ID EU332314; SV 1; linear; genomic RNA; STD; VRL; 5664 BP. XX AC EU332314; XX DT 22-JAN-2008 (Rel. 94, Created) DT 07-JUL-2011 (Rel. 109, Last updated, Version 2) XX DE Barley yellow dwarf virus-PAV isolate 05WH6 RNA-dependent RNA polymerase, DE P1, aphid transmission protein, coat protein, movement protein, and P6 DE genes, complete cds. XX KW . XX OS Barley yellow dwarf virus PAV OC Viruses; Riboviria; Luteoviridae; Luteovirus. XX RN [1] RC Publication Status: Online-Only RP 1-5664 RX DOI; 10.1371/journal.pone.0016896. RX PUBMED; 21326861. RA Wu B., Blanchard-Letort A., Liu Y., Zhou G., Wang X., Elena S.F.; RT "Dynamics of molecular evolution and phylogeography of Barley yellow dwarf RT virus-PAV"; RL PLoS One 6(2):E16896-E16896(2011). XX RN [2] RP 1-5664 RA Liu S., Wang X., Liu Y., Zhou G.; RT "Population genetic diversity of BYDV-PAV from China"; RL Unpublished. XX RN [3] RP 1-5664 RA Liu S., Wang X., Liu Y., Zhou G.; RT ; RL Submitted (07-DEC-2007) to the INSDC. RL Plant Pathology, Institute of Plant Protection, Chinese Acadamy of RL Agricultural Sciences, West Yuanmingyuan Road No.2, Beijing 100094, China XX DR MD5; aac3d710d3ed0a8777bed088e97bedca. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF00434; BTE. DR RFAM; RF01508; BYDV_5_UTR. XX FH Key Location/Qualifiers FH FT source 1..5664 FT /organism="Barley yellow dwarf virus PAV" FT /host="infected grass" FT /isolate="05WH6" FT /serotype="PAV" FT /mol_type="genomic RNA" FT /country="China:Wuhan" FT /db_xref="taxon:2169986" FT CDS join(142..1161,1161..2747) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="RdRp; P1-P2 fusion created by -1 ribosomal FT frameshift" FT /db_xref="GOA:B0FKP2" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:B0FKP2" FT /protein_id="ABY73583.1" FT /translation="MVFFEMLIGASVKAVKDFISHCYSRLKSIYYSFKRWLLEISGQFK FT AHDAFVNMCFGHIADIEDFEAELAEEYAEKEEEIEEARSLLRLLTAQKSKSGVDEAWTD FT FFLKSRGGVYAPLNCEPKSIELDAKADKLEKLLEDMHLFEVRAAKTYIKEKGRGFINCW FT NDLRSRLQLVKSVKDEAKDNIKAASKIGVEFSAPTNIADLYTFTEVTKVETGLTKETTR FT VVNGEEETSTVPLVEDVRKIKDDEVSRESASNWIREVIKLKNSTLSADELSLATIARYV FT ENLGEKYKLDIASKTYLKQCAMISVPIPSQKDIKTKMVIQSPAARALRERVAVLDSQGF FT LEGLCTASGFESPFTILGLPEIAVTDGARLRKVSSNINYLTQTHLGLVYKAPNASLHNA FT LVAIERRVFTVGKGDSAIYPPHPEYDIFSETMGYFAESIVNKVGYCKTYTPQQLALSYS FT AGKRAQYFKAIESLKKEPYQLKDSNVQAFLKKEKHWMTKAIAPRLICPRSKRYNIILGT FT RLKFNEKKIMHAIDGMFGSPTVLSGYDSFTQGRIIASKWQKFASPVAIGVDASRFDQHV FT SQQALKWEHGIYNGIFGDTELALALEHQLVNNIKMFVEDKMLTFKVRGHRMSGDINTSM FT GNKLIMCGMMHAYFKKLGVEAELCNNGDDCVIITERANEHLFGGMYGHFLKYGFNMVTE FT TPVYELGELEFCQSRPVRIGGNYRMIRRPDCIGKDSNTLLSMRNESDVKSYMSAVAQCG FT LVLNAGVPILESFYRCLYRSSGYKKVSEEYIKNVISYGTDERLQGRRTFEETPITTDNR FT MSYWESFGVDPKIQQLVERYYDNLTVSAQLQSVKVTSPHLQSILLSIPENNSHNEY" FT CDS 142..1164 FT /codon_start=1 FT /product="P1" FT /note="ORF1" FT /db_xref="GOA:B0FKK7" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:B0FKK7" FT /protein_id="ABY73584.1" FT /translation="MVFFEMLIGASVKAVKDFISHCYSRLKSIYYSFKRWLLEISGQFK FT AHDAFVNMCFGHIADIEDFEAELAEEYAEKEEEIEEARSLLRLLTAQKSKSGVDEAWTD FT FFLKSRGGVYAPLNCEPKSIELDAKADKLEKLLEDMHLFEVRAAKTYIKEKGRGFINCW FT NDLRSRLQLVKSVKDEAKDNIKAASKIGVEFSAPTNIADLYTFTEVTKVETGLTKETTR FT VVNGEEETSTVPLVEDVRKIKDDEVSRESASNWIREVIKLKNSTLSADELSLATIARYV FT ENLGEKYKLDIASKTYLKQCAMISVPIPSQKDIKTKMVIQSPAARALRERVAVLDSQGF FT " FT CDS 2861..4801 FT /codon_start=1 FT /transl_except=(pos:3458..3460,aa:OTHER) FT /product="aphid transmission protein" FT /note="P3-P5 fusion created by ribosomal read-through of FT the ORF3 stop codon" FT /db_xref="GOA:B0FKP4" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:B0FKP4" FT /protein_id="ABY73588.1" FT /translation="MNSVGRRGPRRANNGTRRRRRRAIRPVVVVRPNRTGPRRRNARRA FT RGRRPGSVFGPKRGAEVFVFSVDNLKANSSGILKFGPDLSQCPAVSDGVLKSYHNYKIS FT SINVEFRTHASATTSGAMFIELDTSCKQSALSSYINSFTISKSASKSFRAAEIGGTQFQ FT ATSVNQFFLLYKANGTTTDIAGQFIIRIELHLMTAKXVDSSTPEPKPTPAPTPAPAPEP FT KPEPTPAPPPKRFFEYVGTPVGVISTRENTDSISVSKLGGQSMQYIENEKCETKTIDSF FT WSTNNNVSAQAAFVFPVPEGSYSVNISCEGLQSVDHIGGNEDGYWIGLIAYSNSSGDNW FT GVGNYKGCVFTNFLATNTWRPGHKDLKLNDCQFTDGQIVERDAVMSFHVEASGKDACFY FT LMAPKTMKTDKYNYVVSYGGYTNKRMEFGTISVTCDESDVEAFRMTRHSECPTRVNNIL FT IDEGYCQPLSTITDQGLCDVQTPGQDQEVVEEDRQTVSTESDIALKEYEAAIAEIPDAE FT EDALPSREQLSSKPVDTSGEEIPKPRPLSNEVLGVYQGQTIYADDVPPGTRQKLRDAAK FT APSTLLYDKTPKRSKSILSRFLEGNRSSVESAAPSTATTSNLTREQLREYTRIRNTLGL FT TAAKEYKARLS" FT CDS 2861..3460 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3; P3" FT /db_xref="GOA:B0FKP5" FT /db_xref="InterPro:IPR001517" FT /db_xref="UniProtKB/TrEMBL:B0FKP5" FT /protein_id="ABY73585.1" FT /translation="MNSVGRRGPRRANNGTRRRRRRAIRPVVVVRPNRTGPRRRNARRA FT RGRRPGSVFGPKRGAEVFVFSVDNLKANSSGILKFGPDLSQCPAVSDGVLKSYHNYKIS FT SINVEFRTHASATTSGAMFIELDTSCKQSALSSYINSFTISKSASKSFRAAEIGGTQFQ FT ATSVNQFFLLYKANGTTTDIAGQFIIRIELHLMTAK" FT CDS 2901..3362 FT /codon_start=1 FT /product="movement protein" FT /note="P4; ORF4 translated via a leaky scanning mechanism" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:B0FKP6" FT /protein_id="ABY73586.1" FT /translation="MAHEGGAVEQFGQWLWSGPIEQDPDDEMLDAQEEEGQVLYLDQNA FT GLRYSYSQSTTLRPTPPGSSNSVPIYRNAQRFQTEYLSPTTITRSQVSTLSLEHTRPPL FT RRALCLLNSTPRASNQPYLATLTHSPSANPPQSPSAQRRLEGPSSRRHR" FT CDS 4930..5052 FT /codon_start=1 FT /product="P6" FT /note="ORF6; highly variable sequence" FT /db_xref="InterPro:IPR009426" FT /db_xref="UniProtKB/TrEMBL:B0FKL1" FT /protein_id="ABY73587.1" FT /translation="MDDLRIIALCALSSTILFTIALVSSWCASCCKFIDAACSV" XX SQ Sequence 5664 BP; 1579 A; 1367 C; 1366 G; 1352 T; 0 other; tgaagattga ccatctcaca aaagctgtta cgtgcttgta acacactaca cactcgtttt 60 gtaatcgaga agtagttgca atagagtcct acagttgcct gacacgcctg tagccccctt 120 cttccccttt cactcgccat catggtgttc tttgagatgc tcatcggtgc cagcgtgaag 180 gctgtcaaag acttcatcag ccactgctat tccagactaa agagtattta ctactctttc 240 aagagatggc tgcttgaaat atctgggcaa ttcaaggccc atgacgcctt tgtcaacatg 300 tgctttgggc acatcgctga catcgaggac ttcgaggcgg agctcgctga ggagtacgcc 360 gagaaggagg aggagatcga ggaagcgcga agcttgctcc gcttactaac tgcccagaag 420 tctaaatctg gggtggacga ggcttggacc gacttctttt tgaagtcgag aggcggcgtt 480 tatgcgccac ttaactgcga gccgaagtcc atagagcttg atgctaaagc ggacaagctg 540 gaaaagctcc ttgaggacat gcacctgttc gaggtgcgcg cggccaagac ctacatcaaa 600 gagaagggcc gtggattcat caactgctgg aatgacctcc ggtcaaggtt gcagttggtg 660 aagtccgtca aagacgaggc caaggacaac attaaagcgg cctccaagat tggtgtggag 720 ttttctgctc caaccaatat tgctgatctc tacacattca ctgaggttac aaaggtagag 780 acaggtctta ccaaggagac gactagggtt gtcaacgggg aggaggaaac ctctaccgta 840 cccctggttg aggacgtccg gaaaatcaag gacgacgaag tcagcaggga gagtgcctcc 900 aattggatca gggaggtaat caaattgaaa aattctacac tttctgctga cgagctttcc 960 ctggcgacca tcgccaggta tgtagaaaat ttaggggaaa aatataaact tgacattgca 1020 tccaagacat atctcaagca atgtgcaatg atttcggtac caatcccctc ccaaaaagac 1080 ataaaaacaa agatggtgat ccaaagccct gctgcccgcg cacttcgtga gcgcgtggca 1140 gttcttgact cccagggttt ttagaagggc tctgtaccgc ctccggtttt gaaagcccct 1200 ttaccattct tggcttaccg gagatagcgg tcacagacgg agcccgactc cgtaaggtta 1260 gtagtaatat taattacctt acccagaccc atctaggcct tgtatataaa gcacccaatg 1320 catccctgca caacgcgctc gtagccatcg aaaggagagt gtttacagta ggaaaggggg 1380 attctgctat ctaccccccc cacccggaat atgacatttt ctcagagaca atgggctact 1440 ttgctgagtc cattgtcaac aaggtgggat actgcaaaac atacacccct cagcaactgg 1500 ctcttagtta cagtgcaggg aagagggccc agtatttcaa agccattgag tccttgaaga 1560 aggaaccata tcaattgaag gactcaaacg tgcaggcatt cctcaagaag gagaaacact 1620 ggatgaccaa agccatcgcc ccgcgcctca tttgcccccg ctctaagcgg tacaatatca 1680 tcctaggaac tcgtttaaaa ttcaacgaga agaagatcat gcatgccatt gacggtatgt 1740 ttggatcccc cactgtgctt tcaggttatg atagctttac ccaaggcaga atcatagcca 1800 gtaagtggca aaagtttgca tcacccgttg ctattggtgt tgatgctagt cgctttgacc 1860 aacacgtgtc tcagcaggcg cttaagtggg aacacgggat atacaatggc attttcggcg 1920 acactgaatt ggcccttgct ctcgaacatc agcttgtaaa taatatcaaa atgttcgttg 1980 aggacaaaat gctaactttt aaagttaggg gccacagaat gtcaggggac atcaatacca 2040 gcatgggaaa caagctcatc atgtgtggca tgatgcacgc ttactttaag aagctgggtg 2100 ttgaagcaga gctttgtaac aatggagatg attgtgtcat cataactgaa agggctaatg 2160 aacacctttt cggtggaatg tatggccatt tccttaaata cggcttcaac atggtgacgg 2220 aaaccccggt ttatgaactc ggggagcttg aattttgcca atctagaccc gtcagaattg 2280 gtggcaatta cagaatgatc cgtcggcccg actgcatagg aaaagatagc aacacacttt 2340 tgagcatgcg caatgaatcc gacgtgaaaa gctatatgtc ggctgtggct cagtgtggtc 2400 tcgttttgaa tgcgggtgta cccatacttg aaagcttcta ccgctgtctg tacagaagct 2460 cggggtacaa gaaagtaagt gaggaatata tcaaaaacgt catatcatat ggaacagatg 2520 aacgccttca aggtagacgt accttcgagg agacacctat caccactgac aatcgtatgt 2580 catactggga atcatttgga gttgacccta agatacaaca acttgtcgag aggtactacg 2640 acaatcttac ggtaagtgcc caactccaga gtgtgaaggt gacatctcca catctgcaat 2700 caatcctcct ctccattccg gagaacaact cgcacaacga atattaatta ccaaatctta 2760 gccgggtttg ggatagggtt tattctaagt attccctgta cattagctct cacgtacttt 2820 atttacaata aagtttcaga caccactaga gaggtggtga atgaattcag taggccgtag 2880 aggacctaga agagcaaata atggcacacg aaggcggcgc cgtcgagcaa ttcggccagt 2940 ggttgtggtc cggcccaatc gaacaggacc cagacgacga aatgctcgac gcgcaagagg 3000 aagaaggcca ggttctgtat ttggaccaaa acgcggggct gaggtattcg tattctcagt 3060 cgacaacctt aaggccaact cctccgggat cctcaaattc ggtcccgatt tatcgcaatg 3120 cccagcggtt tcagacggag tacttaagtc ctaccacaat tacaagatct caagtatcaa 3180 cgttgagttt agaacacacg cgtccgccac tacgtcgggc gctatgttta ttgaactcga 3240 cacctcgtgc aagcaatcag ccttatctag ctacattaac tcattcacca tcagcaaatc 3300 cgcctcaaag tccttccgcg cagcggagat tggagggacc cagttccagg cgacatcggt 3360 gaatcaattc tttcttttat acaaggcaaa tggcactacg actgacattg cagggcagtt 3420 catcatcagg attgagcttc acctgatgac tgccaaatag gtagactcct caacaccgga 3480 accaaagccc acaccagccc caacacctgc ccctgcccct gagcctaaac cagagcctac 3540 acctgcacct ccccccaagc gtttctttga gtatgttgga actccagttg gggtcatatc 3600 tactcgagaa aacactgaca gtatatcagt gtctaagctc ggtggccagt cgatgcagta 3660 tatcgagaac gagaagtgtg agaccaaaac tattgactcc ttctggagca caaacaacaa 3720 cgtttcggca caagctgcct tcgtttttcc agtgccagag gggtcgtaca gcgtaaacat 3780 ctcgtgtgaa ggtttacaat ccgttgacca cattggtggc aatgaggatg gctattggat 3840 tgggctcatt gcctattcca attcgtcggg tgacaactgg ggtgtaggta actataaagg 3900 gtgtgtgttt acaaatttcc tggcaacgaa tacctggcga ccaggacaca aagatttaaa 3960 acttaacgat tgccagttca cagacggaca aatagttgaa agggatgcag ttatgtcctt 4020 ccatgtagag gcttcaggca aagatgcctg tttctacttg atggctccca aaacaatgaa 4080 aacagataag tacaactatg ttgtctcgta cggagggtat acaaacaaaa gaatggagtt 4140 tggtaccatc tctgttacat gtgatgaatc cgatgttgag gcattccgca tgacccggca 4200 ctctgagtgc cctacccgcg tgaataatat tttaattgat gagggatact gtcagcctct 4260 ttccaccata accgaccaag ggctgtgtga tgtgcaaact cccggccaag accaagaggt 4320 ggtcgaggaa gatagacaaa ctgtttccac tgaatctgat atagcgctca aggaatatga 4380 agcagctatc gctgaaatcc ctgacgctga agaggatgct ttgccctctc gggaacaact 4440 ctcatctaaa ccagttgaca cgtcagggga ggagatcccc aaacccagac ccttgagcaa 4500 tgaggttctg ggtgtttacc aaggtcagac catctatgct gatgacgtgc cacctggtac 4560 aaggcaaaag ctacgtgatg ccgccaaagc accttctacc ctgttgtatg acaagacccc 4620 aaaacggtct aaatctattt tgtccaggtt tttagaaggg aataggtcct ctgtagaatc 4680 tgctgctccc tctacagcta ctacatccaa tttaaccagg gagcagctcc gggaatacac 4740 ccgcattagg aatactttag gtttaacagc tgcaaaggag tacaaggctc gtctttcgtg 4800 aagacaacac cactcgcaca aattggatcc tgggaaacag gcagaacttc ggttcgtgag 4860 ctcgggtgac tggaaggtgg gctgtcaacc caccaccgac tcaccgccgt atcgtactgt 4920 gtgtggccga tggatgatct tcgcattatc gccctctgtg ctctgtcatc aactatactg 4980 tttaccattg cgttggtgag tagttggtgt gcaagctgtt gtaagttcat agatgcagct 5040 tgttctgtgt aagctgtaac caaaaatatc ggggagcttc tgctcagtga gaggattaac 5100 gaccctcggt aatggctggt cttggcaggc ctgaataacc tgctatagga caactggaaa 5160 cccaccagtg atcaaataag gtagcttact tctgagctgt acactgtccc tgcgcaatcg 5220 gggtaaacaa ctataaccac ccaactcgat gaaatgagag tggaggtggc ggagtgggtg 5280 acttcgtgat gtacacccga gcgtcaggtt tgaagacgcc ataaaacaca acgagatgag 5340 aacctcgtta taaaagttcc tcggctgata cacccagtcg actggacctg ccggcatacc 5400 cttgatacga aacaagggct tctgagagcc actacctgtg atgcaaggta gggtaagagt 5460 cttagcaacc tctgtacttg gaagtggaca taaaccatag caatccagca gcatcccaga 5520 agagagttta cctcactagg tgaaaacgtg ccacgggcct gtttcaagca atctagctct 5580 gcttgagaca gtatctcata gaagcaattc tatgggggga ctggattctg actgccgaca 5640 ctcgcaagag aagttcggca tccc 5664 //