ID EU487028; SV 2; circular; genomic DNA; STD; VRL; 2755 BP. XX AC EU487028; XX DT 11-MAR-2008 (Rel. 95, Created) DT 01-MAY-2011 (Rel. 108, Last updated, Version 3) XX DE Tomato leaf curl Philippines virus isolate P20, complete genome. XX KW . XX OS Tomato leaf curl Philippines virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2755 RA Tsai W.S., Shih S.L., Venkatesan S.G., Aquino M.U., Green S.K., Kenyon L., RA Jan F.J.; RT "Distribution and genetic diversity of begomoviruses infecting tomato and RT pepper plants in the Philippines"; RL Ann. Appl. Biol. 158(3):275-287(2011). XX RN [2] RP 1-2755 RA Tsai W.S., Shih S.L., Venkatesan S.G., Aquino M., Huang Y.C., Green S.K., RA Jan F.-J.; RT "Molecular identification of Solanaceae- and Cucurbitaceae-infecting RT Begomoviruses in the Philippines"; RL Unpublished. XX RN [3] RP 1-2755 RA Tsai W.S., Shih S.L., Venkatesan S.G., Aquino M., Huang Y.C., Green S.K., RA Jan F.-J.; RT ; RL Submitted (13-FEB-2008) to the INSDC. RL Virology Unit, AVRDC-the World Vegetable Center, P.O. Box 42, Shanhua, RL Taina, Taiwan 74199, Republic of China XX RN [4] RC Sequence update by submitter RP 1-2755 RA Tsai W.S., Shih S.L., Venkatesan S.G., Aquino M., Huang Y.C., Green S.K., RA Jan F.-J.; RT ; RL Submitted (16-AUG-2010) to the INSDC. RL Virology Unit, AVRDC-the World Vegetable Center, P.O. Box 42, Shanhua, RL Taina, Taiwan 74199, Republic of China XX DR MD5; a512961b75e78909338731000de99519. XX CC On Aug 16, 2010 this sequence version replaced gi:169639943. XX FH Key Location/Qualifiers FH FT source 1..2755 FT /organism="Tomato leaf curl Philippines virus" FT /segment="DNA-A" FT /host="tomato" FT /isolate="P20" FT /mol_type="genomic DNA" FT /country="Philippines:Pangasinan" FT /isolation_source="plant with yellow leaf curling symptom" FT /db_xref="taxon:96054" FT misc_feature join(2614..2755,1..142) FT /note="intergenic region" FT gene 143..487 FT /gene="V2" FT CDS 143..487 FT /codon_start=1 FT /gene="V2" FT /product="pre-coat protein" FT /db_xref="GOA:Q8B6R5" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q8B6R5" FT /protein_id="ACA61004.1" FT /translation="MWDPLVHPFPESLHGFRCMLAIKYLQSLQNKYSPDTVGHEFLKDF FT ICILRSKNYAEAFNRYSNVVANVYNTSEAQLRESVQSPCLCPHCPRHVLQAKVMDLQAH FT VSEAQDIQNV" FT gene 303..1079 FT /gene="V1" FT CDS 303..1079 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:B1PR73" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:B1PR73" FT /protein_id="ACA61005.2" FT /translation="MPKRSIDTVTSLPMSITRRRLNYGSQYSLPASVPTVPDMSYKRRS FT WTYRPMFRKPKIYRMYRSRDVPRGCEGPCKVQSYEQRHDIAHVGKVICVSDVTRGNGLT FT HRVGKRFCVKSVYVLGKVWMDENIKTKNHTNTVMFFLVRDRRPYGTHQEFGQVFNMYDN FT EPSTATVKNDNRDRYQVLRKFQATVTGGQYASKEQAIVKRFMKINNHVTYNHQETAKYD FT NHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN" FT gene complement(1076..1477) FT /gene="C3" FT CDS complement(1076..1477) FT /codon_start=1 FT /gene="C3" FT /product="C3 protein" FT /db_xref="GOA:B1PR74" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:B1PR74" FT /protein_id="ACA61008.1" FT /translation="MDSRTGEPITAAQAENGVYTWTITNPLYFKISQHDKMPFLKNHDI FT ITVQIQFNHNLRKALGIHQCFLICKIWTHLHPQTWHFLRVFKYQCMKYLYSLGVISINN FT VIRAVDHVMYNVIQTIDVQFSHIIKFNIY" FT gene complement(1218..1625) FT /gene="C2" FT CDS complement(1218..1625) FT /codon_start=1 FT /gene="C2" FT /product="C2 protein" FT /db_xref="GOA:B1PR75" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:B1PR75" FT /protein_id="ACA61007.1" FT /translation="MQNSSPSRGHSTQVPIKVQHKISKRRPIRRRRIDLPCGCSYYLGL FT NCASYGFSHRGTHHCSSGREWRIYLDDNKSPLFQDIPTRQDAVLEKPRYHNSTNTVQPQ FT PEESVGNTSMFSDLQNLDSFTSSDLAFLKSI" FT gene complement(1525..2613) FT /gene="C1" FT CDS complement(1525..2613) FT /codon_start=1 FT /gene="C1" FT /product="replication-associated protein" FT /db_xref="GOA:B1PR76" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:B1PR76" FT /protein_id="ACA61006.2" FT /translation="MAPPRKFQINAKNYFLTYPKCCLTKEETLAQIKTLDTVTNKKFIK FT ICRELHEDGSPHLHVLIQFEGKYRCTNKRFFDLVSPTRSAHYHPNIQGAKSSSDVKSYI FT DKDGDTLEWGEFQIDGRSARGGQQSANDAYAKAINTGSKSEALNVIRELAPKDFVLQFH FT NLNANLDRIFAPPLEVFRCPFLSSSFDQVPKELEDWVSENVRDAAARPWRPMSIVIEGD FT SRTGKTMWARSMGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEDKNSPLKDWALKNAEFITLTRPL FT YSGTHQSPAQNIQEETNTQAEN" FT gene complement(2166..2456) FT /gene="C4" FT CDS complement(2166..2456) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:B1PR65" FT /protein_id="ACA61009.2" FT /translation="MGALISMCSSSSKGNTDARIRDSSIWYPQPGQHITIQTYRELNQA FT PTSNHILIRTETPSNGVSFRSMEDLLEGVNNQPMMLTPKQLTQEVSRRLLM" XX SQ Sequence 2755 BP; 741 A; 543 C; 596 G; 875 T; 0 other; accgtgggcc gcgcaaattt tttttatatt tgggcctagt gggcctgttg gatgtcggct 60 gtgaccaatg gaaacgctcc ctcatcgctt aacaatcatg ttgtcctcta tttatttctg 120 cttcatcagt tttgaattaa gaatgtggga tcctctggta catccatttc ctgaaagctt 180 acacggcttc agatgtatgc ttgccatcaa atatcttcag agcttacaga ataaatattc 240 tccggacact gttgggcatg agtttttgaa agattttatc tgcatattgc gaagtaagaa 300 ttatgccgaa gcgttcaata gatacagtaa cgtcgttgcc aatgtctata acacgtcgga 360 ggctcaatta cgggagtcag tacagtctcc ctgcctctgt ccccactgtc ccagacatgt 420 cttacaagcg aaggtcatgg acttacaggc ccatgtttcg gaagcccaag atatacagaa 480 tgtatagaag ccgtgatgtt cctcgtgggt gtgaaggccc atgtaaggtt cagtcttatg 540 aacagcgtca tgatatagcc catgtgggta aggtcatatg tgtttctgat gtcactcgtg 600 gtaatgggct cacacatcgt gtgggaaaga gattttgtgt aaagtctgtg tatgtgttgg 660 ggaaggtctg gatggatgag aacatcaaga ctaagaatca cacaaacact gtcatgtttt 720 ttttagttcg tgataggaga ccctatggga ctcaccaaga gtttggtcag gtttttaaca 780 tgtatgataa tgagcctagt actgcaacag taaaaaatga taatagagat cgataccaag 840 ttcttcgtaa atttcaagct acagtgactg gaggtcagta tgcaagcaag gagcaagcaa 900 tagtcaagag gttcatgaag attaacaacc atgttactta caatcatcaa gagactgcga 960 agtacgataa ccatacagag aacgctttac tgttgtatat ggcatgtact catgccagta 1020 atccagtgta tgctactttg aaaatcagaa tctatttcta tgattctgtt caaaattaat 1080 aaatattgaa ttttattata tgagaaaatt gtacatctat tgtttgaatt acattgtaca 1140 tcacatgatc gactgcccta attacattgt ttatgctaat aacccctaaa ctatacaaat 1200 acttcataca ctgatattta aatactctta agaaatgcca agtctgagga tgtaaatgag 1260 tccagatttt gcagatcaga aaacattgat gtattcccaa cgctttcctc aggttgtggt 1320 tgaactgtat ttgtactgtt atgatatcgt ggtttttcaa gaacggcatc ttgtcgtgtt 1380 gggatatctt gaaataaagg ggatttgtta tcgtccaggt atatacgcca ttctctgcct 1440 gagctgcagt gatgggttcc cctgtgcgag aatccatatg aagcgcaatt aagtcctaga 1500 tagtaagagc agccgcaagg aagatcaatt ctccgcctgc gtattggtct cctcttggat 1560 attttgtgct ggactttgat gggtacctga gtagagtggc ctcgtgaggg tgatgaattc 1620 tgcatttttt agtgcccagt ctttgagtgg agaattttta tcctcatcca agtactcttt 1680 atacgacgat gtaggtcctg gattgcatag gaagattgtt gggatcccac ctttaatttg 1740 aattggtttc ccgtactttg tgttgctttg ccagtccctt tgggccccca taaactcttt 1800 aaaatgcttt agatagtggg ggtcgacgtc atcaatgacg ttgtaccagg catcattact 1860 gtacaccttt ggactaaggt ccagatgtcc acacaaataa ttatgtggac ccatagacct 1920 agcccacatc gtcttccccg tcctgctatc tccttctatg acaatactca tgggtctcca 1980 tggccgcgca gcggcatccc taacattctc ggaaacccag tcttcaagtt cttttggaac 2040 ttggtcgaaa gaagaagaaa gaaaaggaca acgaaaaacc tctaaaggag gtgcaaagat 2100 cctatctaaa ttggcattta aattatgaaa ttgtaaaaca aaatcttttg gagctaactc 2160 cctaattaca ttaagagcct ccgacttact tcctgtgtta attgctttgg cgtaagcatc 2220 attggctgat tgttgacccc ctctagcaga tcttccatcg atctgaaact caccccattc 2280 gagggtgtct ccgtccttat caatatatga tttgacgtcg gagcttgatt tagctccctg 2340 tatgtttgga tggtaatgtg ctgacctggt tggggatacc agatcgaaga atctcttatt 2400 cgtgcatctg tatttccctt cgaactggat gagcacatgg agatgagggc tcccatcttc 2460 gtgcagttct ctgcagattt tgatgaattt tttgtttgtt acagtatcta gtgtctttat 2520 ctgggcaagg gtttcctctt ttgtaagaca gcatttggga tatgtaagaa aataattttt 2580 ggcatttatt tggaattttc tgggtggtgc catttgactc agtcaatggg taccaattga 2640 gaggatttca ttctactcag ggtatcggta cattggtacc catatatact tggttaccta 2700 atggcataat tgtaattttt ttatgggctt ccaagcggcc cacgactata atatt 2755 //