ID   EU418793; SV 1; linear; genomic RNA; STD; VRL; 1377 BP.
XX
AC   EU418793;
XX
DT   13-FEB-2008 (Rel. 94, Created)
DT   13-FEB-2008 (Rel. 94, Last updated, Version 1)
XX
DE   Tobacco etch virus isolate UWI 5 HC-Pro protein (HC-Pro) gene, partial cds.
XX
KW   .
XX
OS   Tobacco etch virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1377
RA   Spence A.;
RT   "HC-Pro Amplification of TEV Infecting Peppers in Jamaica";
RL   Unpublished.
XX
RN   [2]
RP   1-1377
RA   Spence A.;
RT   ;
RL   Submitted (21-JAN-2008) to the INSDC.
RL   Department of Basic Medical Sciences, Biochemistry Section, The University
RL   of the West Indies, Molecular Biology Bldg., 4 St. Johns Close, Mona,
RL   Kingston 7, Jamaica
XX
DR   MD5; 55440c84ba891be3952d24466458c315.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1377
FT                   /organism="Tobacco etch virus"
FT                   /host="Scotch bonnett peppers"
FT                   /isolate="UWI 5"
FT                   /mol_type="genomic RNA"
FT                   /country="Jamaica:Bodles Agriculture Research Station, St.
FT                   Catherine and UWI Botany Gardens, St. Andrew"
FT                   /db_xref="taxon:12227"
FT   gene            <1..>1377
FT                   /gene="HC-Pro"
FT   CDS             <1..>1377
FT                   /codon_start=1
FT                   /gene="HC-Pro"
FT                   /product="HC-Pro protein"
FT                   /db_xref="GOA:B1A3P8"
FT                   /db_xref="InterPro:IPR001456"
FT                   /db_xref="InterPro:IPR031159"
FT                   /db_xref="InterPro:IPR042308"
FT                   /db_xref="UniProtKB/TrEMBL:B1A3P8"
FT                   /protein_id="ABZ80931.1"
FT                   /translation="SDKSISEAFFIPYSTKFLELRPDGISHECTRGVSVERCGEVAAIL
FT                   TQALSPCGKITCKRCVVETPDIVGSESGESVTNQGKLLTMLREQYPDFPMAEKLLTRFL
FT                   QQKSLVNTNLTACVSVKQLIGDRKQAPFTHVLAVSEILFKGNRLTGTDLEEASTHMLEI
FT                   ARFLNNRTENMRIGHLGSFRNKISSKAHVNNALMCDNQLDQNGNFIWGLRGAHAKRFLK
FT                   GFFTEIDPNEGYDKYVIRKHIRGSRKLAIGNLIMSTDFQTLRQQIQGETIERKEIGNYC
FT                   ISMRNGNYVYPCCCVTLEDGKAQYSDLKPPTKRHLVIGNSGDSKYLDFPVLNEEKMYIA
FT                   NEGYCYMNIFFALLVNVKEEDAKDFTKFIRDTIVPKLGAWPTMQDVATACYLLSILYPD
FT                   VLSAELPRILVDHDNKTMHVLDSYGSKTTGYHMLKMNTTSQLIEFVHSGLESEMKTYNV
FT                   G"
XX
SQ   Sequence 1377 BP; 442 A; 272 C; 308 G; 355 T; 0 other;
     agcgacaagt caatctctga ggcatttttt ataccatact ctacgaaatt cttggagttg        60
     agaccagatg gaatctccca tgagtgtaca agaggtgtat cagttgagcg gtgcggtgag       120
     gtggctgcaa tcctgacaca agcactttca ccgtgtggta agatcacatg taaacgttgc       180
     gtggttgaaa cacctgacat tgttggaagt gagtcgggag aaagcgtcac taaccaaggc       240
     aagctcctta caatgttgag agaacagtat ccagatttcc caatggccga gaaactactc       300
     acaaggtttt tgcaacagaa atcactagta aacacaaatt tgacggcctg cgtgagcgtc       360
     aaacagctca ttggagaccg taaacaagct ccattcacac atgtactggc tgttagcgaa       420
     attctgttca aaggcaatag actgacagga actgatctcg aagaggcaag cacgcacatg       480
     cttgaaatag caaggttctt aaacaatcgc actgagaata tgcgcattgg ccacctcggt       540
     tccttcagaa acaaaatatc atcaaaggcc catgtgaata acgcactcat gtgtgataat       600
     caactcgatc agaatgggaa ttttatttgg gggctaaggg gtgcacacgc aaagaggttt       660
     ctcaaaggat tttttactga gattgaccca aatgaaggat acgataagta tgttatcagg       720
     aaacatatca ggggtagcag aaagctagca attggcaatc tgataatgtc aactgacttc       780
     caaacgctca ggcaacagat tcaaggcgaa actattgagc gtaaagaaat tgggaattac       840
     tgcatttcaa tgcgaaacgg taattacgta tacccatgtt gttgtgttac ccttgaagat       900
     ggtaaggctc aatactcaga tttaaagccc ccaacaaaga gacatctggt cattggcaac       960
     tctggcgatt caaagtacct ggactttcca gttcttaatg aagagaaaat gtatatagct      1020
     aacgaaggtt attgctacat gaacattttc tttgctctac tagtgaatgt caaagaagag      1080
     gatgcaaagg acttcaccaa gtttataagg gacacaattg ttccaaagct tggagcgtgg      1140
     ccaacgatgc aggatgttgc aactgcatgc tacttacttt ctattcttta cccagatgtc      1200
     ctgagtgctg agttacccag aattttggtt gatcatgaca acaaaacaat gcatgttttg      1260
     gattcgtatg ggtctaaaac gacagggtac cacatgttga agatgaacac aacatcccaa      1320
     ctaattgaat tcgttcattc aggattggaa tccgaaatga aaacttataa tgttgga         1377
//