ID DQ285629; SV 1; linear; genomic RNA; STD; VRL; 7382 BP. XX AC DQ285629; XX DT 05-DEC-2005 (Rel. 86, Created) DT 24-JUN-2007 (Rel. 92, Last updated, Version 5) XX DE Murine norovirus 1 clone CW1, complete genome. XX KW . XX OS Murine norovirus 1 OC Viruses; Riboviria; Caliciviridae; Norovirus. XX RN [1] RP 1-7382 RX DOI; 10.1371/journal.pbio.0020432. RX PUBMED; 15562321. RA Wobus C.E., Karst S.M., Thackray L.B., Chang K.O., Sosnovtsev S.V., RA Belliot G., Krug A., Mackenzie J.M., Green K.Y., Virgin H.W.; RT "Replication of Norovirus in cell culture reveals a tropism for dendritic RT cells and macrophages"; RL PLoS Biol. 2(12):E432-E432(2004). XX RN [2] RP 1-7382 RA Wobus C.E., Karst S.M., Thackray L.B., Chang K.-O., Sosnovtsev S.V., RA Belliot G., Krug A., Mackenzie J.M., Green K.Y., Virgin H.W.IV.; RT ; RL Submitted (08-NOV-2005) to the INSDC. RL Pathology and Immunology, Washington University School of Medicine, 660 RL South Euclid Ave, St. Louis, MO 63110, USA XX DR MD5; 435726f69363ce8ad4a8c7f9067a0d22. DR COMPARE-RefGenome; Murine norovirus 1. DR EuropePMC; PMC1563789; 16873239. DR EuropePMC; PMC1904157; 17581883. DR EuropePMC; PMC2045448; 17652401. DR EuropePMC; PMC2292603; 18245239. DR EuropePMC; PMC2395209; 18385231. DR EuropePMC; PMC3187498; 21849454. DR EuropePMC; PMC3233154; 21994457. DR EuropePMC; PMC3274520; 22347381. DR EuropePMC; PMC3446604; 22787222. DR EuropePMC; PMC3568589; 23263949. DR EuropePMC; PMC3648151; 23487472. DR EuropePMC; PMC3767632; 24040380. DR EuropePMC; PMC3950689; 24335283. DR EuropePMC; PMC4029972; 24847970. DR EuropePMC; PMC4068436; 24637690. DR EuropePMC; PMC4143647; 24662519. DR EuropePMC; PMC4277584; 25362063. DR EuropePMC; PMC4288183; 25520198. DR EuropePMC; PMC4300638; 25392209. DR EuropePMC; PMC4509552; 25678268. DR EuropePMC; PMC4646915; 26363064. DR EuropePMC; PMC4649231; 26392512. DR EuropePMC; PMC4928471; 27375966. DR EuropePMC; PMC4996510; 27556406. DR EuropePMC; PMC5244318; 27881660. DR EuropePMC; PMC5393397; 28087593. DR EuropePMC; PMC5554501; 28848558. DR EuropePMC; PMC5841303; 29515206. DR EuropePMC; PMC5923142; 29530860. DR EuropePMC; PMC5952153; 29563286. XX FH Key Location/Qualifiers FH FT source 1..7382 FT /organism="Murine norovirus 1" FT /isolate="Mu/NoV/GV/MNV1/2002/USA" FT /mol_type="genomic RNA" FT /country="USA" FT /isolation_source="brain of interferon-alpha/beta/gamma FT receptor knock-out mouse" FT /clone="CW1" FT /sub_clone="P3" FT /note="plaque purified three times and passaged three FT times" FT /db_xref="taxon:223997" FT 5'UTR 1..5 FT CDS 6..5069 FT /codon_start=1 FT /product="polyprotein" FT /note="ORF1; encodes helicase, protease, and polymerase" FT /db_xref="GOA:Q2V8W5" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001665" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR013614" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q2V8W5" FT /protein_id="ABB90153.1" FT /translation="MRMATPSSAPSVRNTEKRKNKKASSKASVSFGAPSPLSSESEDEI FT NYMTPPEQEAQPGALAALHAEGPLAGLPVTRSDARVLIFNEWEERKKSDPWLRLDMSDK FT AIFRRYPHLRPKEDRPDAPSHAEDAMDAKEPVIGSILEQDDHKFYHYSVYIGGGLVMGV FT NNPSAAVCQATIDVEKLHLWWRPVWEPRHPLDSAELRKCVGMTVPYVATTVNCYQVCCW FT IVGIKDTWLKRAKISRDLPFYSPVQDWNVDPQEPFIPSKLRMVSDGILVALSAVIGRPI FT KNLLASVKPLNILNIVLSCDWTFSGIVNALILLAELFDIFWTPPDVTNWMISIFGEWQA FT EGPFDLALDVVPTLLGGIGMAFGLTSETIGRKLASTNSALKAAQEMGKFAIEVFKQIMA FT WIWPSEDPVPALLSNMEQAIIKNECQLENQLTAMLRDRNAGAEFLRSLDEEEQEVRKIA FT AKCGNSATTGTTNALLARISMARAAFEKARAEQTSRVRPVVIMVSGRPGIGKTCFCQNL FT AKRIAASLGDETSVGIIPRADVDHWDAYKGARVVLWDDFGMDNVVKDALRLQMLADTCP FT VTLNCDRIENKGKMFDSQVIIITTNQQTPVPLDYVNLEAVCRRIDFLVYAESPVVDDAR FT ARAPGDVNAVKAAMRPDYSHINFILAPQGGFDRQGNTPYGKGVTKIIGATALCARAVAL FT VHERHDDFGLQNKVYDFDAGKITAFKAMAADAGIPWYKMAAIGCKAMGCTCVEEAMHLL FT KDYEVAPCQVIYNGATYNVSCIKGAPMVEKVKEPELPKTLVNCVRRIKEARLRCYCRMA FT ADVITSILQAAGTAFSIYHQIEKRSRPSFYWDRGYTYRDGPGSFDIFEDDDDGWYHSEG FT KKGKNKKGRGRPGVFRTRGLTDEEYDEFKKRRESRGGKYSIDDYLADREREEELLERDE FT EEAIFGDGFGLKATRRSRKAERAKLGLVSGGDIRARKPIDWNVVGPSWADDDRQVDYGE FT KINFEAPVSIWSRVVQFGTGWGFWVSGHVFITAKHVAPPKGTEIFGRKPGDFTVTSSGD FT FLKYYFTSAVRPDIPAMVLENGCQEGVVASVLVKRASGEMLALAVRMGSQAAIKIGSAV FT VHGQTGMLLTGSNAKAQDLGTIPGDCGCPYVYKKGNTWVVIGVHVAATRSGNTVIAATH FT GEPTLEALEFQGPPMLPRPSGTYAGLPIADYGDAPPLSTKTMFWRTSPEKLPPGAWEPA FT YLGSKDERVDGPSLQQVMRDQLKPYSEPRGLLPPQEILDAVCDAIENRLENTLEPQKPW FT TFKKACESLDKNTSSGYPYHKQKSKDWTGSAFIGDLGDQATHANNMYEMGKSMRPIYTA FT ALKDELVKPDKIYGKIKKRLLWGSDLGTMIRAARAFGPFCDALKETCIFNPIRVGMSMN FT EDGPFIFARHANFRYHMDADYTRWDSTQQRAILKRAGDIMVRLSPEPDLARVVMDDLLA FT PSLLDVGDYKIVVEEGLPSGCPCTTQLNSLAHWILTLCAMVEVTRVDPDIVMQESEFSF FT YGDDEVVSTNLELDMVKYTMALRRYGLLPTRADKEEGPLERRQTLQGISFLRRAIVGDQ FT FGWYGRLDRASIDRQLLWTKGPNHQNPFETLPGHAQRPSQLMALLGEAAMHGEKYYRTV FT ASRVSKEAAQSGIEMVVPRHRSVLRWVRFGTMDAETPQERSAVFVNEDE" FT CDS 5056..6681 FT /codon_start=1 FT /product="capsid protein" FT /db_xref="GOA:Q2V8W4" FT /db_xref="InterPro:IPR004005" FT /db_xref="InterPro:IPR013643" FT /db_xref="InterPro:IPR029053" FT /db_xref="InterPro:IPR033703" FT /db_xref="PDB:3LQ6" FT /db_xref="PDB:3LQE" FT /db_xref="PDB:6CRJ" FT /db_xref="UniProtKB/TrEMBL:Q2V8W4" FT /protein_id="ABB90154.1" FT /translation="MRMSDGAAPKANGSEASGQDLVPAAVEQAVPIQPVAGAALAAPAA FT GQINQIDPWIFQNFVQCPLGEFSISPRNTPGEILFDLALGPGLNPYLAHLSAMYTGWVG FT NMEVQLVLAGNAFTAGKVVVALVPPYFPKGSLTTAQITCFPHVMCDVRTLEPIQLPLLD FT VRRVLWHATQDQEESMRLVCMLYTPLRTNSPGDESFVVSGRLLSKPAADFNFVYLTPPI FT ERTIYRMVDLPVIQPRLCTHARWPAPVYGLLVDPSLPSNPQWQNGRVHVDGTLLGTTPI FT SGSWVSCFAAEAAYEFQSGTGEVATFTLIEQDGSAYVPGDRAAPLGYPDFSGQLEIEVQ FT TETTKTGDKLKVTTFEMILGPTTNADQAPYQGRVFASVTAAASLDLVDGRVRAVPRSIY FT GFQDTIPEYNDGLLVPLAPPIGPFLPGEVLLRFRTYMRQIDTADAAAEAIDCALPQEFV FT SWFASNAFTVQSEALLLRYRNTLTGQLLFECKLYNEGYIALSYSGSGPLTFPTDGIFEV FT VSWVPRLYQLASVGSLATGRMLKQ" FT CDS 6681..7307 FT /codon_start=1 FT /product="small basic protein" FT /db_xref="InterPro:IPR004278" FT /db_xref="UniProtKB/TrEMBL:Q80J93" FT /protein_id="ABB90155.1" FT /translation="MAGALFGAIGGGLMGIIGNSISNVQNLQANKQLAAQQFGYNSSLL FT ATQIQAQKDLTLMGQQFNQQLQTNSFKHDLEMLGAQVQAQAQAQENAINIKTAQLQAAG FT FSKTDAARLALGQQPTRAVDWSGTRYYTANQPVTGFSGGFTPTYTPGRQVTSRPVDTSP FT LPISGGRLPSLRGGSWSPRDHTPATQGTYTNGRFVSLPKIGSSRA" FT 3'UTR 7308..7382 XX SQ Sequence 7382 BP; 1555 A; 2133 C; 2053 G; 1641 T; 0 other; gtgaaatgag gatggcaacg ccatcttctg cgccctctgt gcgcaacaca gagaaacgca 60 aaaacaagaa ggcttcgtct aaagctagtg tctcctttgg agcacctagc cccctctctt 120 cggagagcga agacgaaatt aattacatga cccctcctga gcaggaagct cagcccggcg 180 cccttgcggc ccttcatgcg gaagggccgc ttgccgggct ccccgtgacg cgtagtgatg 240 cacgcgtgct gatcttcaat gagtgggagg agaggaagaa gtctgatccg tggctacggc 300 tggacatgtc tgataaggct atcttccgcc gttaccccca tctgcggcct aaggaggata 360 ggcctgacgc gccctcccat gcggaggacg ctatggatgc caaggagcct gtgatcggct 420 ctatcttgga gcaggatgat cacaagtttt accattactc tgtctacatc ggtggcggcc 480 ttgtgatggg ggtcaacaac cccagtgctg cggtctgcca ggcaacgatt gatgtggaga 540 agctacacct ctggtggcgg cctgtctggg agccccgcca tccccttgac tcggctgagt 600 tgaggaagtg cgtgggcatg actgtcccct acgtggccac caccgtcaac tgttatcagg 660 tctgctgctg gattgttggc atcaaggaca cctggctgaa gagggcgaag atctctagag 720 atctgccctt ctacagcccc gtccaggact ggaacgtcga cccccaggag cccttcattc 780 catccaagct caggatggtc tcggatggca tcctggtggc cttgtcggca gtgattggcc 840 ggccaattaa gaacctactg gcctcagtta agccgctcaa cattctcaac atcgtgctga 900 gctgtgattg gaccttttcg ggcattgtca atgccctgat cttgcttgct gagctctttg 960 acatcttttg gaccccccct gatgtgacca actggatgat ctctatcttc ggggaatggc 1020 aggccgaagg gcccttcgac cttgctcttg acgtggtgcc caccctgttg ggcgggatcg 1080 ggatggcttt tggcctcacc tctgagacca tcgggcgcaa gctcgcttcc accaactcgg 1140 ctctcaaggc cgcccaagag atgggcaagt tcgccataga ggtcttcaag caaattatgg 1200 cctggatctg gccctctgag gacccagtgc cagccctctt atccaacatg gagcaggcca 1260 tcattaagaa tgagtgtcaa ctggagaacc aactcacggc catgttgcgg gatcgcaacg 1320 caggggctga attcctaagg tcccttgatg aggaggagca ggaagtccgc aagatcgcag 1380 ctaagtgcgg caactcggcc accactggaa ccaccaacgc tctgctggcc aggatcagca 1440 tggcccgcgc ggcctttgag aaagctcgcg ctgaacagac ctcccgagtc cgccctgtgg 1500 tgatcatggt ctcaggcagg cccgggatcg ggaaaacctg cttttgccaa aacctggcca 1560 agaggattgc tgcgtccctg ggtgatgaga cctctgttgg catcatacca cgcgctgatg 1620 tcgaccactg ggatgcttac aagggagcca gagtggttct ctgggatgat ttcggcatgg 1680 acaacgtggt gaaggatgca ctgaggcttc agatgcttgc cgacacgtgc ccagtgacac 1740 tcaattgtga caggattgag aacaagggaa agatgtttga ctctcaggtc attatcatca 1800 ccacaaatca acaaaccccc gtgcccctgg actatgtcaa cctggaggcg gtctgccgcc 1860 gcatagattt cctggtttat gctgagagcc ctgttgttga tgatgctcgg gccagagccc 1920 ctggcgatgt gaatgcagtg aaagctgcca tgaggcccga ttacagccac atcaatttca 1980 tcttggcacc gcagggcggc tttgaccgtc agggaaacac cccctacggt aagggcgtca 2040 ccaagatcat tggcgccact gctctttgcg cgagagcggt tgctcttgtc catgagcgcc 2100 atgatgattt cggcctccag aacaaggtct atgactttga tgccggcaag atcaccgcct 2160 tcaaagccat ggcggctgac gccggcattc catggtacaa aatggcagct attgggtgca 2220 aagcaatggg gtgcacctgt gtagaggagg ccatgcattt acttaaggat tatgaggtgg 2280 ctccctgtca ggtgatctac aatggtgcca cctataatgt gagctgcatc aagggtgccc 2340 caatggttga aaaggtcaag gagcctgaat tgcccaaaac acttgtcaac tgtgtcagaa 2400 ggataaagga ggcccgcctc cgctgctact gtaggatggc tgctgacgtc atcacgtcca 2460 ttctgcaggc ggccggcacg gccttctcta tttaccacca gattgagaag aggtctagac 2520 catcctttta ttgggatcgt ggatacacct accgtgacgg acctggatcc tttgacatct 2580 ttgaggatga cgatgatggg tggtaccact ctgagggaaa gaagggcaag aacaagaagg 2640 gccgggggcg acccggagtc ttcagaaccc gtgggctcac ggatgaggag tacgatgaat 2700 tcaagaagcg ccgcgagtct aggggcggca agtactccat tgatgattac ctcgctgacc 2760 gcgagcgaga agaagaactc ctggagcggg acgaggagga ggctatcttc ggggatggct 2820 tcgggttgaa ggccacccgc cgttcccgca aggcagagag agccaaactg ggcctggttt 2880 ctggtggcga catccgcgcc cgcaagccga tcgactggaa tgtggttggc ccctcctggg 2940 ctgacgatga ccgccaggtc gactacggcg agaagatcaa ctttgaggcc ccagtctcca 3000 tctggtcccg tgttgtgcag ttcggcacgg ggtggggctt ttgggtgagc ggccacgtct 3060 tcatcaccgc caagcatgtg gcgcccccca agggcacgga gatctttggg cgcaagcccg 3120 gggacttcac tgtcacttcc agcggggact tcttgaagta ctacttcacc agcgccgtca 3180 ggcctgacat tcccgccatg gtcctggaga atgggtgcca ggagggcgtc gtcgcctcgg 3240 tccttgtcaa gagagcctcc ggcgagatgc ttgccctggc tgtcaggatg ggttcacagg 3300 ccgccatcaa gattggtagt gccgttgtgc atgggcaaac tggcatgctc ctgactggct 3360 ctaatgccaa ggcccaggac ctcgggacca tcccgggcga ctgtggctgt ccctatgttt 3420 ataagaaggg taacacctgg gttgtgattg gggtgcacgt ggcggccact aggtctggta 3480 acacagtcat tgccgccact cacggagaac ccacacttga ggctctggag ttccagggac 3540 cccccatgct tccccgcccc tcaggcacct atgcaggcct ccccatcgcc gattacggcg 3600 acgctccccc cttgagcacc aagaccatgt tctggcgtac ctcgccagag aagcttcccc 3660 ctggggcttg ggagccagcc tatctcggct ctaaagatga gagggtggac ggtccttccc 3720 ttcagcaggt catgcgagat cagcttaagc cctattcaga accacgcggt ctgcttcccc 3780 ctcaagaaat ccttgatgca gtctgcgacg ccattgagaa ccgccttgag aacacccttg 3840 aaccacagaa gccctggaca tttaagaagg cttgtgagag cttggacaag aacaccagta 3900 gtgggtatcc ctatcacaag cagaagagca aggactggac ggggagcgct tttattggcg 3960 atcttggtga ccaggccacc cacgccaaca acatgtatga gatgggtaaa tccatgcgac 4020 ccatttatac agctgccctc aaggatgaac tggttaagcc agacaagatc tacgggaaga 4080 taaagaagag gcttctctgg ggctctgacc ttggcaccat gattcgcgct gcccgtgctt 4140 ttggcccttt ctgtgatgct ctgaaagaaa cctgcatttt caaccccatc agagtgggca 4200 tgtcgatgaa cgaagatggc cccttcatct tcgcaagaca cgccaatttc aggtaccaca 4260 tggatgctga ctataccagg tgggactcca cccaacagag agccatccta aagcgcgctg 4320 gcgacatcat ggtgcgcctc tcccctgagc cagacttggc tcgggttgtc atggatgatc 4380 tcctggcccc ctcgctgttg gacgtcggcg actataagat cgttgtcgag gaggggctcc 4440 catccggctg cccttgcacc acacagctga atagtttggc tcactggatt ttgacccttt 4500 gtgcaatggt tgaggtaacc cgagttgacc ctgacattgt gatgcaagaa tctgagttct 4560 ccttctatgg tgatgacgag gtggtttcga ccaacctcga gttggatatg gttaagtaca 4620 ccatggcttt gaggcggtac ggtctcctcc cgactcgcgc ggacaaggag gagggacctc 4680 tggagcgtcg ccagacgctg cagggcatct ccttcctgcg ccgtgcgata gttggtgacc 4740 agtttgggtg gtacggtcgt cttgatcgtg ccagcatcga ccgccagctc ctctggacta 4800 aaggacctaa ccaccagaac ccctttgaga ctctccctgg acatgctcag agaccctccc 4860 aactaatggc cctgctcggt gaggctgcca tgcatggtga aaagtattac aggactgtgg 4920 cttcccgtgt ctccaaggag gccgcccaaa gtgggataga aatggtagtc ccacgccacc 4980 gatctgttct gcgctgggtg cgctttggaa caatggatgc tgagaccccg caggaacgct 5040 cagcagtctt tgtgaatgag gatgagtgat ggcgcagcgc caaaagccaa tggctctgag 5100 gccagcggcc aggatcttgt tcctgccgcc gttgaacagg ccgtccccat tcaacccgtg 5160 gctggcgcgg ctcttgccgc ccccgccgcc gggcaaatta accaaattga cccctggatc 5220 ttccaaaatt ttgtccagtg cccccttggt gagttttcca tctcgcctcg aaacacccca 5280 ggtgaaatac tgtttgattt ggccctcggg ccagggctta acccctacct tgcccacctc 5340 tcagccatgt acaccggctg ggttgggaac atggaggttc agctggtcct cgccggcaat 5400 gcctttactg ctggcaaggt ggttgttgcc cttgtaccac cctattttcc caaggggtca 5460 ctcactactg cccagatcac atgcttccca catgtcatgt gtgatgtgcg caccctggag 5520 cccattcaac tccctcttct tgatgtgcgt cgagtccttt ggcatgctac ccaggatcaa 5580 gaggaatcta tgcgcctggt ttgcatgctg tacacgccac tccgcacaaa cagcccgggt 5640 gatgagtctt ttgtggtctc tggccgcctt ctttctaagc cggcggctga tttcaatttt 5700 gtctacctaa ctccccccat agagagaacc atctaccgga tggtcgactt gcccgtgata 5760 cagccgcggc tgtgcacgca cgcacgttgg cctgccccgg tctatggtct cttggtggac 5820 ccatccctcc cctcaaatcc ccagtggcag aatggaaggg tgcacgttga tgggaccctg 5880 cttggtacca ccccaatctc cggttcatgg gtgtcctgct ttgcggcgga ggctgcctat 5940 gagttccaat cgggcaccgg tgaggtggcg acattcaccc tgattgagca ggatggatct 6000 gcctacgtcc ccggtgacag ggcagcacca ctcggttacc ccgatttctc tgggcaactg 6060 gagatcgagg tccagaccga gaccaccaag actggagaca agctcaaggt caccactttt 6120 gagatgattc ttggcccaac gaccaacgcg gaccaggccc cctaccaggg cagggtgttc 6180 gccagcgtca ctgctgcggc ctctcttgac ttggtggatg gcagggttcg tgcggtccca 6240 agatccatct acggttttca ggacaccatc cctgaataca acgatgggct actggttccc 6300 cttgcccccc caattggtcc ctttctcccc ggcgaggtcc tcctgaggtt ccggacctac 6360 atgcgtcaga tcgacaccgc tgacgccgca gcagaggcga tagactgtgc actcccccag 6420 gagtttgtct cctggttcgc gtctaacgcg ttcaccgtgc agtccgaggc cctgctcctt 6480 agatacagga acaccctgac tgggcaactg ctgttcgagt gcaagctcta caacgaaggt 6540 tacatcgcct tgtcttattc cggctcagga cccctcacct tcccgaccga tggcatcttt 6600 gaggtcgtca gttgggttcc tcgcctttac caattggcct ctgtgggaag tttggcaaca 6660 ggccgaatgc tcaaacaata atggctggtg ctctttttgg agcgattgga ggtggcctga 6720 tgggcataat tggcaattcc atctcaaatg ttcaaaacct tcaggcaaat aaacaattgg 6780 cagctcagca atttggttat aattcttccc tgcttgcaac gcaaattcaa gcccagaagg 6840 atctcactct gatggggcag caattcaacc agcagctcca aaccaactct ttcaagcacg 6900 acttggaaat gcttggcgct caggtgcaag cccaggcgca ggcccaggag aacgccatca 6960 atatcaaaac ggcgcagctc caggccgcag gcttttcaaa gacggatgcc gcacgccttg 7020 ccttggggca gcagcccacg agggccgtgg attggtctgg gacgcggtac tacaccgcta 7080 accagccagt cacgggcttc tcgggtggct ttaccccaac ctacactcca ggtaggcaag 7140 tgacatcccg ccctgtggac acatcccctc taccgatctc gggtggacgc ttgccctccc 7200 ttcgtggagg ttcctggtcc ccgcgcgacc atacgccggc gactcaaggc acctacacga 7260 acggacggtt cgtgtctctc cctaagatcg ggagtagcag ggcataggtt ggaagagaaa 7320 ccttttgtga aaatgatttc tgcttactgc tttcttttct ttgtggtagt tagatgcatt 7380 tt 7382 //