ID EU223295; SV 1; linear; genomic RNA; STD; VRL; 7474 BP. XX AC EU223295; XX DT 27-APR-2008 (Rel. 95, Created) DT 27-APR-2008 (Rel. 95, Last updated, Version 1) XX DE Apple chlorotic leaf spot virus isolate Ta Tao 5, complete genome. XX KW . XX OS Apple chlorotic leaf spot virus OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Trivirinae; Trichovirus. XX RN [1] RP 1-7474 RX DOI; 10.1007/s00705-008-0076-z. RX PUBMED; 18392552. RA Marini D.B., Gibson P.G., Scott S.W.; RT "The complete nucleotide sequence of an isolate of apple chlorotic leaf RT spot virus from peach (Prunus persica (L.) Batch)"; RL Arch. Virol. 153(5):1003-1005(2008). XX RN [2] RP 1-7474 RA Marini D.B., Scott S.W.; RT ; RL Submitted (16-OCT-2007) to the INSDC. RL Entomology, Soils and Plant Sciences, Clemson University, 120 Long Hall, RL Clemson, South Carolina 29634-0315, USA XX DR MD5; df85cab6b77bbaebf46ce735b132ce5e. DR EuropePMC; PMC4982687; 27519059. XX FH Key Location/Qualifiers FH FT source 1..7474 FT /organism="Apple chlorotic leaf spot virus" FT /isolate="Ta Tao 5" FT /mol_type="genomic RNA" FT /country="USA" FT /db_xref="taxon:12175" FT CDS 160..5802 FT /codon_start=1 FT /product="polymerase" FT /note="ORF1" FT /db_xref="GOA:B2KTG4" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR005123" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008744" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR037151" FT /db_xref="UniProtKB/TrEMBL:B2KTG4" FT /protein_id="ABY71563.1" FT /translation="MAFSYRTPQEELLNRLPQSQQEILGKFQFERIEKEEEKKVANFSY FT FLPEKTREWFTKSGVYLSPFAYETHSHPGCKTLENHLLFNVVASYISKYPYVACLSIKS FT NKMSKMERLGASSVKTYDILNRLVTAKDKARYGPLVSEVRAPCPKKTNIFIHDEIHYWS FT RKQLENFLMINKPKNLWATLVFPPEILAGYRSSVLPFLYQFEISGKDLIYMPDGVRSES FT YTQPLENGYLLSSNSIIIFDHCKKKEIRYQISLIYSLGSHHLFHIFPCQDLMKEEVRRF FT GPYDLFDVGSLFVRPVRVPIQDFPLSVFKKIFIYLSSLKKPDEQSAVAKLRQLSDADIS FT IESVFLVQEFASRIEKHGLGNWSCSFWDCMKDWFFDKLPYNHVLEKIGLADDFTRRLMK FT LKPLSFDIHTSDQPLTVRMVIDRIWGPDQIEDDPLVECISKDRIGVIHNNCIVRGIQGV FT KTILKLDSSKVHVYNYEIYSDILATTPLRKSYDENFGCIRTRTMVKFLSKHSLSEAAEV FT KTNARSLGWLNGNETINKTDFQVSKEMERRRISRECMQYHFKKTGAKDQDELISKLIIL FT ESTKKQIRGVTKEKAKRRRMVPAYIDEVRCLKTEQDSANNGLDSTFVKQDLSIKGREEE FT KEKSEGPWSNTHQGKGTPDKVEAILSCPLNCIKMCESGLIKRVGGSFEALKNYIGDLPL FT EQIKGRRAAYFCLDYPMIYFHDKISYKTFEATGELKRVMIKARSDWGINFNSALVQIYE FT AGTKLPLHKDDEECYDDDGVLTINVVGEASFSTTCHDEITLLKEGNELLMPSGYQKKFR FT HAVKVLSEGRISVTLRVHKRDFNFESKVKFIKGRYDCLFECIAEIIHKKPEEVMSLLPH FT VLDRCVSNKGCSIDDLKAICDKYEIKIECEGDCGLVECGSQGLSIGRMNLRGNHFRVAS FT IRRSSIVSLANSKKEIKSTGSLDHVMINFKKRLLQVETDITKASIKVDLIRAGKLLKSL FT MDGMTGIVSHNSTHEGWRIINGINSTAEMRAFMKMIKKDDDKESNFLSDRVGELEFERK FT EISGIFGFAGSGKSHAIQNLIYNEFKGSQGIMVICPRRFLAKDWSEKGVDEKDIKTFES FT ALKSDIKGKRLFILDEVTLLPRGFVDLLLLKMHMEGVFRNSTVVCLGDPLQAGYFSQRD FT DSYLARDNEIKRLFPNGVNYKWYSYRINKFIGKKINVPSLNEFIGIDEQSAIYKDMPSA FT FHFLDKGGNHPEVILVASMIEKELYSNYGMVMTFGESQGLTFGNGIIVLSEEAKLCSDA FT HIMVAITRFRRGFCFALGSKGSKEDYMKSMKSGLLQRMCSGLGASQEFILNTSPVKLHL FT SKKAIESGAGIDEMDREERLQGDVWLKSMIYLGKRFHLVEPLGQVVSLVDSAIKCHIPV FT CSEQTLGPELEKVWAREHREFKGKNGWSCQFREEAGPKWMVPYKINQAMSHEAIYPRHR FT MDDDLTFLAAIKKRLRFDSVANNMAKFKAAESRGKYLAKIFLKHVPIKSGRDQRLLDAC FT RQEFEETKLSKSAATIGAHSQRSDTDWPLDKIFLFMKSQLCTKFEKRFTEAKAGQTLAC FT FPHRILVEFSPWCRYTEKILSANLPDNFYIHQRKNFSELETFAKRYSNGSVCVESDYTA FT FDVSQDHTILAFEVELLRHFGWDEKILQSYIKMKCTLGCRLGGFAIMRFTGEFSTFLFN FT TLANMVFTFCRYRVPDGTPICFAGDDMCALRNLKETEDHELILNKLSLKAKVNRTKVPM FT FCGWRLCSDGLIKEPCLIYERLQVAIENNRLMDVIDSYFLEFSFAYKLGERLYSHLEIE FT QLNYHQVLTRFFVKNKHLLRGDSRNSISELEWLSDEDGDDGQGSQIKDRRRGYTNCWGE FT KLQNLF" FT CDS 5714..7054 FT /codon_start=1 FT /product="movement protein" FT /note="ORF2" FT /db_xref="GOA:B2KTG5" FT /db_xref="InterPro:IPR001815" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:B2KTG5" FT /protein_id="ABY71564.1" FT /translation="MAMMVRGHKSKIAEGDIPIAGVRSSRIYSDITPFKRASDLMIHWN FT EFVFKVMPEDIVGKGFRLASVPVVPISEIQSVLRKREGTNYVHWGALSISIDALFKKNA FT GVTGQCYVFDKRWTTFDQALLQKFEFNLDRGSATLITSPNSSVSLDDPGLMDSICVAVM FT FENLNFKLENYPISVRVGNMCRFFDSFLSSVRNKDESNARIEAANAEPLGLADFGFEGG FT DRISELFDYVQSVPVMAVQTKEMEIPKGLFGLMGKRTVKSFEFTSKAGNARRREWSKLK FT ISGDVAGVKLPAFGGEFERSDSIGRRKKKLETPEKPGSITSEGSLVSDISAREFQFARQ FT DQEGKNGSHFEPAAEGGQGVEGFPGGGQSSLAWKDRGNSGTDTGVHLRKHRSSRNLGAN FT GIPRRGSRGEEEWGSHSAAEVQSEDGRGADQAFSDHIFGQKHQYPYL" FT CDS 6750..7331 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3" FT /db_xref="GOA:B2KTG6" FT /db_xref="InterPro:IPR008879" FT /db_xref="UniProtKB/TrEMBL:B2KTG6" FT /protein_id="ABY71565.1" FT /translation="MAATLNLQLKVDRELRAFLAEANRPLHGKTGGTVELILESIFANI FT AVQGTSEQTEFLDVEVEVKKSGDPTVLQKYNLRTVVELIKLFRTTSSDKNINTLTFRQI FT CEAFAPEARDGLVKLKTIGVFTNLYKTMPEVGNKYPELMFDFNKGLNPMLMNKTQRVVV FT TNLNRRLLQTEFAKSENEAKIASVSNDLCI" XX SQ Sequence 7474 BP; 2332 A; 1337 C; 1791 G; 2014 T; 0 other; acgcggggat actgaacaag tatacactca agacgtgagt gaacagattg acgtaacgcc 60 tcaatcgtgg tcaaggatct tcatcatttg atgaaataaa ttaaagaaaa aaaaaaaaaa 120 caaggagagt aaggcaagaa cttcatttgc ctagtgacta tggctttctc atacagaacg 180 ccacaggagg agctcttgaa cagattgccc caatcccaac aggagatact gggcaaattc 240 cagtttgaga gaattgaaaa ggaggaggaa aagaaggtgg ccaacttttc ctactttttg 300 ccagagaaaa cacgtgaatg gttcaccaaa tctggtgtgt acctttcacc ttttgcctat 360 gagactcatt ctcatccagg ctgcaagact ctggagaacc accttttatt taatgtagta 420 gctagttata ttagtaaata tccttatgta gcatgtttga gcatcaagtc caacaaaatg 480 agcaaaatgg aacgtcttgg tgcatcatca gttaaaacct atgacattct gaataggtta 540 gtcacagcta aggacaaagc caggtatggt cctcttgtct cagaggttag agcaccttgc 600 ccaaaaaaaa caaatatctt catacatgat gagattcatt actggagcag gaagcagttg 660 gaaaacttcc tgatgattaa taagccaaag aatctctggg ctactctggt gtttccgccc 720 gagatactag caggatatcg atcctcagtg ttgcctttcc tttaccaatt tgagatttca 780 ggtaaagatc tgatttacat gcctgatggt gttagatcag aaagttacac ccaacctcta 840 gagaatgggt atttactttc ttcaaacagc ataattattt ttgatcactg caaaaaaaaa 900 gagatcaggt accaaataag tttaatatac tcattaggtt cacaccacct cttccacatt 960 tttccgtgtc aagatttaat gaaggaggag gttcgccggt ttgggcctta tgatttgttt 1020 gatgttggat ctttatttgt gagaccagtt agagtgccca tacaagattt tccgcttagt 1080 gtgttcaaga aaattttcat ttacttaagc tcccttaaga aaccagatga gcaatcagct 1140 gtggcaaaat tgaggcaact ctctgatgcg gatatctcta tcgaatcagt gtttctagtt 1200 caggaattcg ccagtagaat agagaagcat ggccttggta actggagttg ctctttttgg 1260 gattgcatga aagattggtt ttttgacaaa ttgccatata accacgttct tgagaaaatc 1320 ggactggcag atgattttac tagaagactc atgaaactta aacctctttc atttgatatt 1380 cacacctctg accagcctct caccgtcaga atggtcatag ataggatctg gggacctgat 1440 cagattgaag atgacccctt ggtggaatgc atttcaaaag acagaatcgg agttatccac 1500 aacaattgca tcgtcagagg gattcagggt gtcaagacta ttctaaaatt ggacagtagc 1560 aaggtccatg tctacaatta tgaaatctat tcagatattc ttgccacaac tccgttgcgc 1620 aaatcttatg acgagaattt tggatgcatc agaacaagga ctatggtgaa atttctctcg 1680 aagcactctt tgagtgaagc tgctgaggtg aaaaccaatg ctagatcgct gggttggttg 1740 aatggtaatg aaacaattaa caagactgat ttccaggtta gcaaggagat ggaaaggaga 1800 aggatttctc gggaatgtat gcaataccat ttcaagaaaa ctggagcaaa agatcaggat 1860 gagctcattt ccaagctcat tatattggaa tcaacaaaga agcagatcag aggtgtcaca 1920 aaggagaaag ccaagagaag aaggatggtg cctgcttaca tagatgaagt taggtgcctg 1980 aaaacagaac aggatagtgc taacaatgga ttggactcta catttgtcaa acaggacctt 2040 tcaattaaag gaagagaaga agagaaggaa aaatcagaag gtccatggtc taacactcat 2100 caaggaaagg gcacccctga caaagtagaa gccatcttga gttgtcctct caattgcatt 2160 aaaatgtgtg aatcaggttt aatcaaaaga gtaggcggct cctttgaggc gcttaagaac 2220 tacattggtg acctgccctt ggaacagatc aaagggagaa gggctgctta tttctgtttg 2280 gattacccaa tgatctactt tcatgacaag atttcctaca agacttttga agctacaggt 2340 gaactcaaaa gggtgatgat caaggcaaga tccgactggg gaattaactt taattcagct 2400 ctagttcaaa tttatgaagc cgggacaaaa ctgcctctcc acaaggatga cgaagagtgc 2460 tatgatgatg atggggtcct tactattaat gtggtgggtg aagctagctt ttcaaccacg 2520 tgtcatgacg agataacatt gcttaaagag gggaatgagt tactcatgcc ctctgggtac 2580 caaaagaaat tcagacatgc tgttaaggtg ctttcagaag ggcgtatcag tgtgactctc 2640 agggtgcaca aaagagattt caattttgaa tcaaaagtga aattcatcaa agggaggtat 2700 gattgccttt ttgaatgcat tgctgaaata atccacaaaa aaccagagga ggttatgtcc 2760 cttttgcctc atgtgcttga caggtgtgta agtaacaaag gctgctcgat agatgatcta 2820 aaggcaatat gtgacaaata tgagattaag attgaatgtg aaggggactg tgggttggtc 2880 gaatgtgggt ctcaaggact ctcaataggt agaatgaatc tcagaggcaa tcacttcagg 2940 gttgcatcca tcagaagatc atcaattgtt tctttggcca attcaaaaaa agagatcaag 3000 tcaacaggtt ctttggatca tgtcatgatt aacttcaaga agagacttct ccaagtggaa 3060 accgacatca caaaggccag catcaaagtt gatttgatca gagctgggaa actcctcaaa 3120 agtctaatgg atggcatgac gggaattgtg tcacataact caactcatga gggctggaga 3180 ataatcaatg gaataaatag cacagctgaa atgcgggctt ttatgaaaat gattaagaaa 3240 gatgatgata aagaaagtaa tttcctctca gacagagttg gtgaacttga atttgaaagg 3300 aaagaaatca gtgggatctt tggattcgct ggatcaggta aaagtcatgc tatccagaat 3360 ttgatctaca atgaattcaa gggatctcaa gggataatgg tcatatgccc tagaagattt 3420 cttgcaaaag actggtctga aaagggtgtc gatgagaaag atatcaaaac tttcgagagt 3480 gcattgaagt cagacattaa aggaaagagg ctcttcattt tagatgaagt gaccttatta 3540 cccaggggtt ttgtggacct acttttgctg aaaatgcaca tggaaggtgt cttcagaaat 3600 tcaacggttg tttgtcttgg agatcctttg caggctggtt acttcagtca gagggatgat 3660 agttatttgg ccagggacaa tgaaatcaaa agactttttc caaatggtgt caattacaaa 3720 tggtacagct acagaataaa caaattcatt ggaaagaaga taaatgtccc gagcctcaat 3780 gaattcattg gcattgatga gcagagtgcg atatacaagg atatgccctc tgcatttcat 3840 tttttggaca aaggaggaaa tcaccctgag gttatacttg tagcaagcat gatagagaag 3900 gaactttact ccaattatgg catggtcatg acttttgggg agtctcaagg tctcactttc 3960 gggaatggca tcatcgtcct atctgaagag gcaaaacttt gctcagatgc tcacataatg 4020 gttgcaatca ccaggttcag aagaggtttt tgcttcgccc ttggtagtaa aggttcgaaa 4080 gaggactaca tgaaatcaat gaagagtggt cttctgcaga gaatgtgctc tggattgggg 4140 gcttctcaag aatttatcct caacacctca ccagtcaagc ttcatttaag caagaaggca 4200 atagaatctg gggcgggcat tgacgaaatg gacagggagg agagactaca gggagatgtg 4260 tggctcaaaa gtatgatata cttggggaag agatttcatc tagttgaacc ccttggacaa 4320 gtagtttctc tcgttgacag tgccattaaa tgtcacattc ccgtttgttc agagcaaact 4380 ctcggtccgg aattggaaaa ggtgtgggcg agggaacaca gagaattcaa aggaaaaaat 4440 gggtggtcgt gtcagttcag agaagaggct ggaccaaagt ggatggttcc atataaaatc 4500 aatcaagcca tgagtcatga agccatttat ccaaggcaca gaatggatga tgatctgact 4560 ttcctcgctg caataaagaa gaggttgaga tttgatagtg tggctaacaa catggcaaag 4620 ttcaaagcag cagaaagtag aggtaaatat ttggcaaaga tcttcttgaa gcacgtgccg 4680 atcaaatctg gacgagatca acgactgctt gatgcatgca ggcaagaatt tgaagagaca 4740 aagttatcga agagtgctgc aacaatagga gcacattctc agagatcaga caccgattgg 4800 ccgttggaca aaattttctt attcatgaaa tctcagcttt gcaccaaatt tgaaaagaga 4860 ttcacggaag ctaaggctgg acaaactttg gcctgttttc cccacagaat cctggttgag 4920 tttagccctt ggtgtaggta cacagaaaaa attctttctg caaacttgcc agacaacttt 4980 tacattcatc agagaaagaa tttcagtgag ttggagacct ttgcgaagag atactcaaac 5040 ggatctgttt gtgttgaatc ggactacaca gcttttgatg tttcccagga tcacacaata 5100 cttgcattcg aggtcgaact gcttaggcac tttggatggg atgaaaaaat tctgcagagt 5160 tacattaaaa tgaaatgcac attggggtgc aggttaggtg gctttgccat aatgagattc 5220 acgggcgagt tctcgacttt cctgttcaac acattggcca atatggtatt caccttttgc 5280 agatacagag tgcctgatgg cacccccata tgttttgctg gtgatgacat gtgcgctctg 5340 aggaacctaa aagagactga ggatcatgaa cttattctaa acaaattgag tctcaaggca 5400 aaagtaaaca ggaccaaggt tccaatgttt tgtgggtgga gactgtgttc tgacggtttg 5460 atcaaggaac cctgtttaat atatgaaagg ttgcaagttg caattgagaa caacagactc 5520 atggatgtca ttgattccta cttccttgag ttttcatttg cctacaagtt aggtgagagg 5580 ctatactcac atcttgaaat tgagcagtta aattatcatc aagtgctgac cagatttttc 5640 gtcaagaaca aacatttgct tagaggtgat tcaagaaaca gtatttctga acttgagtgg 5700 ttgtccgacg aagatggcga tgatggtcag gggtcacaaa tcaaagatcg cagaagggga 5760 tataccaatt gctggggtga gaagctccag aatttattct gatatcacac ctttcaagag 5820 agcctccgac ctaatgattc attggaatga atttgttttc aaggtcatgc ctgaggatat 5880 agtgggcaaa gggttcagat tggcatcggt acctgtggtg ccaatttctg agattcaatc 5940 tgtgctgagg aaaagggagg gaacgaacta cgtgcattgg ggtgccctgt caatctcaat 6000 tgatgctctg ttcaagaaga atgcgggggt gacgggtcag tgttatgtgt ttgacaaaag 6060 gtggacaaca tttgatcagg cccttttgca aaaatttgag tttaatctgg acagaggttc 6120 cgctaccctg ataacctcac cgaactcctc tgtttcactt gatgatccgg gtctgatgga 6180 ctcaatatgt gtggcagtaa tgtttgagaa tttaaatttc aaattggaga attaccccat 6240 aagtgtgcga gtaggcaaca tgtgtagatt tttcgacagc tttcttagtt cagttagaaa 6300 taaagatgag tcaaatgctc ggatcgaagc tgcgaatgct gagccacttg gcctggctga 6360 ttttgggttt gaaggtggag acagaatcag tgaacttttt gactatgttc aatctgttcc 6420 tgtcatggct gttcaaacaa aagaaatgga gatacccaag ggtctctttg gtctgatggg 6480 caaacgcacg gtcaaatctt tcgaattcac atccaaagcg gggaatgcaa gaagaagaga 6540 gtggtccaag cttaagatct caggagatgt cgctggggtt aagttgccag cttttggtgg 6600 tgaatttgag agatctgact ctataggaag aaggaaaaag aaattggaga cgcctgaaaa 6660 acctggatcc attacttcag aggggtcatt ggtcagtgac atatctgcaa gagaatttca 6720 gtttgctaga caggatcagg agggaaagaa tggcagccac tttgaacctg cagctgaagg 6780 tggacaggga gttgagggct ttcctggcgg aggccaatcg tcccttgcat ggaaagacag 6840 ggggaacagt ggaactgata ctggagtcca tcttcgcaaa catcgcagtt caaggaacct 6900 cggagcaaac ggaattcctc gacgtggaag tcgaggtgaa gaagagtggg gatcccacag 6960 tgctgcagaa gtacaatctg aggacggtcg tggagctgat caagcttttt cggaccacat 7020 cttcggacaa aaacatcaat acccttacct ttaggcagat atgtgaagcc ttcgccccgg 7080 aagccaggga tgggttggtt aaactcaaga caattggtgt tttcaccaat ctgtataaaa 7140 caatgccgga ggtgggcaat aaatatcctg agcttatgtt tgatttcaac aaagggctta 7200 acccgatgct gatgaacaag acccagaggg tggttgtcac taaccttaac cgacgccttt 7260 tacaaactga atttgctaaa agtgagaatg aggcaaagat tgcttcggtt tctaacgatt 7320 tgtgcattta acaggtggag aagatgttgg ttgaggttga ataaataaat gaactcaaga 7380 acccgtgaat gagtataaag agtcacggta tttgaattgg agtgtttaaa cttaatatta 7440 aatagcctat agacttttaa atattttact atat 7474 //