ID   EU685322; SV 1; circular; genomic DNA; STD; VRL; 2781 BP.
XX
AC   EU685322;
XX
DT   29-DEC-2008 (Rel. 98, Created)
DT   29-DEC-2008 (Rel. 98, Last updated, Version 1)
XX
DE   African cassava mosaic virus isolate ACMV-[NG:So:03] segment DNA-A,
DE   complete sequence.
XX
KW   .
XX
OS   African cassava mosaic virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2781
RX   DOI; 10.1007/s00705-008-0169-8.
RX   PUBMED; 18661095.
RA   Alabi O.J., Ogbe F.O., Bandyopadhyay R., Lava Kumar P., Dixon A.G.,
RA   Hughes J., Naidu R.A.;
RT   "Alternate hosts of African cassava mosaic virus and East African cassava
RT   mosaic Cameroon virus in Nigeria";
RL   Arch. Virol. 153(9):1743-1747(2008).
XX
RN   [2]
RP   1-2781
RA   Alabi O.J., Ogbe F.O., Bandyopadhyay R., Lava-Kumar P., Dixon A.G.O.,
RA   Hughes J., Rayapati N.A.;
RT   ;
RL   Submitted (05-APR-2008) to the INSDC.
RL   Plant Pathology, Washington State University, 24106 N. Bunn Road, Prosser,
RL   WA 99350, USA
XX
DR   MD5; 6334860f4f53c7dcce97f07811b43b68.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2781
FT                   /organism="African cassava mosaic virus"
FT                   /segment="DNA-A"
FT                   /host="Senna occidentalis"
FT                   /isolate="ACMV-[NG:So:03]"
FT                   /mol_type="genomic DNA"
FT                   /country="Nigeria"
FT                   /db_xref="taxon:10817"
FT   gene            136..477
FT                   /gene="AV2"
FT   CDS             136..477
FT                   /codon_start=1
FT                   /gene="AV2"
FT                   /product="pre-coat protein"
FT                   /db_xref="GOA:Q6EMI2"
FT                   /db_xref="InterPro:IPR002511"
FT                   /db_xref="InterPro:IPR005159"
FT                   /db_xref="UniProtKB/TrEMBL:Q6EMI2"
FT                   /protein_id="ACF42197.1"
FT                   /translation="MWDPLVNEFPDSVHGLRCMLAIKYLQALEDTYEPSTLGHDLVRDL
FT                   VSVIRARNYVEATRRYHHFHSRLQGSSKAELRQPIQEPCYCPHCPRHKSKTGLDEQAHV
FT                   QKAHDVQDV"
FT   gene            complement(274..639)
FT                   /gene="AC5"
FT   CDS             complement(274..639)
FT                   /codon_start=1
FT                   /gene="AC5"
FT                   /product="unknown"
FT                   /db_xref="GOA:B8QSD8"
FT                   /db_xref="UniProtKB/TrEMBL:B8QSD8"
FT                   /protein_id="ACF42196.1"
FT                   /translation="MDLIQNLFPTLCVSPGPRVTSLITLQIPRCFTSSLCSNDWTLHGP
FT                   SQPLGMSGLLYILYIMGFLYMGLFIQARFRFVTWTVGAVARFLYGLSKFSLRRTLEPGV
FT                   EMMISPGRFDIITSPDN"
FT   gene            complement(278..940)
FT                   /gene="AC5_4"
FT   CDS             complement(281..940)
FT                   /codon_start=1
FT                   /gene="AC5_4"
FT                   /product="unknown"
FT                   /db_xref="InterPro:IPR006892"
FT                   /db_xref="InterPro:IPR013671"
FT                   /db_xref="UniProtKB/TrEMBL:B8QSD9"
FT                   /protein_id="ACF42192.1"
FT                   /translation="MIICHVMIQPVKPFHQCLLLHARWTTNNSGMKFPQHLKPIPQIVL
FT                   NCCSTGLIIKHVKYLPKVLGRIAIRPSIPKQVKHHIISVILLLNIFIHPDLPKNVNGLD
FT                   TKPLSDPVCQPRPTCHITNHLTDTKVLHIIPLLKRLDLTWAFTAPRYVWASIHPVHHGL
FT                   SVHGPVHPGPFSICDVDSGGSSTVPVWAVEVQPSTNLGAWSGNDDISWSLRHNYEP"
FT   gene            296..1075
FT                   /gene="AV1"
FT   CDS             296..1072
FT                   /codon_start=1
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /db_xref="GOA:B8QSB1"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:B8QSB1"
FT                   /protein_id="ACF42191.1"
FT                   /translation="MSKRPGDIIISTPGSKVRRRLNFDSPYRNRATAPTVHVTNRKRAW
FT                   MNRPMYRKPMMYRMYRSPDIPRGCEGPCKVQSFEQRDDVKHLGICKVISDVTRGPGLTH
FT                   RVGKRFCIKSIYILGKIWMDENIKKQNHTNNVMFYLLRDRRPYGNTPQDFGQIFNMFDN
FT                   EPSTATIKNDLRDRFQVLRKFHATVIGGPSGMKEQALVKRFYRLNHHVTYNHQEAGKYE
FT                   NHTENALLLYMACTHASNPVYATLKIRIYFYDSIGN"
FT   gene            complement(1069..1473)
FT                   /gene="AC3"
FT   CDS             complement(1069..1473)
FT                   /codon_start=1
FT                   /gene="AC3"
FT                   /product="replication enhancer protein"
FT                   /db_xref="GOA:B8QSE1"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:B8QSE1"
FT                   /protein_id="ACF42195.1"
FT                   /translation="MDLRTGELITAPQAMNGVYTWEINNPLYFTITRHQQRPFLMNQDI
FT                   ITVQVRFNHNLRTELGIHKCFLNFRILTTLQPRTGLFLRVFRYQVLKYLDNMGVISIND
FT                   VIRAADHVLFNVIENTIACQLTHEIKFNVY"
FT   gene            complement(1214..1621)
FT                   /gene="AC2"
FT   CDS             complement(1214..1621)
FT                   /codon_start=1
FT                   /gene="AC2"
FT                   /product="transcriptional activator protein"
FT                   /db_xref="GOA:B8QSE2"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:B8QSE2"
FT                   /protein_id="ACF42194.1"
FT                   /translation="MQSSSPSQNHSTQVPIKVSHRQFKKRAIRRRRVDLVCGCSYYLHI
FT                   NCSNHGFTHRGTHHCSSSNEWRVYLGNKQSPVFHNHQAPTTTIPDEPGHHNSPGSIQSQ
FT                   PADGAGDSQMFSQLPDLDDLTASDWSFLKGL"
FT   gene            complement(1530..2606)
FT                   /gene="AC1"
FT   CDS             complement(1530..2606)
FT                   /codon_start=1
FT                   /gene="AC1"
FT                   /product="replication protein"
FT                   /db_xref="GOA:B8QSE3"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:B8QSE3"
FT                   /protein_id="ACF42190.1"
FT                   /translation="MRTPRFRIQAKNVFLTYPKCSIPKEHLLSFIRTLSLPSNPKFIKI
FT                   CRELHQNGEPHLHALIQFEGKITITNNRLFDCVHPSCSTNFHPNIQGAKSSSDVKSYLD
FT                   KDGDTIEWGQFQIDGRSARGGQQSANDAYAKALNSGSKSEALNVIRELVPKDFVLQFHN
FT                   LNSNLDRIFQEPPTPYVSPFPCSSFDQVPDELEEWVADNVRDSAARPWRPNSIVIEGDS
FT                   RTGKTMWARSLGPHNYLCGHLDLSPKVFNNDAWYNVIDDVDPHYLKHFKEFMGSQRDWQ
FT                   SNTKYGKPVQIKGGIPTIFLCNPGPTSSYKEFLDEEKQAALKAWALKNAIFITLTEPLY
FT                   SGSNQSQSQTIQEESHPA"
FT   gene            complement(2162..2572)
FT                   /gene="AC4"
FT   CDS             complement(2162..2572)
FT                   /codon_start=1
FT                   /gene="AC4"
FT                   /product="AC4 protein"
FT                   /note="host activation protein"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:B8QSE4"
FT                   /protein_id="ACF42193.1"
FT                   /translation="MSFSHTQNVLYPKNTCCHSFERYLSHPTLSSLKYVESCIRMGNLT
FT                   CMPSSNSRAKSRLRTIVSSIAYTQAVAPISTPTFKVPNPAPMSSPIWIRTETLSNGDNF
FT                   RSMDDLLEEVNNQRMMLTPKRLTAAVSQRLLM"
XX
SQ   Sequence 2781 BP; 752 A; 567 C; 687 G; 775 T; 0 other;
     accggttggc cccgcccccc tttaaacgtg gtccccgcgc actacgtatg tcggccaatc        60
     atgcggcagc tttaaaggtt atttattagt ggtggaccac tatatactta caggcgaagt       120
     tgttgctagt gcgcaatgtg ggatccactg gtgaatgagt ttccagactc ggtgcatggg       180
     cttaggtgta tgcttgcaat taaatatttg caggccttag aggatacata cgagcccagt       240
     acgttgggcc acgatctggt tagagatcta gtctcagtta tcagggctcg taattatgtc       300
     gaagcgacca ggagatatca tcatttccac tccaggctcc aaggttcgtc gaaggctgaa       360
     cttcgacagc ccatacagga accgtgctac tgcccccact gtccacgtca caaatcgaaa       420
     acgggcctgg atgaacaggc ccatgtacag aaagcccatg atgtacagga tgtatagaag       480
     cccagacata cctaggggct gtgaaggccc atgtaaggtc cagtcgtttg agcagaggga       540
     tgatgtgaag caccttggta tctgtaaggt gattagtgat gtgacacgtg ggcctgggct       600
     gacacacagg gtcggaaaga ggttttgtat caagtccatt tacattcttg ggaagatctg       660
     gatggatgaa aatattaaga agcagaatca cactaataat gtgatgtttt acctgcttag       720
     ggatagaagg ccttatggca atacgcccca agactttggg cagatattta acatgtttga       780
     taatgagccc agtactgcaa caattaagaa cgatttgagg gataggtttc aagtgttgag       840
     gaaatttcat gccactgtta ttggtggtcc atctggcatg aaggagcagg cattggtgaa       900
     aaggttttac aggttgaatc atcacgtgac atataatcat caggaggcag ggaagtatga       960
     gaatcacaca gagaatgctt tgcttctata catggcatgt acgcatgcct ccaatcctgt      1020
     atatgctacg ttgaaaatac gtatatactt ctacgacagt attggcaatt aataaacatt      1080
     gaattttatt tcatgagtca actgacacgc aatagtattt tcaattacat tgaacaaaac      1140
     atgatcagca gctctaatga catcgttaat ggagataaca cccatattat ccaagtattt      1200
     aagtacttgg tatctaaaga cccttaagaa aagaccagtc cgaggctgta aggtcgtcaa      1260
     gatccggaag ttgagaaaac atttgtgaat ccccagctcc gtccgcaggt tgtgattgaa      1320
     tcgaacctgg actgttatga tgtcctggtt catcaggaat ggtcgttgtt ggtgcctggt      1380
     gattgtgaaa tacaggggat tgtttatttc ccaggtatac acgccattca ttgcttgagg      1440
     agcagtgatg agttcccctg tgcgtaaatc catgattgga gcagttgata tggaggtaat      1500
     atgaacagcc acagacaaga tccactctcc tacgccggat ggctctcttc ttgaattgtc      1560
     tgtgactgac tttgattgga acctgagtag agtggttctg tgagggtgat gaagattgca      1620
     ttctttaatg cccaggcctt tagtgctgct tgcttttcct cgtcgaggaa ctctttatag      1680
     gacgaggtag gtcctggatt gcagaggaag atagtgggaa tcccaccttt aatttgaacg      1740
     ggtttcccgt acttcgtgtt ggactgccag tccctctggg accccatgaa ttccttaaag      1800
     tgctttaggt agtggggatc gacgtcatca atgacgttgt accaggcatc attattgaag      1860
     acctttggac taaggtccag gtgtccacac aggtaattgt gtgggcctaa agatctggcc      1920
     cacatcgtct tccctgttct gctatcacct tctatgacaa tactattggg tctccatggc      1980
     cgcgcagcgg aatcccgaac attatcagcg acccattctt caagttcatc aggaacttgg      2040
     tcaaaggaag aacatgggaa gggagaaaca taaggagttg gtggctcttg gaaaatccta      2100
     tctaaattac tatttagatt atgaaactga agtacaaagt cctttgggac taattcccta      2160
     attacattaa gagcctctga cttactgccg ctgttaagcg ctttggcgta agcatcattc      2220
     gctgattgtt gacctcctct agcagatcgt ccatcgatct gaaattgtcc ccattcgata      2280
     gtgtctccgt ccttatccag ataggacttg acatcggagc tggatttggc accttgaatg      2340
     ttggggtgga aattggtgct acagcttggg tgtacgcaat cgaagagacg attgttcgta      2400
     atcgtgattt tgccctcgaa ttggatgagg gcatgcaagt gaggttcccc attctgatgc      2460
     agctctctac atattttaat gaacttaggg ttggatggga gagatagcgt tcgaatgaat      2520
     gacagcaggt gttctttggg tatagaacat tttgggtatg tgagaaagac attcttggct      2580
     tgaattctaa aacgcggagt ccgcatattg accaagtcaa ttagagacac tcaactggag      2640
     acacccttga gcatctcctc ctattaattg gagacaatat atagttgtct ccaaatggca      2700
     ttcgtgtaat aagtggaact ttaatttgaa tgaaaaggct caagaggcgc ggaacaccca      2760
     aggggccaac cgtataatat t                                                2781
//