ID   DQ925453; SV 1; linear; genomic RNA; STD; VRL; 2050 BP.
XX
AC   DQ925453;
XX
DT   30-JUN-2007 (Rel. 92, Created)
DT   06-MAR-2008 (Rel. 95, Last updated, Version 2)
XX
DE   Leek yellow stripe virus isolate LYSV-VN/L3 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Leek yellow stripe virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-2050
RX   DOI; 10.1007/s00705-007-1067-1.
RX   PUBMED; 17906829.
RA   Ha C., Revill P., Harding R.M., Vu M., Dale J.L.;
RT   "Identification and sequence analysis of potyviruses infecting crops in
RT   Vietnam";
RL   Arch. Virol. 153(1):45-60(2008).
XX
RN   [2]
RP   1-2050
RA   Ha C.V., Coombs S., Revill P.A., Harding R.M., Vu M.T., Dale J.L.;
RT   ;
RL   Submitted (29-AUG-2006) to the INSDC.
RL   Institute of Health and Biomedical Innovation, Queensland University of
RL   Technology, 2 George Street, Brisbane, Queensland 4001, Australia
XX
DR   MD5; 563e52cd537f247ce3df90a0423de585.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2050
FT                   /organism="Leek yellow stripe virus"
FT                   /host="Leek (Allium porrum)"
FT                   /isolate="LYSV-VN/L3"
FT                   /mol_type="genomic RNA"
FT                   /country="Viet Nam:Hanoi"
FT                   /isolation_source="infected plant"
FT                   /collection_date="2004"
FT                   /note="sample 1282"
FT                   /db_xref="taxon:42004"
FT   CDS             <1..1456
FT                   /codon_start=2
FT                   /product="polyprotein"
FT                   /db_xref="GOA:A6XP55"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:A6XP55"
FT                   /protein_id="ABL09428.1"
FT                   /translation="DNSLMVVFSMYYAMEMSNIEDIHDKCVFFVNGDDLIIAVEPGSEA
FT                   FLDSLQNLFQQLGLNYNFDSRTRDKEKLCFMSHMGILQDGIYIPKLDKERIVSILEWDR
FT                   AQQPEHRLEAICAAMIEAWGYPDLLDRIRKFYCWILEQAPYNELGTLGKAPFISEMALR
FT                   NLYTDCKATELELARYLELYDGGELTEDIFEYQAGDEMDAGVQASKSQKSSADKFMGRR
FT                   DPSTSQVSAHGRDNDANSDLSSHKDRDVNVGTTGTFSVPRIKQISRKGLSVPMEKGKSI
FT                   LNLDHLLQYKPSQLCISNTRATRAQFTTWKSRLQEEYGVTNDEMSIILNGLMVWCIENG
FT                   TSPNINGVWTMMDGEEQVEFPLRPVVEHAQPTLRQIMAHFSALAEAYIEMRNAEQAYMP
FT                   RYGLQRNLTDMSLARYAFDFYEVTSRTPVRAREAHAQMKAAALRNSRPRLFGLDGNVTT
FT                   MDEDTERHTAHDVNARMHHLDGAHMQ"
FT   mat_peptide     <1..589
FT                   /product="NIb"
FT   mat_peptide     590..1453
FT                   /product="CP"
FT   3'UTR           1457..2050
XX
SQ   Sequence 2050 BP; 631 A; 393 C; 486 G; 540 T; 0 other;
     tgacaattca ctgatggttg tcttctctat gtactatgct atggaaatga gcaacattga        60
     agacattcat gataaatgtg tattcttcgt taatggtgat gatttgataa tcgcagtgga       120
     acctgggtcc gaagctttct tagacagcct acaaaattta ttccaacaac ttggcctgaa       180
     ttacaacttc gacagtcgaa cacgtgataa agaaaaattg tgcttcatgt cgcacatggg       240
     aattctacaa gatggcattt acataccgaa gctggataaa gagcgaatag tgtcaatact       300
     tgagtgggat cgtgcccagc agcctgagca taggttggag gccatatgtg cagcgatgat       360
     tgaagcctgg ggttatccag accttctaga tcgaattcgg aaattttatt gttggatcct       420
     agaacaagca ccatataatg agctcggtac attaggaaag gcaccattca tctctgagat       480
     ggcactacgc aatctataca cagattgtaa agccacggag ttagaattag caaggtatct       540
     tgaactctac gatggtggcg agcttacaga agatatattt gaatatcaag ctggtgatga       600
     gatggatgca ggtgtgcaag ctagtaagag ccaaaagagt agtgcagata agtttatggg       660
     gcgacgagac ccttcaacat cacaagtcag tgcacatggg agagacaatg acgcaaattc       720
     agatttaagc tcacataaag atagagatgt aaacgttggt accacaggaa cctttagtgt       780
     accaaggata aaacaaattt cacggaaggg attatcagtt ccgatggaaa aaggaaagtc       840
     aatacttaat ttggatcacc tcctacagta caaacccagc cagttgtgta tatcaaacac       900
     tagagctacc agagcgcagt tcacaacttg gaaatcaaga ctgcaggagg aatatggtgt       960
     cactaatgat gaaatgagta ttatcttaaa tggtttaatg gtgtggtgca ttgaaaatgg      1020
     aacctcacca aacataaatg gagtctggac aatgatggac ggcgaagagc aggttgaatt      1080
     tcctttgcga cctgttgttg aacatgcaca accaactctg cggcaaataa tggcacattt      1140
     ctcagcactc gctgaggcgt acattgagat gaggaacgca gagcaggcat atatgccgag      1200
     gtatggatta cagaggaacc ttacagacat gagtctcgca cggtatgcat ttgactttta      1260
     tgaagtcaca tcaagaacac cagttagagc gcgcgaggcc catgcacaaa tgaaagcagc      1320
     agccttgagg aattcaaggc caagattgtt tggattagac ggtaacgtca caacgatgga      1380
     tgaggacacg gagaggcaca cagcacatga cgtgaacgca cggatgcacc atcttgatgg      1440
     tgcacatatg cagtgatgtt tcggttgaca accggttatg gacttccact taaaaagtcc      1500
     cgagtgccaa acttgtattt tggctagtgt agtggaacta tgattcactc gttcaaggca      1560
     gtttctactt taaggatgac ttgagaatta gtagctctca atgccggcca cattggtggt      1620
     caccaagatc caacacttgg tttgaagctg atcatctgaa gatctatccc ggttacggtt      1680
     atgtaaagaa ggtgaattca attgtcaagg attgtaagtc tgaagccttt atggtgtata      1740
     agcagcctga attttgatac ctcaccttta ccctacgacg gagtgctact ttaaagacta      1800
     gctaggattg agaccgaatt ctcacgtgct ggcatggcca gcggctgatc acctaacgat      1860
     tagttgacca ctttatagtc aatttggaaa cccgtagtat cctatcctta cctaatatcg      1920
     taagttttat ttactggtgt agtgtggtac aaccacctta taaacacttt gaatattagg      1980
     atcgagctgt tcatatgaag gcactaagag tggttgacca tgtgtgtgtt cttatgttgc      2040
     agtaagagac                                                             2050
//