ID EF582385; SV 1; linear; genomic RNA; STD; VRL; 7099 BP. XX AC EF582385; XX DT 14-NOV-2007 (Rel. 93, Created) DT 14-JUL-2023 (Rel. 144, Last updated, Version 2) XX DE Rhinovirus C4, complete genome. XX KW . XX OS rhinovirus C4 OC Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; OC Picornavirales; Picornaviridae; Ensavirinae; Enterovirus; Rhinovirus C. XX RN [1] RP 1-7099 RX DOI; 10.1128/JCM.01254-07. RX PUBMED; 17804649. RA Lau S.K., Yip C.C., Tsoi H.W., Lee R.A., So L.Y., Lau Y.L., Chan K.H., RA Woo P.C., Yuen K.Y.; RT "Clinical features and complete genome characterization of a distinct human RT rhinovirus (HRV) genetic cluster, probably representing a previously RT undetected HRV species, HRV-C, associated with acute respiratory illness in RT children"; RL J. Clin. Microbiol. 45(11):3655-3664(2007). XX RN [2] RP 1-7099 RA Lau S.K.P., Yip C.C.Y., Tsoi H.W., Lee R.A., So L.Y., Lau Y.L., Chan K.H., RA Woo P.C.Y., Yuen K.Y.; RT ; RL Submitted (27-APR-2007) to the INSDC. RL Microbiology, The University of Hong Kong, Rm 440, University Pathology RL Building, Queen Mary Hospital, Pokfulam Road, Hong Kong, China XX DR MD5; 33db59ad4cba6c4be72da7bf64b81444. DR EuropePMC; PMC2168475; 17804649. DR EuropePMC; PMC2491478; 18541697. DR EuropePMC; PMC2630738; 18976575. DR EuropePMC; PMC2712091; 19633719. DR EuropePMC; PMC2738104; 19625482. DR EuropePMC; PMC2937769; 20668080. DR EuropePMC; PMC3749525; 23677786. DR EuropePMC; PMC3957863; 24366736. DR EuropePMC; PMC4851184; 27199901. DR RFAM; RF00229; IRES_Picorna. DR RFAM; RF00386; Entero_5_CRE. XX FH Key Location/Qualifiers FH FT source 1..7099 FT /organism="rhinovirus C4" FT /strain="024" FT /mol_type="genomic RNA" FT /country="Hong Kong" FT /isolation_source="nasopharyngeal aspirates of patients" FT /db_xref="taxon:2045077" FT CDS 616..7050 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:A8S322" FT /db_xref="InterPro:IPR000081" FT /db_xref="InterPro:IPR000199" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001676" FT /db_xref="InterPro:IPR002527" FT /db_xref="InterPro:IPR003138" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR014838" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR029053" FT /db_xref="InterPro:IPR033703" FT /db_xref="InterPro:IPR036203" FT /db_xref="UniProtKB/TrEMBL:A8S322" FT /protein_id="ABU62848.1" FT /translation="MGAQVSKQNVGSHENSVSATGGSVIKYFNINYYKDSASSGLTKQD FT FSQDPSKFTQPLAEALTNPALMSPTVEACGMSDRLKQITIGNSTITTQDTLNSILAYGE FT WPKYLSDLDASSVDKPTHPETSSDRFYTLTSVDWTTTSKGWWWKLPDCLKDMGIFGQNL FT YHHALGRSGYIIHTQCNATKFNSGCLIVAVVPEHQLAYIGEANVNVGYDHTHPGEGGHV FT IGSNVRRDNKQPDEDPFFNCNGTLLGNITIFPHQLINLRTNNSSTIVVPYINCVPMDNM FT LRHNNLSLVIIPIVPLRAANGVTKVPITISIAPDKSEFSGARQSVKQGLPTRLPSGSQQ FT FLTTEDEQSANLLPDFSVTKIIDIPGRITNILHMAMVDSFMPLNNIETNVGQISIYNVQ FT VTKKTADKPIVVIPMDISNTLFSTTLLGEVLNYFANWSGSISITFMCVCDSFSTGKFLL FT AYTPPGAALPPDRKTAMLGVHVIWDLGLQSSCTIVVPWMSGTFHRRTKADNYTQAGYVS FT LWYQTDFVSPNDGIGTIVATCSGCPDLSVRMLRDTPMMKQEKDLTQNPVEDYIDKVVDT FT VLQVPNTQPSGPQHSIQPSALGAMEIGASSTTIPGDLIETRYVINSNTNSEALIENFMG FT RSALWAKIQVANGFAKWDINFQEHAQVRKKFEMFTYARFDMEVTVVTNNTGLVQIMFVP FT PGIDAPDSIDSRLWDSASNPSVFYQPKSGFPRFTIPFTGLGSAYYMFYDGYDVPRNKSN FT AVYGITSTNDMGTLCFRAMEDTNEHSIRVFVKPKHTIAWIPRPPRATQYTHKFSTNYHV FT KKPDDTTGLLIQKHFINHRTDIKTAGPSDLFVHTATMIYRNAHLTSLNDKTVLLALSAD FT LQVDAADQPGPDTIPQCDCLEGCYYSKSLDRYIPVKLEAHDWYQIEETCYYPQHIQYNI FT MIGEGHCQPGDCGGKLLCTHGVIGIITAGGDNHVAFTDLRPYSCLDTHQGPIQDYVTQL FT GSAFGSGFTDTLKDQLTDVSAHIKDKITSKVVKWLVRIISALTIMIRNSTDTPTVLATL FT ALLGCHKSPWSFLKDRLCQWLNITRPPSRQGDGWLKKFTECCNAAKGLEWIGIKISKFI FT EWLKNRLLPTLQHKKEILDECKKIDLYQEQVKGFSKVDEPAQQELLIKVEKLKKGLDSL FT APLYAVENKRVTNIYKELKALSAYKTTQRTEPVCILIRGAPGCGKSLVTSIIARGLTKP FT GDIYSLPPDPKHFDGYDQQEVVIMDDLGQNPDGKDLSMFCQMVSTTNFIPPMAALEDKG FT KTFTSKYILASTNLLNLQPPTVTVPEAIDRRFYLDLDLKILQGYQNQVGLLDTAKALQP FT CANCSKPPHYKQCCPLLCGKAVVLVNRRTKGSYAINMVVQQLIEESKSRKSVGNNLTAI FT FQGLGDKETPGFIIDLLSSSKDPKVIQYCQDQGYISPVHGSIERDFAYVTYALNCLGSL FT VIILGTIYALYRLMCIAQGPYTGMPTTPKKKPELRRATLQGPEHEFLNALIRRNCHIIT FT TDKGEFNLLGIYSNCAVVPTHAEPGDVVDIDGRLVRVLKQQVLTDMNDVDTEVTVLWLD FT QNEKFRDIRRFIPEHQQDWHNIHLATNVTKFPMLNVEVGHTVPYGEINLSGNATCRLYK FT YDYPTQPGQCGAVLANTGNIIGIHVGGNGRVGYAAALLRKYFAEEQGAIISKCNVKEKN FT WKPVNTPSQTKLHPSVFHDVFPGVKEPAALHPKDPRLEVDLTTAVMSKYKGNIDVPMNE FT YIETAVDHYAAQLYMLDINPEPITMEQAIYGYANLEPLDLTTSPGFPYVSLGVKKKDIL FT NNATKDTRKMQQMLDLYGIDLPYITFLKDELRAPEKIKAGKTRIVEAASVNDTVYFRTT FT FGNLYSTFHANPGILTGSAVGCNPDVFWSQMHAMLDGELIAFDYTNYDGSLEPVWFKAL FT GKVLDQLGFPGHLTQRLCNTTHIFRDTTYDVKGGMPSGISGTSIFNTMMNNIIIRTLVL FT ETYKNINLDKLRIIAYGDDVVASYPDELDPKEIAMTAKRYGLTITPPDKTDQFSKMTWD FT NVTFLKRKFKPDSKYKFLIHPVYSMQDVYESIRWTKDPKNTQDHVHSLCLLAWHNGEEV FT YEDFCAKIRTTSVGKSLYLPPYKYLYRQWIDLFI" FT mat_peptide 616..816 FT /product="VP4" FT mat_peptide 817..1599 FT /product="VP2" FT mat_peptide 1600..2304 FT /product="VP3" FT mat_peptide 2305..3126 FT /product="VP1" FT mat_peptide 3127..3552 FT /product="2A" FT mat_peptide 3553..3849 FT /product="2B" FT mat_peptide 3850..4827 FT /product="2C" FT mat_peptide 4828..5052 FT /product="3A" FT mat_peptide 5053..5118 FT /product="3B" FT /note="VPg" FT mat_peptide 5119..5667 FT /product="3C" FT /note="protease" FT mat_peptide 5668..7047 FT /product="3D" FT /note="polymerase" XX SQ Sequence 7099 BP; 2195 A; 1565 C; 1473 G; 1866 T; 0 other; ttaaaactgg gctcgggttg tacccacccg agctgcccat gtggcgtggt gctcttgtat 60 cccggtacac ttgcacgcca gtttgcctct ccttaccccg taacatatct agaagaatgt 120 gcataacgga ccaataggtg gtggcaaccc atgccactga cggtcaagta cttctgtttc 180 cccggtgtga tgtggaatag actctctcag ggttgaagcc ataagcatcg ttatccgcta 240 cgtgcctacg caaaacctag tagcattttg aagcttactt ggttggccgc tcagccacta 300 acccgtggta ggcctggcag atgaggctgg gcgcacccca ctggcgacag tggcccagcc 360 tgcgtggctg cctgcccctc tttgagggga agccatttaa gtgacaaggt gtgaagagtc 420 tcgtgtgctc cacgtagaat ccttccggcc cctgaatgtg gctaatccta accccgcagc 480 tattgcacac aatccagtgt gttgatagtc gtaatgggca actgtgggat ggaaccaact 540 actttgggtg tccgtgtttc ctgttttctt taaatacttg cttatggtga caaatagtgt 600 atactgtttg acaccatggg cgcacaggtc agcaagcaaa atgtcggctc gcatgaaaac 660 tcagtctcag ccacaggtgg atccgtgatt aagtatttca acatcaatta ctacaaggat 720 tctgctagct ctggcttgac taaacaagat ttttcccaag acccatcgaa attcacacaa 780 cctctagcag aagcacttac aaatccagct ttaatgtcac caactgttga agcatgtggg 840 atgtccgata ggcttaaaca aattactatc gggaattcca ctataacaac acaagataca 900 ctaaactcta tactggcata tggggagtgg cccaaatact tgagtgacct ggacgcttcc 960 tcagtggata aacctaccca cccagaaaca tcatctgata gattttacac attaactagt 1020 gtagattgga ccactacgtc taaaggttgg tggtggaagt tgcctgattg ccttaaagat 1080 atgggcatct tcgggcaaaa tctgtaccat catgcattgg gtaggtcagg gtacataata 1140 cacacccaat gtaatgccac aaaattcaat agtggttgtc taatagtggc tgttgtacca 1200 gaacaccagc tagcttacat aggtgaagca aatgtcaatg ttggttatga tcacacacac 1260 cctggtgagg gaggacatgt aattggttca aatgttagga gagataacaa gcaacctgat 1320 gaagacccct tctttaattg taatgggacc ctgcttggta acatcactat attcccacac 1380 cagctcataa acttgaggac aaacaattcc agcacaattg ttgtaccata cattaattgt 1440 gtacctatgg acaacatgct caggcacaac aacctatctc tagttattat tccaatcgtt 1500 cctctcagag ccgcaaatgg tgtcaccaag gtccccatta caatctcaat agcaccagat 1560 aagtcagagt tctcaggggc tagacagtct gtaaaacagg ggttaccaac acggctgcca 1620 agtggatctc aacaatttct cacaactgag gacgagcagt cggctaatct tctaccagac 1680 tttagtgtca caaagatcat cgacattcct ggtaggatca caaacatact ccacatggct 1740 atggtagatt cattcatgcc actaaacaac attgagacca atgtaggaca aatctcaatt 1800 tacaatgtac aagtgaccaa gaaaacagca gacaagccca tagttgtgat acccatggac 1860 attagcaaca ctctcttttc taccacttta ctaggtgaag ttcttaatta ctttgcaaat 1920 tggtcaggta gtatctctat aacttttatg tgtgtttgtg atagctttag tacaggtaaa 1980 tttttgctag catacacacc cccaggagcc gctttgccac cagacaggaa aaccgcaatg 2040 ttaggtgtac atgtaatctg ggatttggga ctccaatcct cgtgcaccat tgtagtacca 2100 tggatgagcg gcaccttcca tagacggact aaagctgaca attacaccca ggctggatat 2160 gtgtcactat ggtaccagac tgattttgtg tcaccaaatg atgggattgg gacaatcgtt 2220 gctacatgct ccggatgtcc tgatttgtct gttagaatgc tgcgtgacac accaatgatg 2280 aaacaggaaa aagatttgac tcaaaaccca gttgaggact acatagacaa ggtggtcgac 2340 actgtactac aggtcccaaa cacccaaccc agtggtccac aacacagtat tcaaccaagt 2400 gctttgggcg ctatggaaat tggggcatct tcaaccacca taccaggtga tctcatagag 2460 actaggtatg taatcaactc aaatactaac agtgaagccc taattgagaa cttcatgggc 2520 cgctcagctc tttgggccaa gatccaggtg gcgaatggtt ttgcaaaatg ggatataaac 2580 ttccaagagc atgcacaagt cagaaagaaa tttgaaatgt ttacatatgc tagatttgac 2640 atggaagtta ctgttgtcac caacaacaca ggtttggtac aaatcatgtt tgtaccacct 2700 ggtatagatg caccagatag tattgactcc cgtctatggg attctgcctc caacccgagt 2760 gttttctatc aaccaaaatc aggttttcct aggtttacta ttccattcac tggattgggt 2820 tcagcttatt atatgtttta tgatggttat gatgtcccca gaaataaaag taatgctgtg 2880 tatggtatca catctacaaa tgatatgggg acactttgct tcagagctat ggaagacacc 2940 aatgaacaca gcattagagt ctttgtaaag cctaaacata ccatagcatg gattccacga 3000 ccacctcgtg ccacccaata cacccacaaa ttcagcacaa actaccatgt taagaaacca 3060 gatgacacta ctggactact aatacagaaa cactttatta accacaggac tgatataaaa 3120 actgcaggcc caagtgatct ctttgtccat acagccacta tgatttacag gaatgcgcac 3180 ttaaccagct tgaatgacaa aaccgttcta ctggctctca gtgcagatct ccaggtggac 3240 gcagctgacc agccaggccc agataccatc ccacaatgtg actgcttgga gggctgctac 3300 tatagcaaaa gtttagatag atatatacca gttaaattag aagcacacga ctggtatcag 3360 atagaggaaa cctgttatta cccacagcac atccagtata atataatgat tggtgaagga 3420 cattgtcagc ctggagactg cggagggaag ttactgtgca ctcatggtgt gattggcatc 3480 atcacagctg gtggagacaa tcatgtagct ttcacagatc taagacccta ttcatgttta 3540 gacactcacc aaggtcctat tcaggactat gtgacacaat tagggagtgc ctttggtagc 3600 ggtttcactg acacacttaa agaccaattg acagatgtga gtgcccatat taaagacaaa 3660 attacttcaa aggtagttaa atggctagta cgtatcatca gtgcacttac cataatgata 3720 cgtaacagta ctgacacacc cactgtactt gcaacccttg ctcttttagg ctgtcacaag 3780 tcaccatggt catttctcaa ggaccggtta tgtcagtggt taaacatcac tagaccgcca 3840 agccgacaag gtgatggctg gttgaagaaa ttcactgaat gctgcaacgc cgctaagggc 3900 cttgagtgga ttggcattaa gatcagtaaa tttatagaat ggcttaaaaa tagactgctt 3960 cctaccttac aacacaaaaa agaaatctta gatgaatgca agaaaataga tctttatcaa 4020 gaacaggtta aaggattttc caaagttgat gaaccagctc agcaggaact actaattaaa 4080 gttgaaaaac tgaagaaagg tttagacagc ctagcacctc tgtatgcagt tgaaaacaaa 4140 agagttacaa acatctataa agaactcaaa gcattgtctg catataaaac aacacagaga 4200 actgaaccag tatgcatact gatcagagga gctcctgggt gtgggaaatc tttggttact 4260 tcaataatag ccagaggttt aaccaaacca ggtgacattt actcccttcc tccagaccct 4320 aaacattttg atgggtatga tcaacaagaa gtggtaatta tggatgatct gggccaaaac 4380 cctgatggta aggacctttc tatgttctgt cagatggtgt caaccactaa tttcattccc 4440 ccaatggcag ctctggaaga taaggggaag acctttacaa gtaaatatat attagccagc 4500 acaaatcttt taaatctcca accacccaca gtaacagtcc ccgaagccat tgacaggcgc 4560 ttctacttag atttagatct taagatcttg caagggtacc aaaatcaagt aggcttgcta 4620 gatactgcca aagcacttca gccctgtgcg aactgtagta agccaccaca ttacaaacaa 4680 tgttgtcctt tgctatgtgg taaagctgta gtactggtga acaggagaac taagggcagt 4740 tatgctatca acatggtggt tcagcaactt atagaggaga gcaaatccag aaagagtgtt 4800 ggcaataatt taacagctat atttcagggc ttgggtgata aggaaacccc aggtttcata 4860 atagatcttc tatcatcatc taaagaccct aaagtcattc aatactgcca agaccagggc 4920 tacatctcac cagtccatgg ctcaattgag cgagattttg cttatgtcac atatgctcta 4980 aattgtctag gtagtcttgt gattattctg ggtaccatat acgcattata tcgcttgatg 5040 tgtattgccc aaggaccata cacaggcatg cctactacac ccaagaagaa acctgagtta 5100 agaagagcaa ccttgcaagg tcctgaacat gaatttttga atgcccttat tagaagaaac 5160 tgccatatca ttaccactga caaaggagaa tttaacctac taggtatata ctctaactgt 5220 gctgtagtac caacacatgc tgaacctggt gacgtggtag atattgatgg aaggttagtt 5280 agagtgctta aacaacaagt cctcactgat atgaatgatg tggatacgga agtaactgtg 5340 ttgtggcttg accagaatga aaagttcaga gacataagaa gatttatacc tgaacatcag 5400 caagattggc acaatataca tttagctacc aatgtcacca aattccctat gctcaatgta 5460 gaagtaggac acactgtacc ctatggggaa atcaatctta gtggtaatgc tacatgcagg 5520 ttgtacaaat atgactatcc aacccaacca ggtcaatgtg gtgcagtgct ggccaacaca 5580 ggtaatatca taggaataca tgtgggtgga aatggtaggg ttggttacgc agcagcacta 5640 cttaggaaat attttgctga ggaacaaggt gccatcattt ctaaatgtaa tgttaaggaa 5700 aagaactgga aacccgtcaa tacaccctcc cagaccaaac tacaccctag tgtcttccac 5760 gatgtgtttc ctggtgttaa ggaaccagca gctttacacc ccaaggatcc acgattggaa 5820 gtagacctca ctacagctgt tatgtcaaaa tataaaggta atattgatgt ccctatgaat 5880 gagtacatag aaacagccgt tgaccactac gcggcacaac tttacatgct tgacatcaac 5940 ccagaaccaa tcaccatgga acaagcaata tatggttatg ctaacttgga accattggac 6000 cttaccacta gccctggttt cccttatgtg tctttgggcg tgaaaaagaa agacatctta 6060 aacaacgcta ctaaagacac aaggaaaatg caacagatgt tagatctgta tggtattgat 6120 ctaccctaca taactttcct aaaggatgaa ctccgcgccc cagagaaaat taaggctggt 6180 aagaccagga ttgtggaggc tgctagtgtc aatgatacag tgtactttag aacaactttt 6240 ggcaatctat acagtacttt tcatgcaaac ccaggtatct taacaggctc agctgtgggg 6300 tgtaatccag atgtgttttg gtcacaaatg catgctatgt tagatggaga actcattgct 6360 tttgattaca ccaattatga tggcagcttg gaaccagtgt ggtttaaagc gcttgggaaa 6420 gtgttagatc agcttggctt ccctggacac cttacacaaa gattgtgtaa tacaacccac 6480 atcttcagag acacaaccta cgatgtcaaa ggtggcatgc cgtcaggaat ttcaggtacc 6540 tccatattta acactatgat gaacaatatc ataataagaa ctctggtctt ggagacttac 6600 aaaaacatca atttggacaa actacgcatt attgcctacg gtgatgatgt agtagcctca 6660 tatccagatg aattggaccc aaaggagatt gccatgacgg ccaagcgtta tggtctcact 6720 atcactcccc cagataaaac agatcaattt tccaagatga cctgggataa tgtgaccttc 6780 cttaaacgta aatttaaacc tgactccaaa tacaaatttc tgatacatcc tgtttactca 6840 atgcaggatg tttatgagtc aatcagatgg actaaggatc caaagaacac gcaggaccac 6900 gtccattcgt tgtgtttgtt agcctggcac aatggagaag aggtttatga ggatttctgc 6960 gccaaaatta ggacaactag tgttggcaag agtctgtatt taccaccata caaatacttg 7020 tacagacagt ggattgacct cttcatttga ttggcccaca atctatatac taaattgttt 7080 gattagaact tagttagta 7099 //