ID   DQ988088; SV 1; linear; genomic RNA; STD; VRL; 1331 BP.
XX
AC   DQ988088;
XX
DT   10-JAN-2007 (Rel. 90, Created)
DT   15-JUN-2007 (Rel. 92, Last updated, Version 3)
XX
DE   Cereal yellow dwarf virus - RPV isolate RPV05P4b02 replicase and coat
DE   protein genes, partial cds; and 17k protein-like gene, complete sequence.
XX
KW   .
XX
OS   Cereal yellow dwarf virus RPV
OC   Viruses; Riboviria; Luteoviridae; Polerovirus.
XX
RN   [1]
RP   1-1331
RX   DOI; 10.1007/s00705-006-0913-x.
RX   PUBMED; 17216137.
RA   Robertson N.L., French R.;
RT   "Genetic structure in natural populations of barley/cereal yellow dwarf
RT   virus isolates from Alaska";
RL   Arch. Virol. 152(5):891-902(2007).
XX
RN   [2]
RP   1-1331
RA   Robertson N.L., French R.;
RT   ;
RL   Submitted (07-SEP-2006) to the INSDC.
RL   Subarctic Agricultural Research Unit, Arctic Plant Germplasm, United States
RL   Department of Agriculture, Agricultural Research Service, 533 E. Fireweed
RL   Avenue, Palmer, AK 99645, USA
XX
DR   MD5; e07e3fa8e9db6581645bbef3a23cfe0c.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1331
FT                   /organism="Cereal yellow dwarf virus RPV"
FT                   /host="Hordeum vulgare L. (barley)"
FT                   /isolate="RPV05P4b02"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /collection_date="2002"
FT                   /db_xref="taxon:2170100"
FT   CDS             <1..539
FT                   /codon_start=3
FT                   /product="replicase"
FT                   /note="ORF2"
FT                   /db_xref="GOA:A1YH03"
FT                   /db_xref="InterPro:IPR001795"
FT                   /db_xref="UniProtKB/TrEMBL:A1YH03"
FT                   /protein_id="ABL67547.1"
FT                   /translation="RNRLTIDCNELTRHLRAVWLQGISNSVLCLSDGTMLAQRVPGVQK
FT                   SGSYNTSSTNSRVRVMAAYHCGASWAIAMGDDALEAPDTDLSKYKDLGFKVEVSGELEF
FT                   CSHIFKTPNLAIPVNENKMLYRLIHGYNPECGNFEVVQNYLNAAVSVLHEPRHDRELCL
FT                   KLQEWLISDVTTKLN"
FT   CDS             725..>1331
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="ORF3"
FT                   /db_xref="GOA:A1YH04"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:A1YH04"
FT                   /protein_id="ABL67546.1"
FT                   /translation="MSTVVLRSNGNGSRRRRQRVARRRPAARTQPVVVVTSNGTARRGR
FT                   RRRPVGPRRGRTPRSGGGSRGETLVFSKDSLAGNSSGSITFGPSLSEYPAFQNGVLKAY
FT                   HEYKITNCVLQFVSEASSTAAGSISYELDPHCKASSLASTINKFTITKTGARSFPAKMI
FT                   NGLEWHPSDEDQFRILYKGNGASSVAGSFKITLRVQLQN"
FT   misc_feature    750..1211
FT                   /note="similar to 17k protein; ORF4"
XX
SQ   Sequence 1331 BP; 350 A; 341 C; 316 G; 324 T; 0 other;
     tgagaaatcg cctaacaatc gactgcaacg agctcaccag acaccttagg gctgtttggc        60
     ttcaaggcat atcaaactcg gttttatgcc tgtcggatgg aaccatgtta gctcaacgag       120
     tacccggcgt gcagaaaagt ggctcgtaca acacttcgtc cacaaactca cgcgtccggg       180
     tcatggctgc ctatcactgt ggcgcctcgt gggctatcgc tatgggtgat gatgccctgg       240
     aagctccaga tacagacttg tcaaaatata aagatctggg cttcaaagtc gaggttagcg       300
     gagagttgga attctgttcg cacattttca agacccctaa cctcgccatt ccggttaatg       360
     aaaacaaaat gttgtaccgc ttgatccacg ggtacaatcc ggaatgtggc aattttgagg       420
     tggttcaaaa ctatctcaat gcagctgtct cagtgctgca tgagccccga catgatcggg       480
     agctttgcct aaaacttcaa gagtggttga tttctgacgt caccacaaaa ctaaactgag       540
     cacaaaacta gccggacaaa cgtaagttgc aagtgccgga agtcaagtct tacacataag       600
     cccaacattg attttcattt gttagcggga tttgcccttg gatttatatc ctcaatcccc       660
     atttcagttg ttggtgttta tctagtctac cttaaggttt cgacccacat tcgtgaaatt       720
     gttaatgagt acggtcgtcc ttagatccaa tggcaatggt tcgcgcagac gcagacagag       780
     agtcgctcgg cgaaggcctg ctgcaagaac gcagccagtg gttgtggtca cttccaacgg       840
     cacagccagg cgcggaagac gccgacgacc agtaggtcct cggcgaggaa gaactccaag       900
     atctggagga ggaagccgtg gcgagacact cgttttctca aaggattcac tcgcgggcaa       960
     ctcctctgga agtatcacct tcgggccgtc tctatcagag tatccggcat tccagaatgg      1020
     agtactcaag gcctaccatg aatataagat cacaaattgt gtcttacagt tcgtcagcga      1080
     ggcctcttcc acagcagccg gctccatctc ttatgagttg gacccccatt gcaaagcatc      1140
     ttcactcgca tcaacgatca ataagttcac aatcaccaaa actggtgcgc ggagcttccc      1200
     agcgaagatg atcaacgggt tagagtggca cccttcagac gaagatcaat tccgtatcct      1260
     ctataaaggg aacggtgcct cttccgtagc tggttctttc aagattacac ttcgtgtaca      1320
     gctacaaaac c                                                           1331
//