFWAEFCGYLITPLGIMKDPAKLA FT ATVVLAQKQNKLHECWRSHALDLKLAYVHRDALTEVLSEKQQELHQLTVRTLVKSGASE FT ILDS" FT CDS 5217..5909 FT /codon_start=1 FT /product="tgb1" FT /db_xref="GOA:C0L9E2" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:C0L9E2" FT /protein_id="ACN58195.1" FT /translation="MNTLVDTLVEAGFIRTHEPLSNPLVVHAVAGAGKSSLIRRLLETD FT ATFRAFTRGPPDPPSLDATAIQAFQPNPPSHLFNILDEYPAGEVKGPWAALFADPLQHR FT AHPRRPHFIKRCSHRLSASTAALLTSLGIPITGTGQGNFTSAHGVFEGPLIGKIISLDN FT HISLLLSNHSVPYATPDDVLGQEFPITTVISALPLHAVCDKVGLYIALSRHTSELHVLC FT PNPPHPTT" FT CDS 5872..6234 FT /codon_start=1 FT /product="tgb2" FT /db_xref="GOA:C0L9E3" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:C0L9E3" FT /protein_id="ACN58196.1" FT /translation="MSSAPIHLTPPPDHSKVFISVVVGVSIALCVFLLNKNYLPHVGDN FT LHSLPHGGTYCDGTKSINYRGPSHHTSSTTPLWAVIATLTLPLAIFLLNARRTSHHSTL FT RCGHAACASGLDSTNP" FT CDS 6152..6403 FT /codon_start=1 FT /product="tgb3" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:C0L9E4" FT /protein_id="ACN58197.1" FT /translation="MRAELLITLLSAAVTLLVLQVWTQPTPNSCYIEVNGHTAYTNCPP FT SPHLAQVVAHLKPHSHAVKFPTGLKQNDRQDCSHQCPL" FT CDS 6366..7043 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:C0L9E5" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:C0L9E5" FT /protein_id="ACN58198.1" FT /translation="MTDKTAATNVLSKAVNSNAIPFTTPKPEELSAMTFTLNNRSLPTP FT GELIAIAEQWKTLGVPGEAVTTHALQLTMFCYHSGSSPNTEITGDSATPKVTLAQLAGV FT VMQHTTLRKFCRFFAPLVWNWALDHKIPPASWQANNFPPDEKYAAFDFFDGVTNGGSML FT PADGLRRQPTPKELIAHATAQSTNIFTASQNQLQTASTHLLHTKGRFSTEPTKQYYLPG FT PEA" XX SQ Sequence 7118 BP; 1986 A; 2174 C; 1448 G; 1510 T; 0 other; gaaaacacaa accaacacga agaacctcac ttcaaacaac tcaaaacacg cccataccac 60 cgtctcagac agatcgacag cttgagaaag caagatcaag ggatatggcc cgtgttagag 120 aagccctctc caactttacc gaccctgccg tcaaggtagt tctacaaaac gaccactacc 180 aagaattcaa gaaaacaatg gcgcgcacta aactctcaaa cccgtacgct ctgaaagaaa 240 ctgaagcgga cacactcgag aaccttgaaa ttctttcgaa tccgttcgcc atagaaaccc 300 acactcatgc ggcggctaaa gcaattgaga acgacctcta ttttgtcgca tcacaccaac 360 tcccggctga gccaatcacc ttcctcttca tgaaacgcaa taagttggcg caattccgac 420 gcggccccca acaaggggac atatttttaa acaaaattgt cgaaccaaag gatattgcaa 480 gatacccgga agacaccttg attgacagtc tgcacgtcaa caccgaggta gctttcatgg 540 gtgacaccct ccatttcctc tcctttcatt tcctcggtag acttttccat ttgaataaga 600 atctacaaac tttagtggcc acaatggtcc tcccagctga agctaaatac aggatggcca 660 gccttcaccc aaatgtgtac actctctcat actttggcga acacaatttc atctacgccc 720 cgggtggcca ccatggtgcg gaatatgtcc acgacttcaa acagttagac tggctccgag 780 tcggaagagt aagatataaa aatcagataa taactgcgca gcgcattgaa tcaaaagcgg 840 ctaaccacct ctttgtcttc caacggggca acttgaacac accgccgctc aggggatttg 900 gcacatgcaa gaaatacgtc acactcccac ggattttcct tcccaagaaa ttcaatacga 960 gagttccgat cgagaagacg ctggtgatgc aaatatttac gtatgtcaaa ggagttgcga 1020 aggttaccga acgtgacatc tacgctaagg tcagacagct catcaaaact gaccagctcc 1080 aaggctttga tgccagcgaa ttagtgcata ttgtcaacta cttctgcttc atagccaagc 1140 aagactccat gacctgcttc agcgacatcc tatcaggctc cctctttaaa aaactctttc 1200 agcccctcgc cgctttcctt gctgagtgca aacattttat cttcggagaa ccagacttca 1260 agaaattgct caaagcgcta cagtggcagg acatcaccat ggtggtaaca gtcgcggaca 1320 tcaacctaga ctctcagctc cacgacattg caatgaacgg tttccaagcc cttggaccgg 1380 acgtgtcgac cccagaacgt cagatgctcc ccggtgaaga cgacgataga ttcgctgaac 1440 actaccccga catcctgggc ttcctactgg gtaaacgcga cctcttgagc tacaaacctc 1500 agacactcca gctgtcacac ccgcacaaat tcctgcacag tcggaactgg aggaggcgag 1560 gttggaacaa caaagggctc tcaatcttct cgaagctaca cgatgcaaat cagccaccca 1620 agaatcagaa aaccagccct tcgacgccac catgtctttc cctttccaag cgcccgagac 1680 cgccccactc acaaatgaca acctgggaaa cgatgcagaa cacacgcatt cggtatcctt 1740 cacctcatgc acttcttcat cacaatacga agactctggt gctatctgac aactctagtg 1800 aacacgggag caatcctttt ggccagctgc acgctcgact cagagaaccc gtagccccca 1860 taccaacgcc accaccgaca cccacctcga cgcacgagcc ccacaactcg gagtgccaga 1920 atccgggctg catcctagac actctatcgg tggacgagag cttcgtggaa ctcctcgagt 1980 ccctcccctt ccaacacgca gacaagattc gcacgcgaag agctttcttc ttctgcactc 2040 aaccatgggg ctatgggcac gatgccatac actaccgaac cttcaaaatg cccctcttcc 2100 tctcaaactt catccaagaa catagtctgg acgtcaactc tgcgctagta cagtgtttca 2160 ctctcaacgc aagaatcccg ttccacaaag atgacgagct gtgctacagc cttgtgcacc 2220 cagtgcactg tgtcagcact ggccttgcta aactcgaact gaagagggca gaccaaagat 2280 caatgtctta ccaccttcaa ggtccatgtt cttatacgct accaggcaac tcccaacaag 2340 cttggagaca cgcagtcacc gcactctcac agaaccgcat ctcagtgaca ttccgcaagc 2400 agctgaagcc agtctttaat acatcgtttt ccacgctacg actactggaa ccatttatgg 2460 agcaggaagc ggcgacatat aggaccgctt cccccgcacc cattcagagc gattgcatga 2520 ccggaattgc atcatctggg gaaccaacgt ccgtgcactc tactccagac ctggaattcg 2580 ccacactctc agacaccact tccgagggaa attcacatga agcagactcg accgacggca 2640 cggagacttc agttcgcgac gcctcaggat tccacgttgc accgccgcca gaaaacccgg 2700 ctcccccact cccctgggaa caatggatcc ctaagctgaa tgctctaggg ttctctggac 2760 tcgctcgcat tagtgaccct caggacaaag accaacttat atgcccaatt acatgcatca 2820 aatccggttt cggcatattc ctccccgagg acactgacac caagcccttc accgatttgc 2880 tcaccaccat gcaccgtatg ccctgcgcct ataaagtcaa caattccagg gcaaaagcat 2940 acgcttcgga tgttgaaaac tcgcgaacag gtctgctctt acgatcacaa cctgaccact 3000 ggaaagaggc tttaacaatg caggctgaaa cggcggacca cacgatcgca ctctcagtta 3060 tacatggagc tggcgggtca ggcaagtcac acgcccttca acagcttatc agagaaaacc 3120 ccgagctcaa tttcctggtt gtgtgcccca ccaatgaact cagactcgac tggctcgcca 3180 agctgccaaa ggtcgaatta cacagaatta agaccttcga gaaggcgcta gcagattcca 3240 cagctgccac aataatcttt ggcgactact caaaattgcc agctggctac attgagtgct 3300 acttagctgc cagacccacc gccactttgg cgatcctcac cggtgacccg agacagtcta 3360 gctaccatga gtctaatgag ggcgcgatga tttcccaact cgcaccttct accagtgaat 3420 ttggacagta ttgtaggtac tacatcaacg cgacccaccg caacaaacaa gacttggcgc 3480 gaatgctcgg cgtctactca gagcgcaccg gcctgacctc catctccatg agctcaagac 3540 cactcactga cacccacctg ctagttccgt ctatcatcaa gaagagaacc tacatggaac 3600 ttgggtacaa gacttccaca tatgctggct gtcagggaat tactgctccc agactacaaa 3660 ttctcctcga ttgcgatacc accctatgtg ctgatgaggt cttgtacacc gccctctcca 3720 gggctgttca tggcatccac ttcatcaaca ccggagcgac gagcggtgct ttttgggaca 3780 agctgaacgc aactccttac ctcaagacct tcctagactt caccagggag gagaggctta 3840 aggaaagtca accgcgcgaa caggagccca cagagcctga gggccccact acacacttcc 3900 cagttgaaaa cgaaaagttc gtgcttgaag agcaagtcga agagctactt gaaaagcatg 3960 accgtgaaat ccttcgcccc gaccatggac ataccaattg cgtacagacg gaggacgctg 4020 tcatacaatt attctcacac caacaggcca aggaccaagc cctcctctgg gccacgattg 4080 aagcaaggct aaagatctcc aatcccaagg ccaacattgc tgagttcaac gcaaagaaag 4140 agatcggaga tgtgctgttc gaacactatc accaggccat gaaacttcct gacaaaccaa 4200 tcccgttcat ggaggacttg tgggtagcct gcgcccagga agttcaaggg acctacctct 4260 cgaagccaat caacatgtta aagaacggag agtaccgcca gtcaccggat tttgataaga 4320 acacaattgc gcttttcctg aaatcccagt gggtgaagaa gatggagaaa cttggagccc 4380 caaagattaa acccggacaa accatagcct ctttccagca gtctgcagtt atgttatacg 4440 gtacaatggc ccgttacatg aggaggatga gagaggcgtt ccaaccccca gagatcatga 4500 tcaattgcga gaaagacccc caaacgctga gtcactggat ccagaactac tggaagttta 4560 acagctacgc gtacgccaac gacttcacac aatttgacca atcgcaggat ggcgcaatgc 4620 tgcaatttga aatcctcaag gcgaagcacc attcgatccc tgagtgggtg cttgaaggtt 4680 acttagatat taagactaat gcgaaggtgt tctcgggtgt gctcagcatc atgagactca 4740 caggggaagg tcctacattt gacgcgaaca ctgaatgtaa tattgcctac acccaccttc 4800 gcttcgacgt accaaaagga acggcccaac tctacgcagg cgacgactcc gcgctgtcat 4860 gtttgccacc tgaaagacca tccttcgctg atttcaaaca gcagttaaca ctcacttcta 4920 aacctgcact cttcgctcag aaaagaggtt tctgggctga gttctgtgga tatctcatta 4980 caccactggg cataatgaag gatccggcga aattggcggc gactgtggtc ttagcacaga 5040 aacagaacaa actccacgaa tgctggcgta gccacgctct agacctcaaa ctcgcatacg 5100 tgcacaggga cgcattaaca gaagtgctct ccgagaagca acaggagctc caccaattaa 5160 ccgttagaac tctggttaag tctggagctt cagagatttt agattcttga atcaatatga 5220 atacattagt agatacctta gtagaagcag gtttcattcg cacccacgaa ccattatcca 5280 atccactggt ggttcacgca gttgcaggag caggcaaatc ctcactcata cgaagactcc 5340 ttgaaactga tgccaccttc cgcgccttca ctcgaggacc tcctgacccc ccttcactag 5400 acgccaccgc catacaggcc ttccaaccca atcctcccag tcacctcttc aatattctag 5460 atgagtatcc cgccggagaa gtgaagggac cctgggccgc cttgttcgcc gatccactgc 5520 agcaccgagc acaccctaga cgaccccact tcattaaacg ctgttctcac cgactttcag 5580 cctcaaccgc cgcactactg acctcactag ggatcccaat aaccggcacc ggacaaggaa 5640 acttcacgtc tgcgcatggc gtgtttgaag ggccactaat cggaaagatc atctcacttg 5700 acaaccacat atcacttctc ctcagcaatc actccgtgcc atacgccacc ccagacgacg 5760 tcctaggcca agaattccca atcactacag tgatctcagc tctgccctta cacgccgttt 5820 gcgataaagt gggcttatac atcgctctgt cgaggcatac cagtgaacta catgtcctct 5880 gccccaatcc acctcacccc accacctgac cactctaagg tatttattag tgtagtagta 5940 ggagtatcga tagcattgtg tgttttccta ttgaataaaa attatttacc gcacgtgggt 6000 gataacctgc attcactacc acacggaggg acgtactgtg acggaaccaa atccatcaac 6060 tatcgaggcc catctcacca cacctcctca acaacccctc tctgggcggt tatagccaca 6120 ctcacactcc cactggccat tttcctgctc aatgcgcgcc gaacttctca tcactctact 6180 ctccgctgcg gtcacgctgc ttgtgcttca ggtctggact caaccaaccc ctaatagttg 6240 ctacatcgaa gttaacggac acaccgctta cacaaactgc ccgccctcac cacacttggc 6300 ccaagtcgtc gcccatctca aaccacactc acacgcggtt aagtttccaa ctgggttgaa 6360 acaaaatgac agacaagact gcagccacca atgtcctctc taaggcagtc aactcaaacg 6420 ctattccttt taccacccca aaacctgagg agctcagcgc catgacattc actctcaaca 6480 accgctcttt acccacgccg ggagagctaa tagccatcgc cgagcaatgg aaaacacttg 6540 gtgtgccagg cgaagcggtc actacgcatg cactccagct tactatgttc tgctatcact 6600 ccggctcctc tccaaacact gagataacag gagactcagc cacaccaaaa gtcactttgg 6660 cacagctagc aggcgttgtc atgcaacaca ccaccctgag gaaattctgt agattctttg 6720 ccccactcgt ttggaattgg gctctcgatc acaaaattcc cccagcttct tggcaggcta 6780 acaacttccc accagacgag aagtacgctg cctttgactt cttcgatggc gtcaccaatg 6840 gcggctccat gctcccagct gacggcctca ggcgccaacc cactcccaag gaactcatcg 6900 ctcacgccac cgctcagagc accaacattt tcacggcgtc acagaaccag cttcaaaccg 6960 cttcaaccca tcttctgcac accaaaggtc gcttctccac agaacccacc aagcagtact 7020 acctcccagg ccccgaagcc tgactaccta tatgcataac ttaatatgtg tgggaaacag 7080 tttcactaga cttctgtttt aaaaaaaaaa aaaaaaaa 7118 //