ID EU487047; SV 2; circular; genomic DNA; STD; VRL; 2750 BP. XX AC EU487047; XX DT 11-MAR-2008 (Rel. 95, Created) DT 01-MAY-2011 (Rel. 108, Last updated, Version 3) XX DE Tomato leaf curl Cotabato virus isolate GSD1, complete genome. XX KW . XX OS Tomato leaf curl Cotabato virus OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2750 RA Tsai W.S., Shih S.L., Venkatesan S.G., Aquino M.U., Green S.K., Kenyon L., RA Jan F.J.; RT "Distribution and genetic diversity of begomoviruses infecting tomato and RT pepper plants in the Philippines"; RL Ann. Appl. Biol. 158(3):275-287(2011). XX RN [2] RP 1-2750 RA Tsai W.S., Shih S.L., Venkatesan S.G., Aquino M., Huang Y.C., Green S.K., RA Jan F.-J.; RT "Molecular identification of Solanaceae- and Cucurbitaceae-infecting RT Begomoviruses in the Philippines"; RL Unpublished. XX RN [3] RP 1-2750 RA Tsai W.S., Shih S.L., Venkatesan S.G., Aquino M., Huang Y.C., Green S.K., RA Jan F.-J.; RT ; RL Submitted (13-FEB-2008) to the INSDC. RL Virology Unit, AVRDC-the World Vegetable Center, P.O. Box 42, Shanhua, RL Taina, Taiwan 74199, Republic of China XX RN [4] RC Sequence update by submitter RP 1-2750 RA Tsai W.S., Shih S.L., Venkatesan S.G., Aquino M., Huang Y.C., Green S.K., RA Jan F.-J.; RT ; RL Submitted (16-AUG-2010) to the INSDC. RL Virology Unit, AVRDC-the World Vegetable Center, P.O. Box 42, Shanhua, RL Taina, Taiwan 74199, Republic of China XX DR MD5; f03438fb8ae9d8630179a81d833dfd14. XX CC On Aug 16, 2010 this sequence version replaced gi:169640076. XX FH Key Location/Qualifiers FH FT source 1..2750 FT /organism="Tomato leaf curl Cotabato virus" FT /segment="DNA-A" FT /host="tomato" FT /isolate="GSD1" FT /mol_type="genomic DNA" FT /country="Philippines:Mindanao" FT /isolation_source="plant with yellow mosaic symptom" FT /db_xref="taxon:507475" FT misc_feature join(2603..2750,1..131) FT /note="intergenic region" FT gene 132..482 FT /gene="V2" FT CDS 132..482 FT /codon_start=1 FT /gene="V2" FT /product="pre-coat protein" FT /db_xref="GOA:B1PRI6" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:B1PRI6" FT /protein_id="ACA61118.1" FT /translation="MWDPLVNEFPDTVHGFKCMLAVKYLQLVESTYSPDTLGYDLIRDL FT ISVIRAKNYVEASRRYSHFHARIEGTSSSQFRQPLHEPCCCPHCPRHQQKENMVQQAHV FT QEAQNVQNVQKS" FT gene 292..1065 FT /gene="V1" FT CDS 292..1065 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:B1PRI7" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:B1PRI7" FT /protein_id="ACA61119.1" FT /translation="MSKRPADIVISTPASKVRRRLNFDSPYTSRAAAPTVLVTNKRRTW FT SNRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSYEQRHDISHVGKVLCVSDVTRGSGLTH FT RVGKRFCVKSVYVLGKIWMDENIKTKNHTNTVMFYLVRDRRPFGTAMDFGQVFNMYDNE FT PSTATIKNDFRDRFQVLRKFTSTVTGGQYASKEQALVRKFMKVNNYVVYNHQEAAKYDN FT HTENALLLYMACTHASNPVYATLKIRIYFYDSLQN" FT gene complement(1062..1466) FT /gene="C3" FT CDS complement(1062..1466) FT /codon_start=1 FT /gene="C3" FT /product="C3 protein" FT /db_xref="GOA:B1PRI8" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:B1PRI8" FT /protein_id="ACA61122.1" FT /translation="MDSRTGELITAAQTESGVYTWTIRNPLYFKITKHDERPFLMNHDI FT MTVQIQFNHNLRKALGIHQCFLIFQIWTHLRPQTWRFLRIFKYQCMKYLDNLGVISINN FT VIRAVSHVLWHVMEKTIDVQQSSIIKFNLY" FT gene complement(1207..1614) FT /gene="C2" FT CDS complement(1207..1614) FT /codon_start=1 FT /gene="C2" FT /product="C2 protein" FT /db_xref="GOA:B1PRI9" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:B1PRI9" FT /protein_id="ACA61121.1" FT /translation="MQNSSPSHNHCTQVPIKVQHKIAKKKPVRRRRVDLPCGCSYYFGI FT DCANHGFSHRGTHHCSSNREWRIYLDDQKSPLFQDNQARREAVPDEPRYHDGTNTVQPQ FT PKESVGNTPVFSDFPDLDSFTSSDLAFLKNL" FT gene complement(1514..2602) FT /gene="C1" FT CDS complement(1514..2602) FT /codon_start=1 FT /gene="C1" FT /product="replication-associated protein" FT /db_xref="GOA:B1PRJ0" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:B1PRJ0" FT /protein_id="ACA61120.2" FT /translation="MPPPRRFLINAKNYFLTYPQCSLTKEEALSQLQTLNTPTNKKYIK FT ICRELHEDGSPHLHVLVQFEGKYKCQNNRFFDLVSPNRSAHFHPNIQGAKSSSDVKSYI FT DKDGDTLEWGEFQIDGRSGRGGQQSANDAYAKALNSGSKSEALNVIKELAPKDFVLQFH FT NLNSNLDRIFAPPLEVFVSPFLSSSFDQVPEELEVWVSENVRDAAARPWRPKSIVVEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNNVWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEDKNSALKDWALKNAEFITITQPL FT YSSTHQGPTQNSQEKTSSQAES" FT gene complement(2155..2445) FT /gene="C4" FT CDS complement(2155..2445) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:B1PRJ1" FT /protein_id="ACA61123.1" FT /translation="MGALISTCWSSSKANTSAKITDSSIWYPQTGQHISIRTFRELNRA FT PTSSPISTRTETHSNGANSRSTEEVDEGVNNQPMTLTPRHLTAAVSQRLLM" XX SQ Sequence 2750 BP; 739 A; 550 C; 598 G; 863 T; 0 other; accggatggc cgcgattttt tttggtggtc ctcttccacg aactttcgtc tgccaataga 60 aacgctcctt caaagcttat ttaataagtg gtcccctatt taagacttgg tcaccaagtt 120 gatatccaaa catgtgggat ccattagtta atgagtttcc cgatactgtt catggtttca 180 agtgtatgct cgccgtaaag tacttgcagt tagtagagtc tacgtattcc ccagatacac 240 tcgggtacga tcttatacga gatttaattt cagtaattcg tgcaaaaaac tatgtcgaag 300 cgtcccgccg atatagtcat ttccacgccc gcatcgaagg tacgtcgtcg tctcaatttc 360 gacagccctt acacgagccg tgctgctgcc cccactgtcc tcgtcaccaa caaaaggaga 420 acatggtcca acaggcccat gtacaggaag cccagaatgt acagaatgta cagaagtcct 480 gatgtgccca aaggttgtga aggcccatgt aaggtccaat cgtatgaaca gaggcacgac 540 atatcccatg ttggtaaagt attatgtgtc agtgatgtca ctcgtggtag tgggcttacc 600 catcgagttg gtaagagatt ttgtgtgaag tctgtttatg tattgggtaa aatatggatg 660 gatgaaaata tcaaaaccaa gaaccatacg aatactgtga tgttttatct tgttcgtgat 720 agaaggccct ttggtactgc tatggatttt ggtcaggtgt ttaacatgta tgataatgag 780 cccagtactg ctactatcaa gaatgatttt cgagatcgtt ttcaggtttt aaggaaattc 840 acctcgacag taacaggtgg tcaatatgct tccaaggaac aggcgttggt taggaaattt 900 atgaaggtta ataattacgt agtttataat catcaagaag ctgctaagta tgacaatcat 960 actgagaatg ccttgttatt gtatatggct tgtactcatg ccagtaatcc agtgtatgct 1020 actttgaaga tcagaatcta tttctatgat tctcttcaga attaataaag attgaatttt 1080 attatacttg attgttgtac atcgattgtt ttttccatta catgccataa tacatgagaa 1140 actgccctaa ttacattgtt tatgctaatt acacccaaat tatctaaata cttcatacat 1200 tgatatttaa agattcttaa gaaacgccaa gtctgaggac gtaaatgagt ccagatctgg 1260 aaaatcagaa aacactggtg tattcccaac gctttcctta ggttgtggtt gaactgtatt 1320 tgtaccgtca tgatatcgtg gttcatcagg aacggcctct cgtcgtgctt ggttatcttg 1380 aaatagaggg gatttctgat cgtccaggta tatacgccac tctctgtttg agctgcagtg 1440 atgagttccc ctgtgcgaga atccatgatt tgcacaatct atgccgaagt agtaagagca 1500 accgcaagga agatcaactc tccgcctgcg aactggtttt ttcttggcta ttttgtgttg 1560 gaccttgatg ggtacttgag tacaatggtt gtgtgatggt gatgaattct gcattcttta 1620 gtgcccagtc tttgagtgca gaatttttat cctcatctag gtactcttta tacgacgacg 1680 ttggtcctgg attgcagagg aagatagtgg gaattccacc tttaatttga atgggcttcc 1740 cgtatttcgt gttgctttgc cagtccctct gggcccccat gaattcttta aagtgcttta 1800 gatagtgggg gtcgacgtca tcgatgacgt tgtaccaaac attattactg tagacctttg 1860 gacttaagtc cagatgtcca cataaataat tgtgtggacc cagtgaccta gcccacatcg 1920 tcttccctgt cctactatca ccctctacca ctatactttt aggtctccac ggccgcgcag 1980 cggcatccct cacattctcg gagacccata cttcaagttc ctctggaact tgatcgaaag 2040 aagaagaaag aaaaggagaa acaaaaacct ctaaaggagg tgcaaaaatc ctatctaaat 2100 tagaatttaa attatgaaat tgtaaaacaa aatctttagg agctaactct ttaattacat 2160 taagagcctc tgacttactg ccgctgttaa gtgccttggc gtaagcgtca ttggctgatt 2220 gttgaccccc tcgtccactt cttccgtcga tctggaattc gccccattcg agtgtgtctc 2280 cgtccttgtc gatataggac ttgacgtcgg agctcgattt agctccctga atgttcggat 2340 ggaaatgtgc tgacctgttt ggggatacca aatcgaagaa tctgttattt tggcacttgt 2400 atttgccttc gaactggacc agcacgtgga gatgagggct cccatcttcg tgtaactctc 2460 gacagatctt tatgtatttt ttatttgttg gtgtgtttag ggtttgcaat tgggaaagtg 2520 cttcttcttt agtgagagag cattgtggat aagtgaggaa ataattttta gcattaataa 2580 gaaatctcct aggtggaggc attttgactt ggtcaatcag gtcctctcaa acttggctat 2640 gcaatcgggg aatgggtcct tatttatatg tgaggaccta aatggcatga ttgtaattaa 2700 taagaataat ttgaaatttg agatccaaaa gcggccagcc gtataatatt 2750 //