ID   DQ988099; SV 1; linear; genomic RNA; STD; VRL; 1363 BP.
XX
AC   DQ988099;
XX
DT   10-JAN-2007 (Rel. 90, Created)
DT   15-JUN-2007 (Rel. 92, Last updated, Version 3)
XX
DE   Cereal yellow dwarf virus - RPV isolate RPV11P1b03 replicase and coat
DE   protein genes, partial cds; and 17k protein gene, complete cds.
XX
KW   .
XX
OS   Cereal yellow dwarf virus RPV
OC   Viruses; Riboviria; Luteoviridae; Polerovirus.
XX
RN   [1]
RP   1-1363
RX   DOI; 10.1007/s00705-006-0913-x.
RX   PUBMED; 17216137.
RA   Robertson N.L., French R.;
RT   "Genetic structure in natural populations of barley/cereal yellow dwarf
RT   virus isolates from Alaska";
RL   Arch. Virol. 152(5):891-902(2007).
XX
RN   [2]
RP   1-1363
RA   Robertson N.L., French R.;
RT   ;
RL   Submitted (07-SEP-2006) to the INSDC.
RL   Subarctic Agricultural Research Unit, Arctic Plant Germplasm, United States
RL   Department of Agriculture, Agricultural Research Service, 533 E. Fireweed
RL   Avenue, Palmer, AK 99645, USA
XX
DR   MD5; b51dd40406845c34d53ef13a57de0a73.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1363
FT                   /organism="Cereal yellow dwarf virus RPV"
FT                   /host="Horeeum vulgare L. (barley)"
FT                   /isolate="RPV11P1b03"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /collection_date="2003"
FT                   /db_xref="taxon:2170100"
FT   CDS             <1..571
FT                   /codon_start=2
FT                   /product="replicase"
FT                   /note="ORF2"
FT                   /db_xref="GOA:A1YH34"
FT                   /db_xref="InterPro:IPR001795"
FT                   /db_xref="UniProtKB/TrEMBL:A1YH34"
FT                   /protein_id="ABL67579.1"
FT                   /translation="FDWMLADDMEVRNRLTIDCNELTRHLRAVWLQGISNSVLCLSDGT
FT                   MLAQRVPGVQKSGSYNTSSTNSRVRVMAAYHCGASWAIAMGDDALEAPDTDLSKYKDLG
FT                   FKVEVSGELEFCSHIFKTPNLAIPVNENKMLYRLIHGYNPECGNFEVVQNYLNAAVSVL
FT                   HELRHDRELCLKLQEWLISDVTTKLN"
FT   CDS             757..>1363
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="ORF3"
FT                   /db_xref="GOA:A1YH35"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:A1YH35"
FT                   /protein_id="ABL67577.1"
FT                   /translation="MSTVVLRSNGNGSRRRRQRVARRRPAARTQPVVVVTSNGSARRGR
FT                   RRRPVGPRRGRTPRSGGGSRGETFVFSKDSLAGNSSGSITFGPSLSEYPAFQNGVLKAY
FT                   HEYKITNCVLQFVSEASSTAAGSISYELDPHCKASSLASTINKFTITKTGARSFPAKMI
FT                   NGLEWHPSDEDQFRILYKGNGASSVAGSFKITLRVQLQN"
FT   CDS             782..1243
FT                   /codon_start=1
FT                   /product="17k protein"
FT                   /note="ORF4"
FT                   /db_xref="InterPro:IPR001964"
FT                   /db_xref="UniProtKB/TrEMBL:A1YH24"
FT                   /protein_id="ABL67578.1"
FT                   /translation="MAMVRADADRESLGEGLLQERSQWLWSLPTAQPGVEDADDQLVLG
FT                   EEELQDLEEEAVARHSFSQRIHSRATPLEVSPSGRLYQSIRHSRMEYSRPTMNIRSQIV
FT                   SYSSSARPLPQQPAPSLMSWTPIAKHLHSHQRSISSQSPKLVRGASQRR"
XX
SQ   Sequence 1363 BP; 351 A; 338 C; 334 G; 340 T; 0 other;
     gttcgattgg atgctcgcgg atgacatgga ggtgagaaat cgcctaacaa tcgactgcaa        60
     cgagctcacc agacacctta gggctgtttg gcttcaaggc atatcaaact cggttttgtg       120
     cctgtcggat ggaaccatgt tagctcaacg agtacccggc gtgcagaaaa gtggttcgta       180
     caacacttcg tccacaaact cacgcgtccg ggtcatggct gcctatcatt gtggcgcctc       240
     gtgggctatc gctatgggtg atgatgccct ggaagctcca gatacagact tgtcaaaata       300
     taaagatctg ggcttcaaag tcgaggttag cggagagttg gaattctgtt cgcacatttt       360
     caagacccct aacctcgcca ttccggttaa tgaaaacaaa atgttgtacc gcttgatcca       420
     cgggtacaat ccggaatgtg gcaattttga ggtggttcaa aactatctca atgcagctgt       480
     ctcagtgctg catgagctcc gacatgatcg ggagctttgc ctaaaacttc aagagtggtt       540
     gatttctgac gtcaccacaa aactaaactg agcacaaaac tagccggaca aacgtaagtt       600
     gcaagtgccg gaagtcaagt cttacacata agcccaacat tgattttcat ttgttagcgg       660
     gatttgccct tggatttata tcctcaatcc ccatttcagt tgttggtgtt tatctagtct       720
     accttaaggt ttcgacccac attcgtgaaa ttgttaatga gtacggtcgt ccttagatcc       780
     aatggcaatg gttcgcgcag acgcagacag agagtcgctc ggcgaaggcc tgctgcaaga       840
     acgcagccag tggttgtggt cacttccaac ggctcagcca ggcgtggaag acgccgacga       900
     ccagttggtc ctcggcgagg aagaactcca agatctggag gaggaagccg tggcgagaca       960
     ttcgttttct caaaggattc actcgcgggc aactcctctg gaagtatcac cttcgggccg      1020
     tctctatcag agtatccggc attccagaat ggagtactca aggcctacca tgaatataag      1080
     atcacaaatt gtgtcttaca gttcgtcagc gaggcctctt ccacagcagc cggctccatc      1140
     tcttatgagt tggaccccca ttgcaaagca tcttcactcg catcaacgat caataagttc      1200
     acaatcacca aaactggtgc gcggagcttc ccagcgaaga tgatcaacgg gttagagtgg      1260
     cacccctcag atgaggatca gttccgaatt ctttacaaag ggaacggtgc ttcttctgtg      1320
     gctgggtctt ttaagatcac tcttagagtc cagctacaaa acc                        1363
//