ID   DQ925452; SV 1; linear; genomic RNA; STD; VRL; 2055 BP.
XX
AC   DQ925452;
XX
DT   30-JUN-2007 (Rel. 92, Created)
DT   06-MAR-2008 (Rel. 95, Last updated, Version 2)
XX
DE   Leek yellow stripe virus isolate LYSV-VN/L2 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Leek yellow stripe virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-2055
RX   DOI; 10.1007/s00705-007-1067-1.
RX   PUBMED; 17906829.
RA   Ha C., Revill P., Harding R.M., Vu M., Dale J.L.;
RT   "Identification and sequence analysis of potyviruses infecting crops in
RT   Vietnam";
RL   Arch. Virol. 153(1):45-60(2008).
XX
RN   [2]
RP   1-2055
RA   Ha C.V., Coombs S., Revill P.A., Harding R.M., Vu M.T., Dale J.L.;
RT   ;
RL   Submitted (29-AUG-2006) to the INSDC.
RL   Institute of Health and Biomedical Innovation, Queensland University of
RL   Technology, 2 George Street, Brisbane, Queensland 4001, Australia
XX
DR   MD5; 415608087a76368dbb31581fe11c9939.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2055
FT                   /organism="Leek yellow stripe virus"
FT                   /host="Leek (Allium porrum)"
FT                   /isolate="LYSV-VN/L2"
FT                   /mol_type="genomic RNA"
FT                   /country="Viet Nam:Sonla"
FT                   /isolation_source="infected plant"
FT                   /collection_date="2004"
FT                   /note="sample 1264"
FT                   /db_xref="taxon:42004"
FT   CDS             <1..1456
FT                   /codon_start=2
FT                   /product="polyprotein"
FT                   /db_xref="GOA:A6XP54"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:A6XP54"
FT                   /protein_id="ABL09427.1"
FT                   /translation="DNSLMVVFSMYYAMEMSNIEDIHDKCVFFVNGDDLIIAVEPRSES
FT                   FLDSLQNLFQQLGLNYNFDSRTRDKEKLCFMSHVGILQDGIYIPKLDKERIVSILEWDR
FT                   AQQPEHRLEAICAAMIEAWGYPDLLDRIRKFYCWILEQAPYNELSTLGKAPFVSEMALR
FT                   NLYTDCKATELELARYLELYDGGELTEELFEYQAGDEIDAGVQASKSQKSSTDKFIGQR
FT                   DSSTSQVSAHGGDNGANSDVSSHKDRDVNVGTTGTFSVPRIKQISRKGLSVPMEKGKSI
FT                   LNLDHLLQYKPSQLCISNTRATRAQFTTWKSRLQEEYSVTNDEMSIILNGLMVWCIENG
FT                   TSPNINGVWTMMDGEEQVEFPLRPVVEHAQPTLRQIMAHFSALAESYIEMRNAEQAYMP
FT                   RYGLQRNLTDMSLARYAFDFYEATSRTPVRAREAHAQMKAAALRNSKPRLFGLDGNVTT
FT                   MDEDTERHTAHDVNARMHHLDGAHMQ"
FT   mat_peptide     <1..589
FT                   /product="NIb"
FT   mat_peptide     590..1453
FT                   /product="CP"
FT   3'UTR           1457..2055
XX
SQ   Sequence 2055 BP; 632 A; 393 C; 489 G; 541 T; 0 other;
     tgacaattca ctgatggttg tcttctctat gtactatgct atggaaatga gcaacattga        60
     agacattcat gataaatgtg tattctttgt taatggtgat gatttgataa tcgcagtgga       120
     acctaggtcc gaaagtttct tagacagctt acaaaattta ttccagcaac ttggcctgaa       180
     ttacaacttc gatagtcgaa cacgtgataa agaaaaattg tgcttcatgt cgcacgtggg       240
     aattctacaa gatggcattt acataccgaa actggataaa gagcgaatag tgtcaatact       300
     tgagtgggat cgtgcccagc agcctgagca taggttggag gccatatgtg cagcgatgat       360
     tgaggcttgg ggttatccag accttctgga tcgaattcgg aaattttatt gttggatcct       420
     agaacaagca ccgtacaatg agcttagcac attaggaaaa gcaccattcg tctctgagat       480
     ggcactacgc aatctataca cagattgtaa ggccacggag ttagaattag caaggtatct       540
     tgaactctac gacggtggcg agcttacaga agaactattt gagtatcaag ctggtgatga       600
     gatagatgca ggtgtgcaag ctagtaagag ccagaagagt agtacagata agtttatagg       660
     gcaacgagat tcttcaacat cacaagttag tgcacatggg ggagacaatg gtgcaaattc       720
     agatgtaagc tcacataaag atagagatgt aaacgttggt accacgggaa ccttcagtgt       780
     accaaggata aaacaaattt cacggaaggg attatcagtt ccaatggaaa aaggaaagtc       840
     aatactcaat ttagatcacc tcctacagta caaacccagc caattgtgta tatcaaacac       900
     tagagctact agagcgcagt tcacaacttg gaagtcaaga ttgcaggagg aatatagtgt       960
     caccaatgat gagatgagca ttatcttaaa tggcttaatg gtgtggtgca ttgaaaatgg      1020
     gacctcacca aacataaatg gagtctggac aatgatggac ggtgaagagc aggtcgaatt      1080
     tcctttgcga cctgttgttg aacatgcaca accaacctta cggcaaataa tggcacactt      1140
     ctcagcactt gcagaatcgt atatcgagat gaggaatgca gagcaggcat atatgccaag      1200
     gtatggatta cagaggaacc ttacagacat gagtctcgcc cggtatgctt ttgactttta      1260
     tgaagccaca tcaagaactc cagttagggc gcgcgaggcc catgcacaga tgaaagcagc      1320
     agctttgagg aattcgaagc caagactgtt tggattggac ggcaacgtca caactatgga      1380
     tgaggacacg gagagacata cagcacatga cgtgaacgca cggatgcacc atcttgatgg      1440
     tgcgcatatg cagtgatgtt tcggttgata accggttatg gacttccatt taaaaagtcc      1500
     caagtgccaa acttgtattg tttttggcta gtgtagtgaa gctataattc actcgttcaa      1560
     ggcagtttct actttaagga tgacttgaga gttaatagtt ctcaatgcca gtcacaatgg      1620
     tgactaccaa gagccaacac ttggtttgaa gctgatcatc tgaagatcta tcccggttac      1680
     ggttaagtaa agaaggtgaa ctcaattgtt aaggatagta agtctgaagc ctttatggtg      1740
     tatacgcagc ctgaattttg atacctcacc cttaccctac gacggagtgc tactttaaag      1800
     actagctagg attgaggccg aattctcacg tgctggcatg gccagcggct gatcgcctaa      1860
     cgattagttg actacttaac agtcaatttg gaaacccgta gtatcctatc cttacctaat      1920
     atcgtaagtc ttatttactg gtgtagcgtg gtacaaccac cttataaaca cttcgaatat      1980
     taggatcgag ctgttcatat gaaggcacta agagtggctg accatgtgtg tgttcttatg      2040
     ttgcagtaag agacg                                                       2055
//