ID EU332311; SV 1; linear; genomic RNA; STD; VRL; 5652 BP. XX AC EU332311; XX DT 22-JAN-2008 (Rel. 94, Created) DT 07-JUL-2011 (Rel. 109, Last updated, Version 2) XX DE Barley yellow dwarf virus-PAV isolate 05GG6 RNA-dependent RNA polymerase, DE P1, aphid transmission protein, coat protein, movement protein, and P6 DE genes, complete cds. XX KW . XX OS Barley yellow dwarf virus PAV OC Viruses; Riboviria; Luteoviridae; Luteovirus. XX RN [1] RC Publication Status: Online-Only RP 1-5652 RX DOI; 10.1371/journal.pone.0016896. RX PUBMED; 21326861. RA Wu B., Blanchard-Letort A., Liu Y., Zhou G., Wang X., Elena S.F.; RT "Dynamics of molecular evolution and phylogeography of Barley yellow dwarf RT virus-PAV"; RL PLoS One 6(2):E16896-E16896(2011). XX RN [2] RP 1-5652 RA Liu S., Wang X., Liu Y., Zhou G.; RT "Population genetic diversity of BYDV-PAV from China"; RL Unpublished. XX RN [3] RP 1-5652 RA Liu S., Wang X., Liu Y., Zhou G.; RT ; RL Submitted (07-DEC-2007) to the INSDC. RL Plant Pathology, Institute of Plant Protection, Chinese Acadamy of RL Agricultural Sciences, West Yuanmingyuan Road No.2, Beijing 100094, China XX DR MD5; bae9240fd00cf2daf8aca751280e5aff. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF00434; BTE. DR RFAM; RF01508; BYDV_5_UTR. XX FH Key Location/Qualifiers FH FT source 1..5652 FT /organism="Barley yellow dwarf virus PAV" FT /host="wheat" FT /isolate="05GG6" FT /serotype="PAV" FT /mol_type="genomic RNA" FT /country="China:Gangu" FT /db_xref="taxon:2169986" FT CDS join(140..1156,1156..2742) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="RdRp; P1-P2 fusion created by -1 ribosomal FT frameshift" FT /db_xref="GOA:B0FKM4" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:B0FKM4" FT /protein_id="ABY73565.1" FT /translation="MFFEILIGASAKAVKDFTSHCYSRLKSIYFSFKRWLMEISGQFKA FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKTGVTEAWTDF FT FTKSRGGVYAPLSCEPTRQELEVKSEKLEKLLEEQHQFEVRAAKKYIKEKGRGFINCWN FT DLRSRLRRVKDVKDEAKDNARAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLMREVVKE FT KNGEEEKHLEPIMEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATIARYVE FT NVGDKFKLDIASKAYLKQVASMSVPIPTNKDIKLKMVLQSPEARARRERMDVLDSVGFL FT EGLCTASGFESPFPILGLPEIAVTDGARLRKVSSNIRYLSQTHLGLVYKAPNASLHNAL FT VAVERRVFTVGKGDSAIYPPHPEYDIFSETMGYFAESIVNKVGYCKTYTPQQLALSYSA FT GKRAQYFKAIESLKKEPYQMKDANVQAFLKKEKHWMTKAIAPRLICPRSKRYNIILGTR FT LKFNEKKIMHAIDGMFGSPTVLSGYDSFTQGRIIASKWQKFASPVAIGVDASRFDQHVS FT EQALKWEHGIYNGIFGDNELALALEHQLVNNIKMFVEDKMLTFKVRGHRMSGDINTSMG FT NKLIMCGMMHAYFKKLGVEAELCNNGDDCVIITERADEHLFGGMYDHFLKYGFNMVTET FT PVYELGELEFCQSKPVRIGGNYRMVRRPDCIGKDSNTLLSMRNQSDVKSYMSAVAQCGL FT VLNAGVPILESFYRCLYRSSGYKKVSEEYIKNVISYGTDERLQGRRTFEETPITTDNRM FT SYWESFGVDPKIQQLVERYYDNLKVSAQLQSVKVTTPHLQSILLSIPENNSHNEY" FT CDS 140..1159 FT /codon_start=1 FT /product="P1" FT /note="ORF1" FT /db_xref="GOA:B0FKM5" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:B0FKM5" FT /protein_id="ABY73566.1" FT /translation="MFFEILIGASAKAVKDFTSHCYSRLKSIYFSFKRWLMEISGQFKA FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKTGVTEAWTDF FT FTKSRGGVYAPLSCEPTRQELEVKSEKLEKLLEEQHQFEVRAAKKYIKEKGRGFINCWN FT DLRSRLRRVKDVKDEAKDNARAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLMREVVKE FT KNGEEEKHLEPIMEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATIARYVE FT NVGDKFKLDIASKAYLKQVASMSVPIPTNKDIKLKMVLQSPEARARRERMDVLDSVGF" FT CDS 2856..4790 FT /codon_start=1 FT /transl_except=(pos:3453..3455,aa:OTHER) FT /product="aphid transmission protein" FT /note="P3-P5 fusion created by ribosomal read-through of FT the ORF3 stop codon" FT /db_xref="GOA:B0FKM6" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:B0FKM6" FT /protein_id="ABY73570.1" FT /translation="MNSVGRRGPRRANNGTRRRRRRAVRPVVVVQSNRTGPRRRNARRA FT RGRRPNSVFGPKRGAEVFVFSVDNLKANSSGILKFGPDLSQCPAVSDGVLKSYHNCKIS FT SINVEFRTHASATTSGAMFIELDTSCKQSALSSYINSFTISKSASKSFRAAEIGGTQFQ FT ATSVNQFFLLYKANGTTTDIAGQFIIKIELHLMTAKXVDSSTPEPKPTPAPTPPPQPEP FT KPEPTPAPPPKRFFEYVGTPTGVISTRENTDSISVSKLGGQLMQYIENEKCETKTIDSF FT WSTNNNVSAQAAFVFPVPEGSYSVNISCEGLQSVDHIGGNEDGYWIGLIAYSNSSGDNW FT GVGNYKGCVFTNFLATNTWRPGHKDLKLNDCQFTDGQIVERDAVMSFHVQASGKDACFY FT IMAPKTMKTDKYNYVVSYGGYANKRMEFGTISVTCDESDVEALRMSRHSESPTRVNNIL FT IDEGYHQTLSPIQNLGLCDVQTPGQDEVEEDDKQTVSTEPDIALLEYEAATAEIPDAEE FT DVLPSKEQLSSKPVDTSGEEIPKPPPRDNEILGVYQGQPIYADDVPPIARQKLRDAAKA FT PSTMLYDKAPKSKSFLSRFVEGNRSKVENTAPSTATTSNLTREQLREYTRIRNSLGLTA FT AREYKAQFS" FT CDS 2856..3455 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3; P3" FT /db_xref="GOA:B0FKM7" FT /db_xref="InterPro:IPR001517" FT /db_xref="UniProtKB/TrEMBL:B0FKM7" FT /protein_id="ABY73567.1" FT /translation="MNSVGRRGPRRANNGTRRRRRRAVRPVVVVQSNRTGPRRRNARRA FT RGRRPNSVFGPKRGAEVFVFSVDNLKANSSGILKFGPDLSQCPAVSDGVLKSYHNCKIS FT SINVEFRTHASATTSGAMFIELDTSCKQSALSSYINSFTISKSASKSFRAAEIGGTQFQ FT ATSVNQFFLLYKANGTTTDIAGQFIIKIELHLMTAK" FT CDS 2896..3357 FT /codon_start=1 FT /product="movement protein" FT /note="P4; ORF4 translated via a leaky scanning mechanism" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:B0FKM8" FT /protein_id="ABY73568.1" FT /translation="MAQEGGAVEQFGQWLWSNPIEQDPDDEMLDAQEEEGQILYLDQNA FT GLRYSYSQSTTLRPTPPGSSNSVPIYRNAQRFQTEYLSPTTIARSQVSTLSLGHTRPPL FT RRALCLLNSTPRASNQPYLATLTHSPSANQPQSPSAQRRLEGPSSRRHR" FT CDS 4920..5042 FT /codon_start=1 FT /product="P6" FT /note="ORF6; highly variable sequence" FT /db_xref="InterPro:IPR009426" FT /db_xref="UniProtKB/TrEMBL:B0FKM9" FT /protein_id="ABY73569.1" FT /translation="MDDLHVIALCVLSSTILAGTALAIGCCVGCCRLIDAAYSV" XX SQ Sequence 5652 BP; 1626 A; 1354 C; 1378 G; 1294 T; 0 other; tgaagattga ccatctcaca aaagctgtta cgtgcttgta acacactaca cacccgtttt 60 gtgttcggga agtagttgcg aaaacggtcc ccttattgtc tgacaagcta agggccaccc 120 ttcttacccc accgccatca tgtttttcga aatactaata ggagctagcg ctaaggcggt 180 caaggacttt actagccatt gttactctag actgaaatct atatattttt catttaaacg 240 atggctaatg gagatatctg ggcaatttaa ggcccatgac gcctttgtca acatgtgctt 300 tgggcatatg gcagacattg aggactttga ggcggaactc gctgaggagt tcgccgagag 360 ggaagatgag gtggaagagg cgaggagcct cttgaaactg ctggtcgccc aaaaatctaa 420 aactggggtg accgaggctt ggaccgactt ctttacgaag tcgagaggtg gcgtttatgc 480 gccactttcc tgcgagccta ccaggcagga gctagaagtt aagagcgaga agctcgaaaa 540 acttctagaa gaacagcacc aattcgaggt gcgagcggcc aagaaataca tcaaggaaaa 600 gggccgcggc ttcatcaact gctggaacga cttgcgaagt cgtctcaggc gggtgaagga 660 cgtcaaggac gaggcgaagg acaatgctag agctgctgcc aagattggag cagaaatgtt 720 cgcccccgtt gacgtgcagg acctctacag ctttacagag gtcaagaagg tggagaccgg 780 cctcatgagg gaggtcgtaa aggagaaaaa cggcgaagaa gagaaacacc tcgagcccat 840 catggaagag gtgaggtcta tcaaggacac cgccgaagcc agggacgccg cctccacctg 900 gataacagag acagttaagc tgaagaactc aacgcttaac gcagatgaac tgtctcttgc 960 caccatcgcc cgctatgttg aaaacgtagg ggacaaattc aaactcgaca ttgcaagcaa 1020 agcataccta aagcaagtcg catcgatgtc tgtaccaatc ccaaccaaca aagacatcaa 1080 attgaagatg gtgctgcaga gtcctgaagc acgtgccagg cgggagcgca tggacgtgct 1140 tgactctgtg ggtttttaga ggggctctgt accgcctctg gttttgagag cccatttccc 1200 attctcgggc tgccagagat cgcggtcaca gacggagccc ggctccgtaa ggttagtagt 1260 aatattagat accttagcca aacccatcta ggtcttgtat acaaggcacc aaatgcctcc 1320 ctgcacaacg cgcttgtagc agtggagaga agagttttta cagtaggaaa gggggattct 1380 gctatctacc ccccccaccc tgaatatgac attttctcag aaacaatggg ctactttgct 1440 gagtccattg tcaacaaggt gggatactgt aaaacataca cccctcagca actggctctt 1500 agttacagtg cagggaagag ggcccagtat ttcaaagcca ttgagtcctt gaagaaggaa 1560 ccataccaaa tgaaggacgc aaatgtgcag gcattcctca agaaggagaa acactggatg 1620 accaaagcca tcgcccctcg cctgatttgc ccccgctcca agcggtacaa tatcatccta 1680 ggaactcgtt tgaaattcaa cgagaagaag atcatgcatg ccattgacgg tatgtttgga 1740 tcccccactg tgctttcagg ctatgatagc tttacccaag gcagaatcat agccagtaag 1800 tggcaaaagt ttgcatcacc cgttgctatc ggtgttgatg ctagccgctt tgaccaacat 1860 gtgtctgagc aggcgcttaa gtgggaacac gggatataca atggcatttt tggcgacaat 1920 gaattggccc ttgctctcga acatcagctt gtaaataata ttaagatgtt cgttgaggat 1980 aagatgctaa ccttcaaagt tagaggccat agaatgtcag gggacattaa caccagcatg 2040 ggaaacaagc tcatcatgtg tggcatgatg catgcttact ttaagaagct gggtgttgaa 2100 gcggaacttt gtaacaatgg agatgattgt gtcatcataa ctgaaagggc tgatgaacac 2160 cttttcggtg gaatgtatga ccatttcctt aaatacggct tcaacatggt gacggaaacc 2220 ccggtttacg aactcgggga acttgaattt tgccaatcta aacccgtcag aattggtggc 2280 aattatagaa tggtccgtag gcccgactgc ataggaaaag atagcaacac acttttgagc 2340 atgcgaaatc aatccgacgt caaaagctat atgtcggctg tggctcagtg tggtcttgtt 2400 ttgaatgcgg gtgtacccat actcgaaagc ttctaccgct gtctgtacag aagctcgggg 2460 tacaagaaag taagtgagga atatatcaaa aacgtcatat catatggaac agatgaacgc 2520 cttcaaggta gacgtacctt tgaggagaca cctatcacca ctgacaatcg catgtcgtat 2580 tgggaatcat ttggagttga ccctaagatt caacaacttg tcgagaggta ctacgacaat 2640 cttaaggtaa gtgcccaact ccagagtgtg aaggtgacaa ctccacatct gcaatcaatc 2700 ctcctctcca taccggagaa caactcgcac aacgaatatt aattaccaaa tcttagccgg 2760 gttcgggata gggttcatag taagtatacc ctgtacatta gctctcacgt actttgttta 2820 caataaagtt tcagacacca ctagagaggt ggtgaatgaa ttcagtaggc cgtagaggac 2880 ctagaagagc aaacaatggc acaagaaggc ggcgccgtag agcagttcgg ccagtggttg 2940 tggtccaatc caatcgaaca ggacccagac gacgaaatgc tagacgcgca agaggaagaa 3000 ggccaaattc tgtatttgga ccaaaacgcg gggctgaggt attcgtattc tcagtcgaca 3060 accttaaggc caactcctcc gggatcctca aattcggtcc cgatctatcg caatgcccag 3120 cggtttcaga cggagtactt aagtcctacc acaattgcaa gatctcaagt atcaacgttg 3180 agtttaggac acacgcgtcc gccactacgt cgggcgctat gtttattgaa ctcgacacct 3240 cgtgcaagca atcagcctta tctagctaca ttaactcatt caccatcagc aaatcagcct 3300 caaagtcctt ccgcgcagcg gagattggag ggacccagtt ccaggcgaca tcggtgaatc 3360 agttctttct tttgtacaag gcaaatggca cgacgactga tattgcgggg cagttcatca 3420 ttaaaattga gcttcactta atgactgcca aataggtaga ctcctcaaca ccggaaccta 3480 aacccacacc agctccaaca cccccccctc aacctgagcc caaaccagag cccacacctg 3540 cacctccccc aaaacgcttc tttgagtatg ttggcacccc gaccggagta atatcaactc 3600 gggaaaacac tgatagcata tcagtgtcga agcttggggg tcagttaatg cagtacatag 3660 agaacgagaa gtgtgagaca aaaaccatcg actctttctg gagcacaaat aacaacgttt 3720 cggcgcaagc cgccttcgtt tttccagtgc cagaaggatc gtacagtgtg aacatctcgt 3780 gtgaaggtct tcaatccgtt gaccacattg gtggcaacga ggatggctat tggattgggc 3840 ttattgccta ctctaattca tcaggtgaca attggggcgt gggcaactac aaagggtgtg 3900 tgtttacaaa tttcttggca acgaatacct ggcgaccagg tcacaaggat ttaaaactta 3960 acgattgcca atttacagac ggacaaatag ttgaaaggga tgcagtcatg tctttccacg 4020 tgcaagcatc aggcaaggac gcctgtttct acataatggc tcccaaaaca atgaaaactg 4080 acaaatacaa ctatgttgtc tcgtatggag ggtacgcgaa caaaaggatg gagttcggta 4140 ctatctccgt tacctgtgat gaatccgatg ttgaggcact ccgtatgtcc aggcactccg 4200 agagtcccac ccgcgtaaat aacattttaa tagatgaagg ataccatcaa actttatccc 4260 ccatacaaaa tttaggactg tgtgatgtgc aaactcccgg tcaagatgag gtagaggaag 4320 atgataaaca aactgtttct actgaacctg atatagcgct gctggaatac gaggccgcaa 4380 cagctgagat tccagacgct gaagaggatg ttttaccctc taaggaacag ctttcatcta 4440 aacctgtgga cacatccggc gaggaaattc caaaacctcc cccgagggac aatgaaatcc 4500 ttggagtcta ccaaggacaa cctatatacg ctgatgatgt gccacccatt gccaggcaga 4560 aacttcgaga cgccgccaaa gcaccctcca ccatgctata cgacaaggca ccaaaatcca 4620 agtcgttttt atcccgtttt gtggaaggga acaggtccaa ggtagaaaac actgctccat 4680 caaccgcaac gacatctaat ttgaccaggg agcagcttcg tgaatatact agaattagaa 4740 atagcttagg ccttaccgcc gcaagggagt acaaggcaca attttcgtga agacaaacac 4800 cactcgcgca aatcggatcc tgggaaacag gctgaactta tgttcgtaag ctcgggtgat 4860 tggagggtgg gctgtcaacc caccaccaac tcaccgccgt atcgtattgc gtgtggccga 4920 tggatgatct tcacgttatt gccctctgtg tcctctcctc aaccatcctg gctggtacag 4980 cgctagcgat tggttgttgc gtcggttgtt gcaggttaat agacgcggct tattctgtgt 5040 aagttgcgac caaaaatatc gaggaagctt cggcttagtg agaggattaa cgaccctcag 5100 caatggctgg tcttggcaag cctgaataac ttgttataag acaactggaa acccaccagt 5160 gatcaaataa ggtagcttgc ttctgagcta tacactgccc ccgcgcaatc ggggtaaaca 5220 actataaccg cccaactcga tgaaacgaga gtggaggtgg cggagtgggt gacttcgtga 5280 tgtgcacccg aacgtcaggt ttgaagacgt tataaaacac aacgagatgg gaacctcgtt 5340 agaagttcct cggctgatac acccagtcga ccggacctgt tggcataccc ttgatacgaa 5400 acaagggctt ctgagagcca ctacctgtga tgcaaggtag ggtaagagtc ttagcaacct 5460 ctgtactcag aagtggacat aaaccatagc aatccaacag catcccggaa gagagttttc 5520 ctcactaggt gaagcgtgcc acgggcctgt ctcaagcaat ctagctctgc ttgacacagt 5580 atctcataga agcaattcta tggggggact ggattctgac tgccgacact cgcaagagaa 5640 gttcggcatc cc 5652 //