ID EF155972; SV 1; linear; genomic RNA; STD; VRL; 7781 BP. XX AC EF155972; XX DT 25-JAN-2010 (Rel. 103, Created) DT 19-MAR-2010 (Rel. 104, Last updated, Version 2) XX DE Sweet potato mild mottle virus isolate R70LUW polyprotein gene, partial DE cds. XX KW . XX OS Sweet potato mild mottle virus OC Viruses; Riboviria; Potyviridae; Ipomovirus. XX RN [1] RP 1-7781 RX DOI; 10.1099/vir.0.016089-0. RX PUBMED; 19923261. RA Tugume A.K., Mukasa S.B., Kalkkinen N., Valkonen J.P.; RT "Recombination and selection pressure in the ipomovirus sweet potato mild RT mottle virus (Potyviridae) in wild species and cultivated sweetpotato in RT the centre of evolution in East Africa"; RL J. Gen. Virol. 91(Pt 4):1092-1108(2010). XX RN [2] RP 1-7781 RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.T.; RT ; RL Submitted (30-NOV-2006) to the INSDC. RL Department of Applied Biology, University of Helsinki, P.O. Box 27 RL (Latokartanonkaari 7), Helsinki FIN-00014, Finland XX DR MD5; 91eb5d620df6ed5d14147d78e3ea0c15. XX FH Key Location/Qualifiers FH FT source 1..7781 FT /organism="Sweet potato mild mottle virus" FT /host="Ipomoea tenuirostris" FT /isolate="R70LUW" FT /mol_type="genomic RNA" FT /country="Uganda:Luwero" FT /isolation_source="leaf" FT /db_xref="taxon:41459" FT 5'UTR 1..139 FT CDS 140..>5867 FT /codon_start=1 FT /product="polyprotein" FT /note="coding region disrupted by sequencing gap" FT /db_xref="GOA:D2SLM5" FT /db_xref="InterPro:IPR001456" FT /db_xref="InterPro:IPR001650" FT /db_xref="InterPro:IPR014001" FT /db_xref="InterPro:IPR025910" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR031159" FT /db_xref="InterPro:IPR042308" FT /db_xref="UniProtKB/TrEMBL:D2SLM5" FT /protein_id="ACQ45597.1" FT /translation="MGKSKLTYKQCIAKWGKAALEAQNNGSKRSVSVGTHQIAANIFAF FT YDAKDYHLFAMGKRGGLTPAADQLRIAIERGTIYKVQYNCHLCPDCDEIVDSDEGWSCE FT DCGSQFNKCDDNMLENKNDAARALGGWTEYEDATWASFEAAKADMLEVAPTVGQLEKEI FT RAIEKSAGKKLTAYEEELLEELAYKLDVVKMNEEKQETVFEETIFSLSNDEFPALKGPQ FT DEAINEDIEKHTEEYATEVMIEMEQFAEFESTHEENDEPVRKAVNAHVVAAPIVILSVT FT KSGMAIGKKKLTEKPNTIMCVTKSKTPTAIITTPSKSAVWVAKPKLASAISMYEPVVKS FT TVRASSDVINIGAMACPIMMSSVESHSHQNDKLDGTLNAQVEGATKEDEPVIKYNITFG FT SFNYEVSTKGERVQAAVQLDEMIEGPDTEPILISQTGSSHKYETKKASKGLFVQDRFSV FT IGNKVLCKSFPAFKNFMNETRLGGIYRTRKGNYKNAALRLLKATKVQVFYDGIKDVFEC FT SYCHMSSNELEGLNGDNCEKCKDLFYKHIDPPRKVEEEYLMIPLVPIDQHVHEEHSIIS FT KAKWEAHESICEGEVNIVKIFDGKPTASKKSFKTKQAPNVANIPLDDFMQEFVEICLER FT NTPIEIIGGVKSFNVVKLRHTTRDISKSGEDDMYPTEREWFCHKNKLCLCGGIDREKKI FT RSSEVRPGWSGVILHKNQVAECDWNKFVFIDDMCVVQGRNLITNKVENALEKKGANRLK FT QIQFYANSVIPNFKDEFDRASRLKADHEPDESSNNELIGRLAKLVAAVIPKGHLYCKTC FT CFRVIKSKRVDVANALNKAKQRGERDEFIYDELIKLFELQAPPPYKIATITNEDDMLRT FT LGLGGELYSGRLSLIMQHLQGLHTSISMLHQTLAGAQNDQQIDRQALHNQVRILHQRNE FT EHMPFIKKAIDEIQLLNATDQVANARELYLDTRATSAGDFDILRKYQSIHEFFPNIMSR FT ANKAGMEVIKSETSLSKAFALMNSAKSMSAIHTLIGEDVIEHVNGACLLKNDKTFFSIG FT CKQGVNGSKMYGPLCPTKQHVRIHRVESNMQIPLPTFHDATVWEFNEGYCYANQFAIMV FT GFVNEDEMEFYKNQMNQIVLNLGAWPTFEQYLIELRAISLDYPKVRGCPAAIHLVSHAS FT KLIHVLGQFGTINQGWHALEVATVGELVDLCHKKVEGEILTYKVGGIYDWVTKKNAFID FT LFEHHPENIFKICTSPSVLWLFARSCEKHDFINYIMARDHSLVGLFIKLEYVGKHLHIF FT QNVDDVCVEYAASMREIIEEHADIQGLQDSVVDRMVHAYHNEVREANKYELVDRILEKN FT IGLTAKEISSRKLITMYHQDLFSWHEWQRLKLMPHSLNAQKLFEEANERAYGKQSWNLR FT VVWGACKEVLYAVTRGVCVRVKGTTVRCADAVVYGFYGRTRAMVSSWASEAWGAIFTSC FT LRALVVMVVTAYISTWIPKIRKMIKREKKQFEELGGGELYVEQHGKREEAFLFKICAIF FT ALIAGIVDYEWGAAACATMNKVKSICTVLGSVGIESHANEPDDKVEQDLKESLKFTSFE FT IEVPKVVLSQDDMPFERWFQHQIQYGNVCADPIHSGPLRKLAITENSARELAMNIRTSG FT ETDLRVYSGVGGGKSTRLPKELSMFGHVLICVPTRVLAESLLTSFMVLFNMDVNVAYRG FT RIHTGNAPITIMTYGYAFNFLVHKPMELNRYDYVLLDEIHTNPVEFAPLFSFIKTTDPK FT KKIVKLSATHAGMDNECETRHKIKVETLSEMPIESWVSMQGSGVVGDATSVGDVILVFV FT ASFKDVDTCANGLRSKGFKVLKVDSRNFRRDADVDKQIQSLGEGKKFIVATNIIENGVT FT FNIDVVVDFGEKISPNLSSDERCIMLGRQRISRAE" FT mat_peptide 140..2413 FT /product="proteinase P1" FT mat_peptide 2414..3772 FT /product="helper component proteinase HC-Pro" FT mat_peptide 3773..4654 FT /product="P3 protein" FT mat_peptide 4655..4810 FT /product="6K1 protein" FT mat_peptide 4811..5866 FT /product="cytoplasmic inclusion protein CI" FT gap 5868..5967 FT /estimated_length=unknown FT CDS <5968..7473 FT /codon_start=1 FT /product="polyprotein" FT /note="coding region disrupted by sequencing gap" FT /db_xref="GOA:D2SLM6" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:D2SLM6" FT /protein_id="ABO92961.1" FT /translation="GNNSGQPSTVVDNTLILMIAMEYAIAKVFVTRPDIKYVCNGDDLL FT INCPRATASAISEHFKDAFADLSLNYDFDHVCDKITDVDFMSHSFMWLDAEQMYIPKLD FT KERIVAILEWERSDEQFRTGSALNAAYIGSFGYEDLMAEIEKFAHFWAKKHGLNDVLMD FT REKVRDLYVNEDFDASAFEKFYPETFSPFDVYVEPHASTSKTIEELQKEMEDLDADTTI FT TVVQRETQKARIRDQIETLRAQQIVRPTEAQLQPDVNPTQIVTFEPPRVTGVGALWIPR FT QQRNYMTTAYIEKIKAYVPHSNLIESGLASEAQLTSWIENTSRDYQVSMDVFMSAILPA FT WIVNCIINGTSQERTNEHTWRAVIMANMEDQEVLYYPIKPIIINAQPTLRQVMRHFGEQ FT AVAQYMNSLQVGKPFTVKGAVTAGYANVQDAWLGIDFLRDTMQLTTKQMEVKHQIIAAN FT VTRRKIRVFALAAPGDGDELDTERHVVDDVARGRHSLRGAQLD" FT mat_peptide 5968..6564 FT /product="nuclear inclusion body protein NIb" FT mat_peptide 6565..7470 FT /product="coat protein CP" FT 3'UTR 7474..7781 XX SQ Sequence 7781 BP; 2430 A; 1359 C; 1852 G; 2040 T; 100 other; taaataaaaa tgatatagag aaaatttgaa atacaagcac gaatttagca aacttattcg 60 caactcagtt ttactttaaa tactttattt caattttatc gaactgtggt gtccgctttg 120 aaacggatca gacgcggaaa tggggaaatc caaactcact tacaaacaat gcattgctaa 180 gtgggggaaa gccgcacttg aagcgcaaaa taacggatcg aaaagaagtg tttctgttgg 240 gactcaccaa attgcggcaa acatttttgc gttctatgac gcaaaagact accatctatt 300 tgccatgggc aaaagaggtg gattgactcc agcagctgac cagttaagga ttgcaattga 360 gcgaggaaca atttataagg tgcagtacaa ctgccactta tgccctgatt gtgatgaaat 420 tgtcgattct gacgaaggat ggtcttgcga ggattgcggc tcacaattca acaagtgcga 480 cgacaacatg cttgaaaaca agaatgacgc cgcacgcgct cttggtggat ggactgaata 540 cgaagacgcc acctgggcgt cgtttgaggc tgccaaagct gatatgcttg aagtagctcc 600 gactgttggt cagcttgaga aagaaatcag agccatagaa aaatcagctg gcaaaaaact 660 cactgcttat gaggaggaat tgcttgaaga gctggcctac aaacttgatg tggtcaagat 720 gaacgaggaa aagcaagaaa cagttttcga ggagactatt ttctctctat ccaacgatga 780 atttccggct cttaaaggtc cacaagatga agcaattaat gaagacattg agaagcatac 840 tgaggaatac gcgactgaag tcatgattga gatggaacag tttgcagaat ttgaatctac 900 acatgaggaa aatgatgaac cagttagaaa agctgttaat gcgcatgtag tcgcggcacc 960 tatcgtgatt cttagtgtga caaagtctgg gatggcaatc ggtaagaaaa agttgactga 1020 gaaaccaaat acaatcatgt gtgttacaaa gtcaaaaact cctactgcaa ttatcaccac 1080 gccatctaag tcggctgttt gggttgctaa gccaaagcta gcgtcggcga tttccatgta 1140 tgaaccagtt gtcaaatcga ctgtgagagc tagcagtgat gtgatcaata taggcgctat 1200 ggcgtgtcct atcatgatgt catcagttga atcacacagc caccaaaatg acaagctcga 1260 tgggacctta aacgcacaag ttgaaggagc aacgaaggag gacgagccag taatcaagta 1320 taatattact tttggctcat ttaactatga agtaagcacg aaaggggaac gagttcaagc 1380 tgctgtccaa cttgacgaga tgatagaagg acctgatact gaaccaattc tgataagcca 1440 aacaggaagt tcccataaat atgaaactaa gaaggcatca aaagggcttt ttgttcaaga 1500 tagattctcg gttattggga ataaggtact atgcaaatca tttccagcat tcaagaattt 1560 tatgaatgaa acaaggttgg gaggtattta cagaacaaga aaaggaaatt acaaaaacgc 1620 cgcattgcgt ttattgaagg ccactaaagt tcaagtattc tacgatggaa taaaggatgt 1680 ttttgaatgt tcttattgcc acatgagcag taatgaactg gagggtctta atggagacaa 1740 ttgtgaaaaa tgcaaagatc tattttataa acacattgat cccccgagaa aagttgagga 1800 ggaatatctt atgattcctc tcgtgcccat cgatcagcat gttcatgagg aacatagcat 1860 tattagtaag gctaagtggg aagcgcatga atccatctgt gaaggagaag tgaatattgt 1920 taagatcttt gatggaaagc cgactgcaag caagaagagc tttaaaacca agcaagcacc 1980 aaatgttgca aatataccgc ttgatgactt tatgcaggaa tttgttgaaa tttgtcttga 2040 gagaaacacc cctattgaaa tcattggggg tgtgaagtct tttaatgttg ttaagttaag 2100 acacactacg agagatatca gcaagtctgg tgaagatgat atgtatccaa ctgaaaggga 2160 atggttctgc cacaagaata aactatgtct gtgtggtgga attgatcgtg agaagaaaat 2220 cagaagctct gaggtgcgtc caggttggag tggagtaatt ttgcataaaa atcaagtggc 2280 ggagtgcgat tggaacaagt ttgttttcat tgatgatatg tgtgtggtgc aaggtagaaa 2340 cttaatcacg aataaggttg agaatgcact tgaaaagaaa ggggctaata gacttaaaca 2400 gatacaattt tatgcaaatt ctgttatacc aaatttcaag gacgaattcg acagagctag 2460 tcggctaaaa gctgatcacg aaccagatga gtcgtctaac aatgaactta ttggcaggct 2520 ggctaaactt gttgcagcag tcattccaaa aggccattta tactgcaaaa catgctgttt 2580 tagggttatc aagagtaagc gtgtagatgt agccaacgca ttaaataagg ccaagcagcg 2640 tggcgaacgg gatgagttta tttatgacga gctcattaaa ctttttgagc tacaagcacc 2700 accaccatat aagattgcaa cgatcactaa tgaagatgat atgttgcgca cattaggatt 2760 gggtggagaa ctatatagtg gacgactgag tctcataatg caacatctac aaggattgca 2820 cacgtcaata tcaatgctac accaaacgct tgcaggagcc cagaatgacc aacaaattga 2880 caggcaagcg ctccacaacc aagtgcgaat tttacatcaa agaaatgaag agcatatgcc 2940 tttcataaag aaagcaattg atgaaattca gctcttaaat gcaacagatc aagttgcaaa 3000 tgctcgggaa ttgtacttgg acactagggc aactagtgct ggagattttg acatattaag 3060 gaaatatcag agcatacatg agttctttcc caatattatg agccgggcca ataaagcagg 3120 gatggaagtt attaaatctg aaacatcatt gagcaaagct tttgccctaa tgaacagtgc 3180 taagtcgatg agcgctatcc atacgctcat aggggaagac gttatagaac atgtcaatgg 3240 agcttgcttg ctgaagaacg ataagacatt tttttcaatt ggttgcaagc agggtgttaa 3300 tggtagcaag atgtatggcc cgctttgtcc gaccaaacaa catgtaagaa tccaccgggt 3360 tgaatctaac atgcaaattc ctttgccaac atttcacgat gccaccgtct gggagtttaa 3420 cgaaggttac tgctacgcca atcaatttgc cataatggtt ggtttcgtca atgaggatga 3480 aatggagttt tataaaaatc aaatgaatca aattgtattg aacttagggg cttggccgac 3540 ttttgagcaa tacttaattg agctacgagc aatctcgctt gattatccaa aagttagggg 3600 gtgcccagct gctatccatt tagtttccca tgcaagcaaa cttattcatg ttttgggaca 3660 atttggaacg ataaaccaag ggtggcatgc gcttgaagta gcaactgtag gcgagcttgt 3720 cgacttgtgt cataagaaag ttgaaggtga gattttaact tataaagttg gtggcatata 3780 tgactgggtg actaagaaaa atgctttcat cgatttattt gaacaccacc cagaaaacat 3840 atttaaaatt tgcacatcgc catcagtgtt gtggttgttt gctcgcagct gcgagaaaca 3900 tgatttcatc aactacatca tggccagaga ccattcacta gtgggtctgt tcattaaatt 3960 ggagtatgtt ggtaagcatc ttcacatttt ccagaatgtt gatgatgttt gtgttgaata 4020 cgccgcgtct atgagggaaa tcattgaaga gcacgctgat attcaagggc tgcaggattc 4080 agtggtcgat agaatggttc acgcatatca taatgaagtg agagaagcaa ataaatatga 4140 gttagttgac agaattcttg aaaaaaacat tggattaaca gcaaaagaaa tttcatcgcg 4200 aaagctcatc acaatgtatc atcaagactt gttctcttgg cacgaatggc agcgtttgaa 4260 attaatgcca cactctttga atgcgcagaa acttttcgaa gaggcaaacg agcgcgcgta 4320 cgggaaacaa tcatggaatt tacgcgtggt ttggggtgcg tgcaaggaag tattatatgc 4380 agtcacacgc ggagtttgtg taagagtcaa aggaacaact gtgcgttgtg ccgacgccgt 4440 agtgtatggc ttctatggta gaacacgagc aatggtgtca agttgggcta gtgaggcctg 4500 gggagcaatt ttcacgtcgt gtctgagagc attagttgtt atggtggtca cggcatacat 4560 atcaacctgg attccaaaga ttaggaagat gattaaacgc gagaagaaac agtttgaaga 4620 gcttggaggt ggagagttgt atgtggagca acatggcaaa agagaggaag catttttatt 4680 caagatttgc gccatctttg cacttatagc aggtatagtt gactacgagt ggggagcagc 4740 tgcatgcgct acaatgaaca aagtcaagag tatatgcact gtacttgggt ctgttgggat 4800 tgagagtcac gccaacgagc ctgacgataa agttgagcag gacttaaagg aatcccttaa 4860 attcacatct tttgagattg aagtaccaaa agtcgtttta tcacaggatg atatgccttt 4920 tgaaaggtgg tttcaacatc aaatccaata tggcaatgtg tgtgcagacc ctatccatag 4980 tggtccacta cgcaagctag caattacaga gaattctgca agagagctag caatgaacat 5040 tcgcacatca ggagaaaccg acttgcgtgt ttatagtggg gttggtggag gaaaatcaac 5100 aaggttacct aaggaactta gcatgtttgg gcacgtacta atttgtgttc caacgagagt 5160 tttggcagaa agcttgttaa catcattcat ggtactattt aatatggatg ttaatgtggc 5220 ttatagagga agaatacata ctggtaacgc accaatcaca ataatgactt atggttatgc 5280 attcaacttc ttggtgcata aaccaatgga attaaaccga tatgattatg tgttactaga 5340 tgaaattcac accaatcctg ttgaattcgc acctttattt tctttcatca aaactacaga 5400 tccaaagaag aaaattgtta agctatcagc aactcatgct ggtatggaca acgagtgtga 5460 aaccaggcac aagattaagg tagaaactct aagcgaaatg ccaattgaaa gctgggtttc 5520 catgcaaggt tctggagttg ttggtgacgc gacatctgtt ggggatgtaa ttctagtctt 5580 tgttgcatca ttcaaggacg tcgatacatg tgctaacgga ttgcgatcta aaggcttcaa 5640 agttctaaag gttgatagta gaaatttcag gcgtgatgca gatgtggata agcaaatcca 5700 atcattgggt gaagggaaga agttcatagt tgctacaaac ataattgaaa atggtgtgac 5760 atttaacatt gatgttgtcg tcgattttgg cgagaaaatt agccctaatc tctcgagcga 5820 tgagcggtgt atcatgctag ggaggcagag aatatcgaga gcagagannn nnnnnnnnnn 5880 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 5940 nnnnnnnnnn nnnnnnnnnn nnnnnnnggt aataatagtg ggcagccctc aacggttgtt 6000 gataacacgt tgatcttgat gattgctatg gaatacgcga tagccaaggt ttttgttaca 6060 cgccctgaca tcaagtatgt ctgtaatggc gatgatctct tgatcaattg tccaagggcc 6120 actgcaagcg ccattagtga acatttcaaa gatgcatttg cagatttaag cttgaactat 6180 gattttgatc atgtgtgtga caaaatcaca gatgttgatt tcatgagtca tagcttcatg 6240 tggctagatg ccgagcagat gtatatacca aagttggaca aggagcggat tgtggcaatt 6300 ttggagtggg agaggagtga tgagcaattc agaacgggga gcgccctgaa tgctgcctat 6360 attgggagtt ttgggtatga agatttgatg gctgaaattg aaaaattcgc tcacttttgg 6420 gcaaaaaagc atggtcttaa tgacgtcttg atggatcgag agaaggttag agacttgtac 6480 gttaatgaag actttgatgc gtcagccttt gagaagttct atccggaaac attttcgcca 6540 tttgatgttt atgttgaacc acatgcatca acgtccaaga caatcgaaga actgcagaaa 6600 gaaatggagg atttggatgc agacacaaca attactgtgg ttcagaggga aacacagaag 6660 gcaaggataa gagaccaaat tgagacactt agggcacaac agattgtgag acctactgaa 6720 gcacagctac agcctgacgt aaatcccacg caaatagtca cgtttgaacc accgagagtc 6780 actggagttg gcgctttatg gattccgcgc caacaaagga actacatgac aacagcttac 6840 attgagaaga ttaaggctta tgttccacat tcaaacttga tagaatctgg attagctagt 6900 gaagctcaat tgactagttg gatcgaaaac acgagcaggg actaccaagt tagtatggat 6960 gtcttcatga gtgcaatttt gccagcatgg attgtcaatt gcataatcaa tggaacatct 7020 caggagcgca ctaatgagca cacatggaga gctgtaatca tggcgaatat ggaagaccaa 7080 gaagtgcttt attaccccat caagcccata ataatcaatg ctcagccaac tttgaggcaa 7140 gtgatgcgcc atttcggaga acaagccgtc gctcaataca tgaacagcct tcaagttgga 7200 aagcctttta cagtgaaagg tgccgtgact gctggttacg ctaacgttca agatgcttgg 7260 ctaggtattg actttcttcg ggacacaatg cagttgacga caaaacagat ggaagttaag 7320 catcaaatta tcgcagcgaa cgttacaagg cggaaaatcc gtgttttcgc tcttgcagca 7380 ccgggggatg gcgatgaact agacacagaa aggcacgtcg tcgacgatgt ggctaggggc 7440 cgtcatagtc tgagaggagc tcaactcgat taaatgagca cgttatcttt aatttcagct 7500 gcgtgttttt atcttaatta tgtgttgtgc tttgtgtctg tttgttgtgg cacttgaacc 7560 aggtacagct ggcaggtgtt tcggcatggt gtggttagac aattggttcg caccggtggt 7620 ctaagaagcg ctatgtatca cgtggttggt taattcataa tttgtatgga tcaatcaaga 7680 agcgtctatg gcccaaaagg gcaccagaaa atggttacgt cattcgtggc gtaatcagtt 7740 tttggagttt ggctaggtaa cttgtcgcct atccaaaagc c 7781 //