ID FJ434943; SV 1; circular; genomic DNA; STD; VRL; 2763 BP. XX AC FJ434943; XX DT 16-DEC-2008 (Rel. 98, Created) DT 08-MAY-2018 (Rel. 136, Last updated, Version 2) XX DE Honeysuckle yellow vein virus, complete sequence. XX KW . XX OS Honeysuckle yellow vein virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2763 RA Wang Y., Jing J., Oh T.K., Lee H.J., Kim S.H., Udayakumar R., Shim M.Y., RA Choi C.W., Kim Y.S.; RT "Evidence for intraspecies-recombination for a monopartite Tobacco leaf RT curl (TbLCV) in Korea"; RL Unpublished. XX RN [2] RP 1-2763 RA Wang Y., Jing J., Oh T.K., Lee H.J., Kim S.H., Udayakumar R., Shim M.Y., RA Choi C.W., Kim Y.S.; RT ; RL Submitted (03-NOV-2008) to the INSDC. RL Biology & Medicinal Science, Pai Chai University, 439-6 Doma 2-dong, RL Seo-gu, Daejeon 302-735, Korea XX DR MD5; 9c07bd31b28f6e9d38086e9e39bd6736. XX FH Key Location/Qualifiers FH FT source 1..2763 FT /organism="Honeysuckle yellow vein virus" FT /host="tomato" FT /isolate="TbLCKV" FT /mol_type="genomic DNA" FT /country="South Korea" FT /collection_date="2007" FT /identified_by="Chang Won Choi" FT /PCR_primers="fwd_seq: atggctccaccgaaacgttttagaataaca, FT rev_seq: gaattcagacgggagtgaaaa" FT /PCR_primers="fwd_seq: gaattcaaaacgtttcggtgg, rev_seq: FT gaattctacatcctcagactt" FT /PCR_primers="fwd_seq: gaattcaaatcagagtgtatttct, rev_seq: FT gtcgacttaaataccctcaagaaatg" FT /PCR_primers="fwd_seq: gaattcatgcaaccttcgtcacc, rev_seq: FT gtcgacttaatttgatattgaatcatagaaatag" FT /PCR_primers="fwd_seq: gaattcatgtcgaagcgaccagg, rev_seq: FT tcaatcctcctcctgcgtggttgt" FT /db_xref="taxon:240865" FT gene 138..479 FT /gene="V2" FT CDS 138..479 FT /codon_start=1 FT /gene="V2" FT /product="V2" FT /note="nonstructural protein; cell-to-cell movement" FT /db_xref="GOA:B7U5F3" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:B7U5F3" FT /protein_id="ACJ53813.1" FT /translation="MWDPLLNDFPETVHGFRCMLAVKYLLLVEATYSPDTVGYDLIRDL FT IGVIRAKNYVEASSRYRDFHSRLQGTAPPELRQPVCQPCECPHCPRHKQKEIMGSKAHV FT PEAQDVPNV" FT gene 298..1071 FT /gene="V1" FT CDS 298..1071 FT /codon_start=1 FT /gene="V1" FT /product="V1" FT /note="capsid protein; encapsidation" FT /db_xref="GOA:B7U5F4" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:B7U5F4" FT /protein_id="ACJ53814.1" FT /translation="MSKRPADIGIFTPVSKVRRRLNFDSPYANRASAPIALVTNKRRSW FT AQRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSYEKKNDVGHSGTLLCVSDITRGNGLTH FT RVGKRFCIKSVYIIGKIWMDENIKTKNHTNNVLFWLVRDRRPGSTPYGFQEAFNMFENE FT PSTSTVKQELRDRLQVLHRFSATVTGGQYASKEQAIIKRFWKLNHHVTYNHQEQAKYEN FT HTENALLLYMACTHASNPVYATLKIRVYFYDSVQN" FT gene complement(1068..1472) FT /gene="C3" FT CDS complement(1068..1472) FT /codon_start=1 FT /gene="C3" FT /product="C3" FT /note="replication enhancer protein" FT /db_xref="GOA:B7U5F5" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:B7U5F5" FT /protein_id="ACJ53815.1" FT /translation="MDSRTGVTITAAQAWNGAYIWTVPNPLYFKITKHAQRPFNMEQDI FT MTIQIQFNHNLRSQLGLHKCFLTFNIWTLLHPQTSHFLRVFRTQVLKYLDNLGVISINN FT VIRAVDHVLYNVLEGTEYVQTLHDIKFKLY" FT gene complement(1213..1620) FT /gene="C2" FT CDS complement(1213..1620) FT /codon_start=1 FT /gene="C2" FT /product="C2" FT /note="transactivator for gene expression; viral FT pathogenicity; suppressor of RNA silencing" FT /db_xref="GOA:B7U5F6" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:B7U5F6" FT /protein_id="ACJ53816.1" FT /translation="MQPSSPSTAHSTQVPIKVRHRSEKRRQPRRRRIDLNCGCSIYVAL FT GCANHGFTHRGHHHCSSGMEWRVYLDSAKSPIFQNHEARSTAIQHGAGHNDYTDTIQPQ FT PQISTGSTQVLPDLQYLDSLTSSDFAFLEGI" FT gene complement(1520..2611) FT /gene="C1" FT CDS complement(1520..2611) FT /codon_start=1 FT /gene="C1" FT /product="C1" FT /note="replication-associated protein" FT /db_xref="GOA:B7U5F7" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:B7U5F7" FT /protein_id="ACJ53817.1" FT /translation="MAPPKRFRINSKNYFLTYPHCSLTKEEALSQIQALETPTNKLFIR FT ICRELHEDGSPHLHILIQFEGKYQCTNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKTYM FT EKDGDVIDFGVFQVDGRSARGGCQSANDAYAEAINSGSKSSALSILREKAPKDFVLQFH FT NLNSNLDRIFSPPLEVFVSPFSSSSFDQVPDELEDWAAENVRDTAARPWRPMSIVIEGD FT SRTGKTMWARSLNPRHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRD FT WQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYTEYLDEEKNAALKAWAIKNATFVTLYGP FT LYSGTHQGATQVREEETTTQEED" FT gene complement(2161..2454) FT /gene="C4" FT CDS complement(2161..2454) FT /codon_start=1 FT /gene="C4" FT /product="C4" FT /note="nonstructural protein; cell-to-cell movement; FT symptom severity" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:B7U5F8" FT /protein_id="ACJ53818.1" FT /translation="MGALISTSSSNSKENTSAQINDSSISSPQLGQHISIQTFRELRAR FT QMSRPTWRKTETSLILEFSRSMEDQLEEVASLPTTHMPRQSTQDPSHRPCLY" XX SQ Sequence 2763 BP; 726 A; 557 C; 650 G; 830 T; 0 other; accggatggc cgcccgaaat ttcgtgatgg tccccccctt gtcggccaat gagatgtgtg 60 cgttgaaagt tagataagtg gatgctgaca tgcgcttttg tctttatata cgtcagccct 120 aattttaacg gtgtgagatg tgggatcctt tacttaacga tttccctgaa accgttcacg 180 gtttcaggtg tatgctagcg gttaaatacc tccttcttgt agaggctacg tattctccgg 240 atacggtggg ttacgatctg atacgtgatc tcataggtgt gatccgtgcc aagaattatg 300 tcgaagcgtc cagcagatat agggattttc actcccgtct ccaaggtacg gcgccgcctg 360 aacttcgaca gcccgtatgc caaccgtgcg agtgccccca ttgccctcgt cacaaacaaa 420 aggagatcat gggctcaaag gcccatgtac cggaagccca ggatgtaccg aatgtataga 480 agccctgatg tgcctaaggg gtgtgaaggc ccgtgtaagg tccagtcata tgagaagaaa 540 aatgatgtgg gtcattctgg tacccttctc tgtgtgtctg atattacccg tggtaatggg 600 cttactcatc gtgttgggaa gagattttgc ataaaatctg tttatattat tggtaaaata 660 tggatggatg aaaatattaa gaccaagaat cacactaaca acgtgttatt ctggttggtt 720 agagatagac gacctggttc aacgccgtat ggttttcagg aggcattcaa tatgtttgag 780 aatgaaccca gtacgtccac tgtcaaacag gaattaagag atcgattgca ggttttacac 840 aggttcagtg caacggttac tggtggacaa tatgcgtcta aggaacaagc tattataaag 900 aggttctgga agctgaatca ccatgtcact tacaatcatc aggagcaagc taaatatgag 960 aatcatacgg aaaatgcgtt attattgtat atggcttgta ctcatgccag caatccagtg 1020 tatgctacat taaaaatcag agtgtatttc tatgattcag tacaaaatta ataaagtttg 1080 aattttatat catgaagtgt ttgtacatac tctgttccct ctaatacatt atacaataca 1140 tgatcaactg ctctaattac attgttaatt gaaattacac ccaaattatc taagtacttt 1200 aacacttggg tcctaaatac cctcaagaaa tgcgaagtct gaggatgtaa gagagtccaa 1260 atattgaagg tcaggaagca cttgtgtaga cccagttgag atctgaggtt gtggttgaat 1320 tgtatctgta tagtcattat gtcctgctcc atgttgaatg gccgttgagc gtgcttcgtg 1380 attttgaaat ataggggatt tggcactgtc cagatatacg cgccattcca tgcctgagct 1440 gcagtgatgg tgacccctgt gcgtgaatcc atggtttgca cagcccaatg cgacgtaaat 1500 agaacacccg caatttagat caatcctcct cctgcgtggt tgtctcctct tctctgacct 1560 gtgtcgcacc ttgatgggta cctgagtaga gtgggccgta gagggtgacg aaggttgcat 1620 ttttaattgc ccatgccttt agggctgcgt tcttctcttc gtctaaatac tcggtgtatg 1680 atgacgttgg tcctggattg cagaggaaga ttgttgggat accaccttta atttgaattg 1740 gtttcccgta cttggtgttg ctttgccagt ccctttgggc ccccatgaat tccttaaagt 1800 gctttaggta gtgggggtct acgtcatcaa tgacgttgta ccaggcgtcg ttgttgtaaa 1860 ccttggggct taagtcaaga tggccgcaaa ggtaattatg acgtggattt agtgacctgg 1920 cccacatagt cttccctgtc ctgctatccc cctctatcac aatactcatg ggcctccacg 1980 gccgcgcagc ggtatccctg acgttctcgg cagcccaatc ttcaagttca tcgggaactt 2040 ggtcaaaaga agaagaagaa aaaggagaaa caaatacctc caacggagga gaaaaaatcc 2100 tatctaaatt actatttaaa ttatgaaatt gtaaaacaaa atctttggga gctttctccc 2160 ttaatataga caaggccgat gacttggatc ctgagttgat tgcctcggca tatgcgtcgt 2220 tggcagactg gcaacctcct ctagctgatc ttccatcgac ctggaaaact ccaaaatcaa 2280 tgacgtctcc gtctttctcc atgtaggtct tgacatctga cgagctctta gctccctgaa 2340 tgtttggatg gaaatgtgct gacctagttg gggagacgag atcgaagaat cgttgatttg 2400 tgcactggta ttttccttcg aattggatga ggatgtggag atgagggctc ccatcttcat 2460 gtagttctct gcagattcgg atgaataatt tattagttgg tgtttctagg gcttgaattt 2520 gggaaagggc ttcttctttg gttagagagc agtgtgggta tgtgaggaaa taatttttgc 2580 tatttattct aaaacgtttc ggtggagcca taattacaaa tatgcccttg taccccgatt 2640 gggagagaaa tcttctttgc tatgaatcgg tgtaatgggg tacaatatat actccttatg 2700 tttttacttt tgaattttga aattcaaaat tcaaattggt aaagcggcca tccgtataat 2760 att 2763 //