ID EU332324; SV 1; linear; genomic RNA; STD; VRL; 5664 BP. XX AC EU332324; XX DT 22-JAN-2008 (Rel. 94, Created) DT 07-JUL-2011 (Rel. 109, Last updated, Version 2) XX DE Barley yellow dwarf virus-PAV isolate 05ZZ9 RNA-dependent RNA polymerase, DE P1, aphid transmission protein, coat protein, movement protein, and P6 DE genes, complete cds. XX KW . XX OS Barley yellow dwarf virus PAV OC Viruses; Riboviria; Luteoviridae; Luteovirus. XX RN [1] RC Publication Status: Online-Only RP 1-5664 RX DOI; 10.1371/journal.pone.0016896. RX PUBMED; 21326861. RA Wu B., Blanchard-Letort A., Liu Y., Zhou G., Wang X., Elena S.F.; RT "Dynamics of molecular evolution and phylogeography of Barley yellow dwarf RT virus-PAV"; RL PLoS One 6(2):E16896-E16896(2011). XX RN [2] RP 1-5664 RA Liu S., Wang X., Liu Y., Zhou G.; RT "Population genetic diversity of BYDV-PAV from China"; RL Unpublished. XX RN [3] RP 1-5664 RA Liu S., Wang X., Liu Y., Zhou G.; RT ; RL Submitted (07-DEC-2007) to the INSDC. RL Plant Pathology, Institute of Plant Protection, Chinese Acadamy of RL Agricultural Sciences, West Yuanmingyuan Road No.2, Beijing 100094, China XX DR MD5; bbf2bbe53dc3633362363b796bd18b23. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF00434; BTE. DR RFAM; RF01508; BYDV_5_UTR. XX FH Key Location/Qualifiers FH FT source 1..5664 FT /organism="Barley yellow dwarf virus PAV" FT /host="wheat" FT /isolate="05ZZ9" FT /serotype="PAV" FT /mol_type="genomic RNA" FT /country="China:Zhengzhou" FT /db_xref="taxon:2169986" FT CDS join(142..1161,1161..2747) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="RdRp; P1-P2 fusion created by -1 ribosomal FT frameshift" FT /db_xref="GOA:B0FKV2" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:B0FKV2" FT /protein_id="ABY73643.1" FT /translation="MVFFEMLIGASVKAVKDFISHCYSRLKSIYYSFKRWLLEISGQFK FT AHDAFVNMCFGHIADIEDFEAELAEEYAEKEEEIEEARSLLRLLTAQKSKSGVDEAWTD FT FFLKSRGGVYAPLNCEPKSIELDAKADKLEKLLEDMHLFEVRAAKTYIKEKGRGFINCW FT NDLRSRLQLVKSVKDEAKDNIKAASKIGVEFSAPTNIADLYTFTEVTKVETGLTKETTR FT VVNGEEETSTVPLVEDVRKIKDDEVSRESASNWIREVIKLKNSTLSADELSLATIARYV FT ENLGEKYKLDIASKTYLKQCAMISVPIPSQKDIKTKMVIQSPAARALRERVAVLDSQGF FT LEGLCTASGFESPFTILGLPEIAVTDGARLRKVSSNINYLTQTHLGLVYKAPNASLHNA FT LVAIERRVFTVGKGDSAIYPPHPEYDIFLETMGYFAESIVNKVGYCKTYTPQQLALSYS FT AGKRAQYFKAIESLKKEPYQMKDSNVQAFLKKEKHWMTKAIAPRLICPRSKRYNIILGT FT RLKFNEKKIMHAIDGMFGSPTVLSGYDSFTQGRIIASKWQKFASPVAIGVDASRFDQHV FT SEQALKWEHGIYNGIFGDNELALALEHQLVNNIKMFVEDKMLTFKVKGHRMSGDINTSM FT GNKLIMCGMVHAYFKKLGVEAELCNNGDDCVIITERTNEHLFSGMYDHFLKYGFNMVTE FT TPVYELGELEFCQSKPVRIGGNYRMVRRPDCIGKDSNTLLSMRNQSDVKSYMSAVAQCG FT LVLNAGVPILESFYRCLYRSSGYKKVSEEYIKNVISYGTDERLQGRRTFEETPITTDNR FT MSYWESFGVDPKIQQLVERYYDNLTVSAQLQSVKVTSPHLQSILLSIPENNSHNEY" FT CDS 142..1164 FT /codon_start=1 FT /product="P1" FT /note="ORF1" FT /db_xref="GOA:B0FKK7" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:B0FKK7" FT /protein_id="ABY73644.1" FT /translation="MVFFEMLIGASVKAVKDFISHCYSRLKSIYYSFKRWLLEISGQFK FT AHDAFVNMCFGHIADIEDFEAELAEEYAEKEEEIEEARSLLRLLTAQKSKSGVDEAWTD FT FFLKSRGGVYAPLNCEPKSIELDAKADKLEKLLEDMHLFEVRAAKTYIKEKGRGFINCW FT NDLRSRLQLVKSVKDEAKDNIKAASKIGVEFSAPTNIADLYTFTEVTKVETGLTKETTR FT VVNGEEETSTVPLVEDVRKIKDDEVSRESASNWIREVIKLKNSTLSADELSLATIARYV FT ENLGEKYKLDIASKTYLKQCAMISVPIPSQKDIKTKMVIQSPAARALRERVAVLDSQGF FT " FT CDS 2861..4801 FT /codon_start=1 FT /transl_except=(pos:3458..3460,aa:OTHER) FT /product="aphid transmission protein" FT /note="P3-P5 fusion created by ribosomal read-through of FT the ORF3 stop codon" FT /db_xref="GOA:B0FKV4" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:B0FKV4" FT /protein_id="ABY73648.1" FT /translation="MNSVGRRGPRRANNGTRRRRRRAIRPVVVVQPNRTGPRRRNARRA FT RGRRPGSVFGPKRGAEVFVFSVDNLKANSSGILKFGPDLSQCPAVSDGVLKSYHNYKIS FT SINVEFRTHASATTSGAMFIELDTSCKQSALSSYINSFTISKSASKSFRAAEIGGTQFQ FT ATSVNQFFLLYKANGTTTDIAGQFIIRIELHLMTAKXVDSSTPEPKPTPAPTPAPTPEP FT KPEPTPAPPPKRFFEYVGTPIGVISTRENTDSISVSKLGGQSMQYIENEKCETKTIDSF FT WSTNNNVSAQAAFVFPVPEGSYSVNISCEGLQSVDHIGGNEDGYWIGLIAYSNSSGDNW FT GVGNYKGCVFTNFLATNTWRPGHKDLKLNDCQFTDGQIVERDAVMSFHVEASGKDACFY FT LMAPKTMKTDKYNYVVSYGGYTNKRMEFGTISVTCDESDVEALRIIRHSECPTRVNNIL FT IDEGYIQPLSTITDQGLCDVQTPGQDQEVVEEDRQTVSTESDIALKEYEAAIAEIPDAE FT EDALPSREQLSSKPVDTSGEEIPKPRPPSNEVLGVYQGQPIYPEDVPSGTRQKLRDAAK FT APSTLLYDKTPKRSKSILSRFIEGNRSSVESSAPSTATTSNLTREQLREYTRIRNTLGL FT TAAKEYKARLL" FT CDS 2861..3460 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3; P3" FT /db_xref="GOA:B0FKK9" FT /db_xref="InterPro:IPR001517" FT /db_xref="UniProtKB/TrEMBL:B0FKK9" FT /protein_id="ABY73645.1" FT /translation="MNSVGRRGPRRANNGTRRRRRRAIRPVVVVQPNRTGPRRRNARRA FT RGRRPGSVFGPKRGAEVFVFSVDNLKANSSGILKFGPDLSQCPAVSDGVLKSYHNYKIS FT SINVEFRTHASATTSGAMFIELDTSCKQSALSSYINSFTISKSASKSFRAAEIGGTQFQ FT ATSVNQFFLLYKANGTTTDIAGQFIIRIELHLMTAK" FT CDS 2901..3362 FT /codon_start=1 FT /product="movement protein" FT /note="P4; ORF4 translated via a leaky scanning mechanism" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:B0FKL0" FT /protein_id="ABY73646.1" FT /translation="MAHEGGAVEQFGQWLWSSPIEQDPDDEMLDAQEEEGQVLYLDQNA FT GLRYSYSQSTTLRPTPPGSSNSVPIYRNAQRFQTEYLSPTTITRSQVSTLSLEHTRPPL FT RRALCLLNSTPRASNQPYLATLTHSPSANPPQSPSAQRRLEGPSSRRHR" FT CDS 4930..5052 FT /codon_start=1 FT /product="P6" FT /note="ORF6; highly variable sequence" FT /db_xref="InterPro:IPR009426" FT /db_xref="UniProtKB/TrEMBL:B0FKL1" FT /protein_id="ABY73647.1" FT /translation="MDDLRIIALCALSSTILFTIALVSSWCASCCKFIDAACSV" XX SQ Sequence 5664 BP; 1597 A; 1362 C; 1353 G; 1352 T; 0 other; tgaagattga ccatctcaca aaagctgtta cgtgcttgta acacactaca cactcgtttt 60 gtaatcgaga agtagttgct acagagtcct acagttgcct gacacgcctg ttgccccctt 120 cttccccttt cattcgccat catggtgttc tttgagatgc tcatcggtgc cagcgtaaag 180 gctgtcaaag acttcattag ccactgctat tccagactca agagtatata ctactctttc 240 aagagatggc tgcttgagat atccgggcaa ttcaaggccc atgacgcctt tgtcaacatg 300 tgctttgggc acatcgctga cattgaggac ttcgaggcgg agctcgctga ggagtacgcc 360 gagaaggagg aggagatcga ggaagcgcga agcttgctcc gcttgttaac tgcccagaag 420 tctaaatctg gggtggacga ggcttggacc gacttctttt tgaagtcgag aggcggcgtt 480 tatgcgccac ttaactgcga gccaaagtcc atagagcttg atgctaaagc ggacaagttg 540 gagaagctcc ttgaggacat gcacctgttt gaggtgcgcg cggccaagac ctacatcaag 600 gagaagggcc gtggatttat caactgctgg aatgaccttc gatcaaggtt gcagttggtg 660 aagtctgtca aagacgaggc caaggacaac attaaagcgg cctccaagat tggtgtggag 720 ttctctgctc caaccaatat tgctgatctc tacacattca ctgaggttac aaaggtagag 780 acaggtctta ccaaggagac gactagggtt gtcaacgggg aggaggagac ctccaccgta 840 cccctggttg aggacgtccg gaagattaag gacgacgaag tcagcaggga gagtgcctcc 900 aattggatca gggaggtaat caaattgaaa aattccaccc tttctgctga tgagctttcc 960 ctggcaacca tcgccaggta tgtagaaaat ttaggggaaa aatacaaact tgacattgca 1020 tccaaaacat atcttaagca atgtgcaatg atttcggtac caattccctc ccaaaaagac 1080 ataaaaacaa agatggtgat ccaaagccct gctgcccgtg ctcttcgtga gcgcgtggca 1140 gttcttgact cccagggttt ttagaggggc tctgtaccgc ctccggtttt gaaagcccat 1200 ttaccattct tggcttaccg gagatagcgg tcacagacgg agcccggctc cgtaaggtta 1260 gtagtaatat taattacctt acccagaccc atctaggcct tgtatataaa gcacccaatg 1320 catccctgca caacgcgctc gtagccatcg aaaggagagt gtttacagta ggaaaggggg 1380 attccgctat ctaccccccc caccctgaat atgacatttt tttagaaaca atgggctact 1440 ttgctgagtc cattgtcaac aaggtgggat actgcaaaac atacactcct cagcaactgg 1500 ctcttagtta cagtgcaggg aagagggccc agtatttcaa agccattgag tccttgaaga 1560 aggaaccata tcaaatgaag gactcaaacg tgcaggcatt cctcaagaag gagaaacact 1620 ggatgaccaa agccatcgcc ccgcgcctga tttgcccccg ctccaagcgg tacaatatca 1680 tcctaggaac tcgtttgaaa ttcaacgaga agaagatcat gcatgccatt gacggtatgt 1740 ttggatcccc cactgtgctt tcaggctatg atagctttac ccaaggcaga atcatagcca 1800 gtaagtggca aaagtttgca tcacccgttg ctatcggtgt tgatgctagc cgctttgacc 1860 aacatgtgtc tgagcaggcg cttaagtggg aacacgggat atacaatggc atttttggcg 1920 acaatgaatt ggcccttgct ctcgaacatc agcttgtaaa taatatcaag atgttcgttg 1980 aggataagat gctaaccttc aaagttaagg gccatagaat gtcaggggac attaacacca 2040 gcatgggaaa caagctcatc atgtgtggca tggtgcatgc ttactttaag aagctgggtg 2100 ttgaagcgga actttgcaac aatggagatg attgtgtcat cataactgaa aggactaatg 2160 aacacctttt cagtggaatg tatgaccatt tccttaaata cggcttcaac atggtgacgg 2220 aaaccccggt ttacgaactc ggggaacttg aattttgcca atctaaaccc gtcagaattg 2280 gtggcaatta tagaatggtc cgtaggcccg actgcatagg aaaagatagt aacacacttt 2340 tgagcatgcg caaccaatcc gacgtcaaaa gctacatgtc ggctgtggct cagtgtggtc 2400 tcgttttgaa tgcgggtgta cccatactcg aaagcttcta ccgctgtctg tacagaagct 2460 cggggtacaa gaaagtaagt gaggaatata tcaaaaacgt catatcatat ggaacagatg 2520 aacgccttca aggtagacgt acctttgagg agacacctat caccactgac aatcgtatgt 2580 catattggga atcatttgga gttgacccta agattcaaca acttgtcgag aggtactacg 2640 acaatcttac ggtaagtgcc caactccaga gtgtgaaggt gacatctcca catctgcaat 2700 caatcctcct ctccattccg gagaacaact cgcacaacga atattaatta ccaaatctta 2760 gccgggtttg ggatagggtt tattactagt attccctgta cattagctct cacgtacttt 2820 atttacaata aagtttcaga caccactaga gaggtggtga atgaattcag taggccgtag 2880 aggacctaga agagcaaata atggcacacg aaggcggcgc cgtagagcaa ttcggccagt 2940 ggttgtggtc cagcccaatc gaacaggacc cagacgacga aatgctcgac gcgcaagagg 3000 aagaaggcca ggttctgtat ttggaccaaa acgcggggct gaggtattcg tattctcagt 3060 cgacaacctt aaggccaact cctccgggat cctcaaattc ggtcccgatt tatcgcaatg 3120 cccagcggtt tcagacggag tacttaagtc ctaccacaat tacaagatct caagtatcaa 3180 cgttgagttt agaacacacg cgtccgccac tacgtcgggc gctatgttta ttgaactcga 3240 cacctcgtgc aagcaatcag ccttatctag ctacattaac tcattcacca tcagcaaatc 3300 cgcctcaaag tccttccgcg cagcggagat tggagggacc cagttccagg cgacatcggt 3360 gaatcaattc tttcttttat ataaggcaaa tggcactact actgatattg cagggcagtt 3420 catcatcaga attgagcttc atctgatgac tgccaaatag gtagactcct caacaccgga 3480 accgaaaccc acaccagctc caacacctgc cccaacacct gaaccaaaac cagagccaac 3540 accagcacct ccccccaagc gtttctttga gtatgttggg actccgatag gggtcatatc 3600 tactcgagag aacaccgaca gcatatcggt gtccaagctc ggaggccagt cgatgcagta 3660 tatagaaaac gagaagtgtg aaactaaaac catcgactcc ttctggagca caaacaacaa 3720 cgtttcggca caagctgctt tcgtttttcc agtgccagaa gggtcgtaca gtgtgaatat 3780 ctcgtgtgaa ggtttacaat ccgttgacca catcggtggc aacgaagatg gctattggat 3840 tgggctcatt gcctactcca attcatcagg cgataactgg ggtgtaggta actacaaagg 3900 gtgtgtgttt acaaattttc tggcaacgaa cacctggaga ccaggacaca aggatttgaa 3960 acttaacgat tgccagttca cagatggaca aatagttgaa agggacgcag tcatgtcttt 4020 tcatgtagag gcttctggca aagatgcttg cttctacctg atggctccca aaacaatgaa 4080 aacagacaag tacaactatg ttgtctcgta tggagggtac acgaacaaaa gaatggagtt 4140 cggtaccatt tctgtgacat gtgatgaatc cgatgttgag gcactccgca taatccggca 4200 ctctgagtgc cctacccgcg taaataacat tctaattgat gagggatata ttcaacctct 4260 ttccaccata accgaccaag ggctgtgtga tgtgcaaact cccggccaag accaagaggt 4320 ggttgaggaa gatagacaaa ccgtttccac tgaatctgat atagcgctca aggaatatga 4380 agcggctatc gctgaaatcc ctgacgctga agaggatgct ttgccctctc gggaacaact 4440 ctcatctaaa ccagttgaca cgtcagggga ggagatcccc aaacccagac ccccaagcaa 4500 tgaggttctg ggtgtttacc aaggacagcc tatctatcct gaagacgtgc catctggtac 4560 aaggcaaaag ctacgtgatg ccgccaaagc accttctacc ctgttgtacg acaagacccc 4620 aaaacggtcc aaatctattt tgtccaggtt catagaaggg aataggtcct ctgtagaatc 4680 ttctgccccc tctaccgcta ctacatccaa tctaactagg gagcagctcc gggaatacac 4740 ccgcattagg aataccctag gtttaacagc tgcaaaagag tacaaggctc gtcttttgtg 4800 aagacaacac cactcgcaca aactggatcc tgggaaacag gcaggactta ggttcgtaag 4860 ctcgggtgac tggaaggtgg gctgtcaacc caccaccgac tcaccgccgt atcgtattgt 4920 gtgtggccga tggatgatct tcgcattatc gccctctgtg ctctgtcatc aactatactg 4980 tttaccattg cgttggtgag tagttggtgt gcaagctgtt gtaagttcat agacgcagct 5040 tgttctgtgt aagctgcaac caaaaatatc gcggagcttt tgctcagtga gaggattaac 5100 gaccctcggt aatggctgat cttggcaggc ctgaataacc tgctatagga caactggaaa 5160 cccaccagtg atcaaataag gtagcttact tctgagctgt acactgtccc tgcgcaatcg 5220 gggtaaacaa ctataaccac ccagctcgat gaaatgagag tggaggtggc ggagtgggtg 5280 acttcgtgat gtacacccga gcgtcaggtt tgaagacgcc ataaaacaca acgagatgag 5340 aacctcgtta taaaagttcc tcggctgata cacccagtcg actggacctg ctggcatacc 5400 cttgatacga aacaagggct tttgagagcc actacctgtg atgcaaggta gggtaagagt 5460 cttagcaacc tctgcacttg gaagtggaca taaaccatag caatccagca gcatcccaga 5520 agagagtttt cctcactagg tgaaaacgtg ccacgggcct gtttcaagca atctagcttt 5580 gcttgaaaca gtatttcata gaagcaattc tatgagggga ctggattttg actgccgaca 5640 ctcgcaagag aagttcggca tccc 5664 //