ID   DQ845075; SV 1; circular; genomic DNA; STD; VRL; 1962 BP.
XX
AC   DQ845075;
XX
DT   02-OCT-2006 (Rel. 89, Created)
DT   05-AUG-2007 (Rel. 92, Last updated, Version 2)
XX
DE   Finch circovirus, complete genome.
XX
KW   .
XX
OS   Finch circovirus
OC   Viruses; Circoviridae; Circovirus.
XX
RN   [1]
RP   1-1962
RX   DOI; 10.1080/03079450601113654.
RX   PUBMED; 17364513.
RA   Todd D., Scott A.N., Fringuelli E., Shivraprasad H.L., Gavier-Widen D.,
RA   Smyth J.A.;
RT   "Molecular characterization of novel circoviruses from finch and gull";
RL   Avian Pathol. 36(1):75-81(2007).
XX
RN   [2]
RP   1-1962
RA   Todd D., Scott A.N.J., Fringuelli E.;
RT   ;
RL   Submitted (11-JUL-2006) to the INSDC.
RL   Department of Agriculture and Rural Development for Northern Ireland,
RL   Veterinary Sciences Division, Stoney Road, Stormont, Belfast BT4 3SD, UK
XX
DR   MD5; 95704a59a0c23f26a7cf535306bf2a8a.
DR   EuropePMC; PMC2812408; 20007276.
DR   EuropePMC; PMC3133700; 21177928.
DR   EuropePMC; PMC3647419; 23628223.
DR   EuropePMC; PMC4447918; 26021933.
DR   EuropePMC; PMC5165205; 27795441.
DR   EuropePMC; PMC6096826; 29899109.
DR   EuropePMC; PMC6160883; 30078831.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1962
FT                   /organism="Finch circovirus"
FT                   /host="finch"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:400122"
FT   gene            29..904
FT                   /gene="rep"
FT   CDS             29..904
FT                   /codon_start=1
FT                   /gene="rep"
FT                   /product="replication-associated protein"
FT                   /db_xref="GOA:Q06J75"
FT                   /db_xref="InterPro:IPR000605"
FT                   /db_xref="InterPro:IPR003365"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:Q06J75"
FT                   /protein_id="ABI54257.1"
FT                   /translation="MPKQARESPCKRWCFTLNNPTEEEIERVKNLSPSEYHYAIVGKEK
FT                   GEQGTPHLQGFLHLKKKQRLKQMKELIPRAHFERARGSDEDNEQYCGKEGDVILTIGVP
FT                   SKGNRSDLAGAVAAVKAGRGMAEVAREFSLAYVRYGRGLRDLALLIGQKPRDFKTEVIV
FT                   LTGPSGCGKSRWANEQEGTKFYKMKGDWWDGYSNEDMVIIDDFYGWIPFCELLRLCDRY
FT                   PHKVPVKGSYVEFTSKKIIITSNTHPDHWYNEEKCYLQALFRRINRWLVWDGLRFEDAP
FT                   ECMKKYPINY"
FT   CDS             complement(614..1063)
FT                   /codon_start=1
FT                   /product="hypothetical protein"
FT                   /note="ORF C2"
FT                   /db_xref="GOA:Q06J74"
FT                   /db_xref="UniProtKB/TrEMBL:Q06J74"
FT                   /protein_id="ABI54259.1"
FT                   /translation="MAQGQCARSAFGRPSILRRQLWGCKAWPTLGGSRAATRQGTALRA
FT                   VNTREVKSSIVDGVLLHALRSIFKSQTVPNKPSVDPPKQGLQVAFLFIVPVIWVGVACN
FT                   YYFLRRELHIAALNGHLVWVTVTEAEQFTERDPPIKVIYDDHVFV"
FT   gene            complement(1212..1961)
FT                   /gene="cap"
FT   CDS             complement(1212..1961)
FT                   /codon_start=1
FT                   /transl_except=(pos:1959..1961,aa:Met)
FT                   /gene="cap"
FT                   /product="capsid protein"
FT                   /db_xref="GOA:Q06J73"
FT                   /db_xref="InterPro:IPR003383"
FT                   /db_xref="InterPro:IPR038652"
FT                   /db_xref="UniProtKB/TrEMBL:Q06J73"
FT                   /protein_id="ABI54258.1"
FT                   /translation="MLTATWNHFLIQRRMRHWRRRRHLRMRRRHWRRRRRIPANRRGHR
FT                   TNRIYRIKLVRQYQQILGKAENAGAFRFGTDGVTIILKDFFPEGKELPFEDYRIRLAKV
FT                   EGIPRREDWTHWEGAGVTVPIQDQHLRDFFKKTRLTVDPLANWDGARKWTLRKGFKRLF
FT                   RPRPQLSVTDTDTANTTAALWLNNPRGAWIPLMKKGETTASTTSGTRVNHYGLAFSFPE
FT                   PWPADFEMQIKATIYVEFRQLNMTHMN"
XX
SQ   Sequence 1962 BP; 446 A; 509 C; 559 G; 448 T; 0 other;
     accggccact tggaaccctg gaaccaccat gccgaaacaa gcgcgcgaga gcccttgcaa        60
     gcggtggtgc tttaccctca acaacccgac tgaggaggag atagagagag tgaaaaatct       120
     gtctccgagt gagtatcact atgcgatagt cgggaaagaa aagggagaac aaggcacccc       180
     gcatttgcaa gggttcctgc atctgaaaaa gaagcagcgg ttgaagcaaa tgaaagagct       240
     gattccccgc gcgcatttcg agagagcccg tggttccgat gaggacaatg agcagtattg       300
     cggcaaggag ggggacgtta tactcaccat tggggttcct tcaaagggta accggagtga       360
     ccttgccgga gctgttgccg ccgtgaaagc cggaagaggt atggccgaag tcgcgcgaga       420
     gttcagtcta gcctacgtca gatatgggcg gggcctgcgt gatcttgcgc tgctgattgg       480
     ccagaagccc cgtgacttca aaacggaagt catagtgctg accggcccta gtgggtgtgg       540
     caaatcccgc tgggccaatg aacaagaagg aactaagttt tataaaatga aaggtgattg       600
     gtgggacggg tattcaaacg aagacatggt catcatagat gacttttatg ggtggatccc       660
     gttctgtgaa ctgctccgcc tctgtgaccg ttacccacac aaggtgcccg ttaagggcag       720
     ctatgtggag ttcacgtcta agaaaataat aattacaagc aacacccacc cagatcactg       780
     gtacaatgaa gagaaatgct acctgcaagc cctgtttcgg aggatcaaca gatggcttgt       840
     ttgggacggt ctgagatttg aagatgctcc ggagtgcatg aagaagtacc ccatcaacta       900
     ttgaggactt cacctcccgc gtgttcaccg cgcgaagcgc ggtgccctgc cgcgtagcgg       960
     cccgtgaccc ccccagagtt ggccatgcct tgcaccccca aagttgcctc cttaggatcg      1020
     aaggtcggcc gaaggccgac cgagcacact gaccttgggc catgccttgc acccccaaag      1080
     ttgcctcctt aggatcgaag gtcggccgaa ggccgaccga gcacacttat tctcgaggga      1140
     aagagcggtt ttctgactta gggttaggga aaggaatacg gctatgcgga tcgttcgtac      1200
     aataaaacac tttaattcat gtgtgtcatg ttcaattgtc tgaattcaac ataaatagtg      1260
     gctttgatct gcatctcaaa gtcagccggc catggttctg ggaagctgaa tgccaggccg      1320
     tagtggttca ctctggtccc cgatgtggtg gaggcagtgg tttctccttt cttcatgagg      1380
     ggtatccatg cccctctggg gttgttcagc cacagcgcgg ctgttgtgtt agccgtgtca      1440
     gtgtccgtaa cggacagctg tggtcggggg cgaaacagcc gcttaaaacc ttttctcagg      1500
     gtccactttc tggcaccatc ccagtttgca agggggtcga ccgtcagccg ggtcttctta      1560
     aagaagtctc gaaggtgctg atcctgtatt gggacagtta cccccgcccc ttcccagtgc      1620
     gtccaatctt cccggcgggg tatgccttct actttggcca gacggattct atagtcctca      1680
     aagggtagct ccttcccttc tgggaaaaag tctttgagga ttatagttac cccgtcagtg      1740
     ccgaacctga aggccccggc attttcagcc ttgccgagta tctgctggta ctgtctgacc      1800
     agctttatcc ggtagatcct gttggtgcgg tggccacgcc tgttggcagg gatccgcctc      1860
     ctgcggcgcc agtgccgcct gcgcatgcgc agatggcgtc tccgcctcca gtgacgcatc      1920
     cgcctctgaa tgaggaagtg gttccaagtg gccgttagta tt                         1962
//