ID EU142040; SV 1; linear; genomic RNA; STD; VRL; 6718 BP. XX AC EU142040; XX DT 02-OCT-2007 (Rel. 93, Created) DT 28-OCT-2021 (Rel. 144, Last updated, Version 3) XX DE Aquamavirus A1 isolate HO.02.21, complete genome. XX KW . XX OS aquamavirus A1 OC Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; OC Picornavirales; Picornaviridae; Aquamavirus. XX RN [1] RP 1-6718 RX DOI; 10.1128/JVI.01240-07. RX PUBMED; 17942560. RA Kapoor A., Victoria J., Simmonds P., Wang C., Shafer R.W., Nims R., RA Nielsen O., Delwart E.; RT "A highly divergent picornavirus in a marine mammal"; RL J. Virol. 82(1):311-320(2008). XX RN [2] RP 1-6718 RA Kapoor A., Victoria J., Simmonds P., Wang C., Shafer R., Nims R., RA Nielsen O., Delwart E.; RT ; RL Submitted (06-SEP-2007) to the INSDC. RL Molecular Virology, Blood Systems Research Institute, 270 Masonic Ave., San RL Francisco, CA 94118, USA XX DR MD5; 65598c3856df27e414fc2dbc0312f31d. DR EuropePMC; PMC2224395; 17942560. DR EuropePMC; PMC4093777; 23804566. DR EuropePMC; PMC4376133; 25726971. DR EuropePMC; PMC4403396; 25631076. DR EuropePMC; PMC4635496; 26018961. XX FH Key Location/Qualifiers FH FT source 1..6718 FT /organism="aquamavirus A1" FT /host="Pusa hispida" FT /isolate="HO.02.21" FT /mol_type="genomic RNA" FT /country="Canada" FT /isolation_source="nasal epithelium, lymph node and lung" FT /note="acronym: SePV1" FT /db_xref="taxon:2870389" FT 5'UTR 1..506 FT gene 507..6659 FT /gene="SPV1gp1" FT CDS 507..6659 FT /codon_start=1 FT /gene="SPV1gp1" FT /product="polyprotein" FT /db_xref="GOA:A8D7N3" FT /db_xref="InterPro:IPR000199" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001676" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR029053" FT /db_xref="InterPro:IPR033703" FT /db_xref="UniProtKB/TrEMBL:A8D7N3" FT /protein_id="ABV57376.1" FT /translation="MESFVETVTKSLPVVGPMVSAAETAVTNMLNPAGPSAPQAISAQE FT QVQPQQIPEPKPVTVAMPNATYTTSSDVSFGPRPPLGSDIALSNAAAANTGALNQLKFV FT EVQQFVLRNNTNPFTGIASFALPKSYYSNKEFPQYGNARFFSMVRSGFVAQLQVNVAPG FT SSGLYLLAWCPPTQKDLSKLDYRAIGNFPSVLMDISRMTTATLDIPYISDTNYVKIDSD FT DQGYILVVPIAPYNAGPQTDSEVLATMFVAAREGDLQCPTPYREGFVKPETYPIMNIQN FT PPGAINLASFETALNAPSLALAGEGHLIDTHTPGGYAPISDLIDLSHIPSMVTNDTTDY FT HYFDWTDTTNKDEIIGKFNFKLNSVPNSAILANSYSFFRGPIIFHVIAAASTMHRGRLR FT VCFRPNSNQEYSAPQSMAVYYSLLDISQSNCCTLAVPFNSETWMRSTDDVLGRLQIFVN FT NQLAANRTAANHVYVYVTASLGPDAAFYCPRSGKIEFTDQGNFESFLRPPPPEYPVNAI FT PQKTELFGESHTLVKHLFGRFTYLGYYTPDSGGWKKVALNIPKRGVVNLMRAFCYWSGE FT AVLCITNNDDAPVEITHTFFDQPDELVDMSSHGSVLVPGKSSVVTAVPFYSLTPVRSLS FT KPDPFGFLYIAALGTSRKVVVHLAFRNLRLYLFSGFPILDYSKLQSGCFCPLPNVYVPP FT THNVLLDGDVESNPGPLYVCSQPGKCDPFPPVLGKYYAFASNYVQDHVCSCFLPKVIVE FT ARVLIKPTPICFMCYFSHKIRDFTEARIICHGSCERHSIDYEPPCKRRLVLDVEEQGFM FT DVVCRMFSATYHDKVLRDHKNYIIRSCLNMLALSMSNDKCVSAIVAAAITYDTVTVVPP FT AELKYLITLLVAQTYDVFVNALSLVFGRLPRNVYDVARRVFSSRPTQQGFASFTSALRA FT CEWWIKTIAKFVSWVKTTCFSNPLVGEARDQLSELLAAAEQLVLDVVNLAIPREVIEAR FT RSNILDKLSYAKKLSVNIPELDALVNKASLALRKVPATYVTPSHPRVEPLGVWLRGAPG FT SGKSILMCKLARDVSLIKNSSVFYHPTGSNFFSGYHGQYVHCIDDLGQNKDEKDISLIC FT QCISSSHFTAPMANIEDKAMQYSSNLVIATTNMTSFRTYTLTTPAALERRFPLVCDIVP FT KYSKPNGTLNLNFDPHDCWKITCNGQEMCYMDLFNLVLERLTEREKLHADMCRQNNELD FT DLEIDDDIRAKISLPFHTPFDDIVQMQCPYTVERKKFYDRYLSSIKSDKLSHTATLVIG FT MLCGASLFTLATHAFSFVSNCFSHGEDPPGPGPDCVRLPESAYEGCSTRKTARQLARSV FT VGEGAYDGNVKRTTARELARKAIPSEQGPSDVSEFVHLLKFCAYVETPSGPVFGVILGG FT RKMYFNTHYASVILDKDVTVCTPNKKYFTRLTKVSSNYDTMIVQLDIPELLPSISKYVS FT SSVPADALLLYFTGKGFYSQSVSQVSYLPCLEVREGMHGASYAYTTRTQKGMCGGLLVG FT KIDGAFKALGFHAAGSLERGFANAFNSVPPLSTVPDFPESINLSGLFSNDVEGVVVGQF FT EGEMLHRSIRTKFRPTDLQNKIVPELEPAVLSASDPRLKVQIDGDLPDHLCKKWKVNTK FT VSRPDVLELVVNEYISSLDCEQFEPVTLNEAINSSESPLNFNGTAGAKYPGMNRRQLLL FT PLNPQVRDDVVKLAGDVGNGTATVVFETFMKDELRPKEKIESGKTRIVESCPLDYLLLY FT RMVMLKSMIWWYNSDCIKTGVAPGMNVYTDFVPMVKQFKKIKYCLDFSAYDSTLSDEIL FT AAGVEVLACTSAVPSYVRKLHAPIICSHHWHNNVVDLVLGGMPSGAPCTSVLNSIVNVL FT MARYICALMDIDYPVMVAYGDDNVVSFDEEIDIERMVSLYKTEFGVTATNHDKTPVPRP FT MANPVFLKRRLRFNPDLNIQFPVLPLGEMIDRMCWTRGPEHLSDQTFSFAIELAGYGKQ FT VYTHIRDAFFPYMILPPYSLMENTVRSVCGLNPVQSFLSKYNFGPDDRKKKGIGCWPW" FT mat_peptide 507..1304 FT /gene="SPV1gp1" FT /product="VP0" FT /note="capsid protein; uncleaved precursor of VP2+VP4" FT mat_peptide 1305..2000 FT /gene="SPV1gp1" FT /product="VP3" FT /note="capsid protein" FT mat_peptide 2001..2546 FT /gene="SPV1gp1" FT /product="VP1" FT /note="capsid protein" FT mat_peptide 2547..2633 FT /gene="SPV1gp1" FT /product="2A1" FT mat_peptide 2634..2933 FT /gene="SPV1gp1" FT /product="2A2+2A3" FT mat_peptide 2934..3263 FT /gene="SPV1gp1" FT /product="2B" FT mat_peptide 3264..4154 FT /gene="SPV1gp1" FT /product="2C" FT mat_peptide 4155..4478 FT /gene="SPV1gp1" FT /product="3A" FT mat_peptide 4479..4616 FT /gene="SPV1gp1" FT /product="3B" FT mat_peptide 4617..5222 FT /gene="SPV1gp1" FT /product="3C" FT /note="proteinase" FT mat_peptide 5223..6656 FT /gene="SPV1gp1" FT /product="3D" FT /note="RNA-dependent RNA polymerase" FT 3'UTR 6660..6694 XX SQ Sequence 6718 BP; 1700 A; 1445 C; 1490 G; 2083 T; 0 other; ttcaaaggtg gcgggagagt tggcctcacg ctgtttagcg tgagagctgg ctctcctgcc 60 ccttcccctg agccggggat cttggctcat tcccctcttt tctatcctcc ctcattggac 120 tttacggatg acccggcata aacttgacaa ccgatgttgg atttcccttg tggctgtgat 180 ggaggacata ccctcgggtg tagttgtgtg cgtgtcgctc tgcgactcga gcttcaaagt 240 ggtgctgaaa tattgcaagc gtcgttgctc gattaacgga gtggtacaat cctatgaacc 300 caagtgcatt catgcgaaag ccccggaggg gtgagtagca tggactcgaa tcagaagagc 360 tggagctcgc ttggtacggc acgtagcatt gctttgccta aagaccaagg gggtatggct 420 ataggtgggg gcctatagct tgtccagtgc tggttgacag actcgtgcta cgcgtctggt 480 tcgagtataa gtagctgcaa ctcactatgg aatcttttgt tgaaaccgta actaagtctt 540 tgcctgttgt cggaccaatg gtctcggcag ctgaaactgc tgtaaccaat atgcttaatc 600 ctgcgggccc atcagctccg caagcaatta gtgcccagga acaagtgcaa ccacagcaaa 660 ttccagaacc caagccggta acagttgcca tgcccaacgc cacatacacc acctccagtg 720 atgtttcgtt tggaccaaga cctcctcttg gctcagacat agctctctca aatgccgctg 780 ctgctaatac gggtgcatta aatcagttga aatttgtaga agtgcaacag tttgtattga 840 gaaataacac caacccattc acaggcattg cctctttcgc tctgccaaaa agttactata 900 gcaataagga gttcccgcag tacgggaacg ctagattttt ctcaatggta agatcaggct 960 ttgtagcaca actccaggtg aatgttgccc ctggcagtag cggactgtat ttattagcat 1020 ggtgtccgcc cacacagaaa gatttgagta aactagacta tagggctatt ggcaattttc 1080 cttcagtact tatggatata tccaggatga ctactgccac tcttgacatt ccttacatta 1140 gtgacactaa ttatgtaaaa attgatagtg atgaccaagg ttatatttta gttgttccca 1200 ttgccccata taatgctggc ccacaaacgg attctgaagt tcttgctaca atgtttgttg 1260 ctgctaggga aggtgaccta cagtgtccta ctccataccg tgaaggcttt gtgaaacccg 1320 aaacataccc aattatgaac atacagaacc ctccaggagc tattaatctg gcctcctttg 1380 aaacagcgct gaatgctcca tctctcgccc ttgctggtga gggacatttg attgacacac 1440 acacccctgg agggtatgca cctattagtg atttgattga cctgtctcac ataccatcca 1500 tggttacaaa tgacacaaca gattaccatt actttgattg gactgataca actaataagg 1560 atgaaattat aggtaaattt aattttaagc taaacagtgt ccccaattcg gcaattttag 1620 cgaattcata ttcttttttt agagggccta taatttttca tgttatcgct gctgcatcaa 1680 cgatgcatag aggtaggctc agagtttgct ttagaccaaa ttctaatcag gaatatagtg 1740 ctcctcagtc aatggctgta tattattctc ttttagacat ttcccagagt aattgctgta 1800 ctcttgctgt cccttttaat tcggaaacgt ggatgaggag cactgatgat gtgttgggaa 1860 gactccagat ttttgttaat aaccagcttg ctgctaacag gactgctgct aatcacgttt 1920 atgtttatgt gactgcttct cttggacctg acgccgcatt ctattgcccg cggtccggaa 1980 aaatagagtt tactgatcaa ggcaattttg aatcttttct cagacctccc ccccctgaat 2040 accctgttaa tgctattccc cagaaaactg agctctttgg tgagtcccac actcttgtca 2100 agcatttatt tggaaggttc acatatttgg gctactacac tcccgacagt ggtggatgga 2160 agaaggtggc cctcaacatt ccaaaacgtg gtgtggttaa tttgatgaga gccttctgtt 2220 actggtctgg tgaagctgta ttgtgtataa caaataatga tgatgcccca gtggagatta 2280 ctcatacatt ttttgaccag cctgatgaac ttgttgatat gtcttctcac ggctctgttc 2340 ttgttccagg aaaatcttca gttgttactg cagttccttt ctatagttta actccagtta 2400 ggtctttgtc taaacctgat ccgtttggat tcctctacat tgctgcacta ggtacgtcac 2460 ggaaagtggt tgttcatttg gcctttcgta atcttaggct ctacctgttc tctggtttcc 2520 caatattgga ttattccaag ctgcagtctg gttgcttttg ccctcttccc aatgtgtatg 2580 tgcctccaac tcacaatgtt ctgctggatg gagatgtcga gagcaaccct ggccctctgt 2640 atgtttgttc ccaaccaggt aagtgcgatc catttccccc cgttttagga aagtattatg 2700 cttttgctag taattatgta caggaccatg tgtgttcttg ttttctcccc aaagttatag 2760 ttgaggccag agttttgatt aagcctactc ctatctgttt tatgtgctac ttttcccata 2820 aaataagaga ttttactgag gcacgcatca tctgtcacgg gtcgtgtgaa cggcactcca 2880 ttgactatga acctccttgt aagaggaggc ttgttctcga tgttgaggag caaggattta 2940 tggatgttgt gtgcaggatg ttctctgcaa catatcatga caaggtgttg agagatcaca 3000 agaattacat cattaggagt tgcctcaaca tgcttgccct ttctatgtcc aatgataagt 3060 gtgtttctgc cattgttgct gctgccatca catatgatac tgttactgtt gtaccacctg 3120 ctgagttgaa gtacctgatt acacttctgg ttgcccaaac ttatgatgtg tttgttaatg 3180 ccctgagtct tgtgtttggc cgcttgcccc gtaatgtgta tgatgttgct cgccgtgtat 3240 tctcttcccg ccccactcaa caaggctttg cttccttcac ctctgcgctg cgcgcatgtg 3300 agtggtggat taaaacaatt gccaaatttg tttcctgggt aaaaaccact tgcttctcca 3360 atccactagt gggtgaggcg agagaccagc tgtctgaact tctcgctgca gcagaacagt 3420 tagttttaga tgtagtcaat ttggctattc cccgagaagt tattgaggct aggcgctcta 3480 acattcttga taagctatct tatgcaaaga agttgtctgt caatattcct gaattggatg 3540 ccttggtcaa taaggcgtcc cttgctctgc gtaaagtccc tgcaacatat gtaacaccat 3600 ctcatcctcg tgttgaaccg ttaggggttt ggttgcgcgg agctcctgga tcaggtaagt 3660 ctatattaat gtgtaaatta gctagggatg ttagcttgat aaaaaacagt tctgtgtttt 3720 atcatccaac tggatcaaat ttcttctctg ggtaccatgg acaatatgtt cactgcattg 3780 atgatttagg acaaaataaa gatgagaaag acatttcact tatttgccag tgtatttcct 3840 cttcacactt tactgcgccc atggctaaca ttgaagacaa agccatgcaa tattcttcta 3900 atttggtgat agcgacaaca aatatgacca gttttaggac atacaccttg accactcctg 3960 ccgcacttga gagacgtttt cctctggtgt gtgatattgt ccccaagtat tccaaaccaa 4020 atggaactct taatcttaat tttgaccctc atgattgttg gaagatcact tgtaatggac 4080 aggaaatgtg ttacatggat ttgtttaatt tggttttaga acgcctgacc gagagagaga 4140 aacttcatgc ggacatgtgc agacaaaata atgagctaga tgatcttgag attgatgatg 4200 acattagagc caaaatatct ttaccatttc acactccttt tgatgatatt gtgcagatgc 4260 aatgcccgta tactgtagaa agaaagaagt tttatgatag gtacctttct tctatcaaat 4320 ctgacaaatt gtcccataca gcaactttag tgattggtat gctttgtggc gcatctctat 4380 ttacccttgc cactcatgct ttctcatttg tctccaattg tttttcacat ggtgaggatc 4440 cgccaggacc tggccctgac tgtgtgcgtt taccagagtc agcatatgag gggtgttcca 4500 cgcggaaaac agccaggcaa ctggctcgtt cagttgttgg tgagggagcg tatgacggta 4560 acgttaagcg caccactgcc cgcgagcttg ctcgcaaggc gataccctca gagcaaggcc 4620 cctctgatgt ttcagaattc gtccacctcc taaaattctg tgcctatgtt gaaactcctt 4680 caggaccagt gtttggtgtc atcttaggtg gtagaaaaat gtactttaat acgcattatg 4740 cttcagttat cttggacaaa gatgttactg tgtgtacacc caataagaag tactttacaa 4800 gattaactaa ggtaagttca aattatgaca caatgattgt tcaattggat attcctgagt 4860 tgttgccaag catttctaag tatgtatctt cctctgtccc cgccgatgca ttgcttttgt 4920 attttactgg taaagggttt tactctcagt ctgtttcgca ggtgagctac ttgccatgtc 4980 tagaagtgcg cgagggaatg catggcgcgt cctatgcata cacgactcgt acacagaaag 5040 gcatgtgtgg tggtttgctc gttggaaaga ttgatggagc ttttaaagca ctaggctttc 5100 acgctgctgg aagtcttgag cgtggctttg ccaacgcatt taattctgtc ccccctcttt 5160 caactgtgcc tgatttccct gaatctatta atttatctgg attattttca aatgatgttg 5220 aaggtgttgt tgtgggtcag tttgaaggtg aaatgttgca tagatcaatc aggactaaat 5280 tccgccctac ggatttgcag aataaaattg ttccagaact tgaaccagct gtcttatcag 5340 caagtgatcc tcggctgaag gtgcaaattg acggagatct tcctgatcac ttgtgcaaga 5400 agtggaaagt gaacaccaaa gtttctcgtc cagatgttct tgaattggta gtaaatgagt 5460 atatttcttc cttggactgt gagcaatttg aacccgttac tctgaatgaa gccataaact 5520 catctgaatc acctctaaat ttcaatggaa cagccggtgc caaataccct ggtatgaacc 5580 gacgccagct tctgcttccg ctgaaccctc aggtacgaga cgacgtggtg aagctggctg 5640 gtgatgtagg gaatggaact gccactgttg tgtttgaaac ttttatgaag gatgaactgc 5700 gaccaaaaga gaagattgag tccggaaaaa ccaggatagt tgaatcatgt cctctagatt 5760 acttgcttct gtatagaatg gtgatgctaa aatcaatgat ttggtggtat aattctgatt 5820 gtataaagac tggtgtggct cccggaatga atgtgtacac tgattttgtt cccatggtta 5880 agcaatttaa aaagattaag tactgccttg atttttctgc ttatgattct actttatctg 5940 atgagatatt ggcagctggt gttgaagtgt tggcttgtac atcagctgtc ccttcttatg 6000 ttagaaaact gcatgcacct attatttgta gccaccattg gcacaacaat gtagttgatt 6060 tggttttggg tggcatgcct tctggtgctc cttgcaccag tgttctaaat tcaattgtta 6120 atgttttaat ggctaggtac atttgtgctc ttatggacat tgactacccg gtcatggtgg 6180 catatggaga tgataatgtt gtatcatttg atgaggagat agacatagag agaatggttt 6240 ccttgtataa gacagaattc ggtgttactg ctacaaatca tgataagact cctgtgccaa 6300 gacccatggc caatcctgtg ttcctcaagc gccgcctgag gttcaaccct gatttaaaca 6360 ttcagtttcc tgtgcttcct cttggagaga tgatcgatag gatgtgctgg actcgtggtc 6420 cagagcacct gtcggatcaa actttctcct ttgctattga attggctggc tatggtaaac 6480 aagtttacac tcatattcga gatgctttct ttccctacat gatattgcct ccctattctc 6540 ttatggaaaa cacagttcgc tcagtgtgtg ggctgaaccc agtgcaatcg tttctgtcca 6600 agtacaactt tggaccagat gaccgcaaga agaagggcat tgggtgttgg ccatggtagt 6660 gccatacact actgtgcgat ctacaggtta gataaaaaaa aaaaaaaaaa aaaaaaaa 6718 //