ID   DQ875870; SV 1; linear; genomic DNA; STD; VRL; 2569 BP.
XX
AC   DQ875870;
XX
DT   26-SEP-2006 (Rel. 89, Created)
DT   01-AUG-2007 (Rel. 92, Last updated, Version 2)
XX
DE   Desmodium leaf distortion virus segment DNA-A, complete sequence.
XX
KW   .
XX
OS   Desmodium leaf distortion virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2569
RX   DOI; 10.1007/s11262-007-0080-5.
RX   PUBMED; 17638064.
RA   Hernandez-Zepeda C., Idris A.M., Carnevali G., Brown J.K.,
RA   Moreno-Valenzuela O.A.;
RT   "Molecular characterization and phylogenetic relationships of two new
RT   bipartite begomovirus infecting malvaceous plants in Yucatan, Mexico";
RL   Virus Genes 35(2):369-377(2007).
XX
RN   [2]
RP   1-2569
RA   Hernandez-Zepeda C., Moreno-Valenzuela O.A., Brown J.K.;
RT   ;
RL   Submitted (01-AUG-2006) to the INSDC.
RL   Unidad de Bioquimica y Biologia Molecular de Plantas, Centro de
RL   Investigacion Cientifica de Yucatan (CICY), Calle 43 No. 130, Merida,
RL   Yucatan 97200, Mexico
XX
DR   MD5; cd20ddfa7789e8aafd95b6ef73956e5a.
DR   EuropePMC; PMC3081322; 21544196.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2569
FT                   /organism="Desmodium leaf distortion virus"
FT                   /segment="DNA-A"
FT                   /host="Desmodium glabrum"
FT                   /mol_type="genomic DNA"
FT                   /country="Mexico:Yucatan"
FT                   /db_xref="taxon:361731"
FT   gene            151..906
FT                   /gene="AV1"
FT   CDS             151..906
FT                   /codon_start=1
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q06HQ0"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:Q06HQ0"
FT                   /protein_id="ABI85401.1"
FT                   /translation="MPKRDAPWRSMAGTSKVSRAANYSPRAGNGPKLNRASEWVNRPMY
FT                   RKPRIYRTLRSPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRF
FT                   CVKSVYILGKVWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV
FT                   KNDLRDRYRVMHKFYAKVTGGQYASNEQAIVKRFWRINTHVVYNHQEAAKYENHTENAL
FT                   LLYMACTHASNLVYATLKIRIYFYDSIMN"
FT   gene            complement(903..1301)
FT                   /gene="AC3"
FT   CDS             complement(903..1301)
FT                   /codon_start=1
FT                   /gene="AC3"
FT                   /product="replication enhancer protein"
FT                   /note="REn"
FT                   /db_xref="GOA:Q06HP9"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:Q06HP9"
FT                   /protein_id="ABI85404.1"
FT                   /translation="MDSRTGEIITAHQAENGVYIWEIENPLYFKMCKVEDPLYTNTRIY
FT                   TVQIRFNHNLRRALHLHKAYLNFQVWTTWTTASGLTYLTRFRQLVNMYLDQLGIIGLNN
FT                   VIRAVRFATARSYVHDVLENHEIKFKFY"
FT   gene            complement(1048..1437)
FT                   /gene="AC2"
FT   CDS             complement(1048..1437)
FT                   /codon_start=1
FT                   /gene="AC2"
FT                   /product="transactivator protein"
FT                   /note="TrAP"
FT                   /db_xref="GOA:Q06HP8"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:Q06HP8"
FT                   /protein_id="ABI85403.1"
FT                   /translation="MRSSSPSHPPSIKKAHRQAKKRAVRRRRIDLDCGCSIYFHIDCTG
FT                   HGFTHRGNHHCTSGREWRVYLGDRKSPLFQDVQSRGPLVHQHQDIHRTNTVQPQPEESV
FT                   ASPQSLPELPSLDDLDDSFWVDLFN"
FT   gene            complement(1349..2428)
FT                   /gene="AC1"
FT   CDS             complement(1349..2428)
FT                   /codon_start=1
FT                   /gene="AC1"
FT                   /product="REP protein"
FT                   /db_xref="GOA:Q06HP7"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:Q06HP7"
FT                   /protein_id="ABI85402.1"
FT                   /translation="MPLKPKTFRLAARNIFLTYPQCDIPKDEALQMLQNLSWSVVKPVY
FT                   IRVAREEHSDGFPHLHCLLQLSGKSNIKDARFFDLTHPRRSANFHPNVQAAKDSNAVRN
FT                   YITKEGDYCESGQYKVPGGTKANKDDVFHNAVNAPGVAEALDIIRAGDPRTFIVSYHNI
FT                   KANIERLFAKPPEPWTPPYRLSSFTNVPDEMQEWADDYFGRSSAARPERPISIIVEGES
FT                   RTGKTMWARSLGPHNYLSGHLDFNNRVYSNEVEYNVIDDVAPQYLKLKHWKELIGAQKN
FT                   WQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLDKAENASLRNWTLKNAIFITLTSA
FT                   LYQEGPQASQEEGGQTTPD"
XX
SQ   Sequence 2569 BP; 635 A; 553 C; 632 G; 749 T; 0 other;
     actggatggc cgcgcgattt tggtgtcttt actttttctg gtccaatgaa attgcgcctg        60
     gcgagcctag atatttgaaa caacttagtg cgcaagttgt gagcgtcttt ataaattaaa       120
     gacatatagg gccaccttct ttagttcaaa atgcctaagc gcgatgcccc gtggcgctct       180
     atggctggga cctcaaaggt tagtcgggct gctaactatt ctcctcgtgc aggtaatggc       240
     ccaaagttga acagggcctc agaatgggtt aacaggccca tgtataggaa gcccaggatc       300
     taccggactt tgaggtcccc tgatgtgccc agaggctgtg aaggtccttg taaggtccag       360
     tcctatgaac agcgccacga catatcacac gtcgggaagg tcatgtgcat atctgatgtg       420
     acacgtggta atggcattac ccaccgtgtg ggtaagcgtt tttgtgttaa gtctgtgtat       480
     attctaggta aggtctggat ggatgagaac atcaagttga agaatcacac gaacagtgtg       540
     atgttctggt tagtcaggga ccgtagaccc tacggtactc caatggattt cgggcaggtg       600
     ttcaacatgt tcgataacga gcctagcact gccactgtta agaacgatct ccgtgatcgt       660
     taccgggtga tgcacaagtt ctatgccaag gtgacaggtg gacagtacgc cagcaatgaa       720
     caggcgatag tcaagaggtt ctggaggatc aacactcatg tggtctataa tcatcaggag       780
     gctgccaagt atgagaatca tacggagaac gccctattat tgtatatggc atgtactcat       840
     gcctctaacc ttgtatatgc aactctgaag attcgaatct atttttatga ttcgataatg       900
     aattaataaa atttgaattt tatttcatga ttttcaagta catcatggac ataacttctg       960
     gctgttgcga aacgaacagc cctaattaca ttgtttaagc caattatccc taattggtcc      1020
     aaatacatat taactaactg tctaaaccta gttaaatagg tcaacccaga agctgtcgtc      1080
     caagtcgtcc agacttggaa gttcaggtag gctttgtgga gatgcaacgc tctcctcagg      1140
     ttgtggttga accgtatttg tacggtgtat atcctggtgt tggtgtacaa ggggtcctct      1200
     actttgcaca tcttgaaata gaggggattt tctatctccc agatatacac gccattctct      1260
     gcctgatgtg cagtgatgat ttcccctgtg cgtgaatcca tgcccggtgc agtctatgtg      1320
     gaagtagatg gagcaaccgc aatctaaatc aatccggcgt cgtctgaccg ccctcttctt      1380
     ggcttgcctg tgggccttct tgatagaggg cggatgtgag ggtgatgaag atcgcattct      1440
     tcagagtcca gttcctgagt gatgcgtttt cagctttgtc gaggaaatct ttatagctgg      1500
     caccctcacc cggattgcaa agcacgattg aggggatccc tcctttaatt tgaactggct      1560
     ttccgtattt gcaatttgac tgccagttct tttgggcccc tatgagttct ttccagtgct      1620
     ttaactttag atattgcggt gcgacgtcat caatgacgtt atactccact tcattcgagt      1680
     agaccctgtt attgaagtcc aaatgtccac tgagataatt atgtgggcct aaagaacgag      1740
     cccacattgt tttgcctgtc cttgattcac cttccactat tatactaata ggtctctccg      1800
     gccgcgcagc ggaactccga ccaaaatagt catctgccca ctcttgcatc tcgtccggca      1860
     cgttagtgaa agatgatagt ctatagggag gagtccatgg ctccggaggc tttgcaaaga      1920
     ggcgttctat attagccttg atgttatggt agcttacaat gaacgtcctt ggatctccgg      1980
     ccctgataat gtcaagagcc tctgcaacac caggtgcatt gacggcgtta tggaagacgt      2040
     cgtccttatt tgcctttgtt ccgccaggca ccttgtattg tccggattca caataatcac      2100
     cctctttggt gatgtaattc cggacggcgt tggagtcttt ggcagcctgg acatttgggt      2160
     gaaagttggc agaccttctc gggtgagtga ggtcgaaaaa tctagcatcc ttgatgtttg      2220
     acttgccgga gagctggaga agacagtgga ggtgagggaa cccgtctgaa tgttcctctc      2280
     ttgcgactct gatgtatact ggtttgacga ctgaccatga caggttttga agcatctgaa      2340
     gagcttcatc ttttgggata tcacactggg gatatgttaa gaatatattt ctggcagcta      2400
     aacgaaaggt tttaggtttc agtggcatat ttgtaataat aggaagagac accaggggga      2460
     gctctaaact tctctccatt attttggtgt cttggtgtca tatatataca taaaggctta      2520
     tggaggaatc tttagacacc aggggtaaaa gcggccatcc tataatatt                  2569
//