ID DQ249299; SV 1; linear; genomic RNA; STD; VRL; 7687 BP. XX AC DQ249299; XX DT 01-JUL-2006 (Rel. 88, Created) DT 15-APR-2011 (Rel. 108, Last updated, Version 3) XX DE Duck hepatitis A virus 1 strain 03D, complete genome. XX KW . XX OS Duck hepatitis A virus 1 OC Viruses; Riboviria; Picornavirales; Picornaviridae; Avihepatovirus. XX RN [1] RP 1-7687 RX DOI; 10.1016/j.virusres.2006.09.007. RX PUBMED; 17067712. RA Tseng C.H., Knowles N.J., Tsai H.J.; RT "Molecular analysis of duck hepatitis virus type 1 indicates that it should RT be assigned to a new genus"; RL Virus Res. 123(2):190-203(2007). XX RN [2] RP 1-7687 RA Tseng C.H., Knowles N.J., Tsai H.J.; RT ; RL Submitted (19-OCT-2005) to the INSDC. RL Veterinary Medicine, National Taiwan University, No. 1, Sec. 4, Roosevelt RL Road, Taipei, Taiwan 106, Taiwan XX DR MD5; f669ced6478fbbc099a1007ed154cb51. DR EuropePMC; PMC1900287; 17392358. DR EuropePMC; PMC2224395; 17942560. DR EuropePMC; PMC3446583; 22923805. DR EuropePMC; PMC3541788; 22875254. DR EuropePMC; PMC4093779; 23559479. DR EuropePMC; PMC4615790; 26158858. XX FH Key Location/Qualifiers FH FT source 1..7687 FT /organism="Duck hepatitis A virus 1" FT /strain="03D" FT /serotype="1" FT /mol_type="genomic RNA" FT /db_xref="taxon:1006061" FT 5'UTR 1..623 FT CDS 624..7373 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:Q0ZQM1" FT /db_xref="InterPro:IPR000199" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001676" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR006703" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR029053" FT /db_xref="InterPro:IPR033703" FT /db_xref="UniProtKB/TrEMBL:Q0ZQM1" FT /protein_id="ABB76602.1" FT /translation="MDTLTKNIEDATVNIIGSCAEKVEEAISGLGAVESVASTNSAIAT FT ANATTTQTIPDPTEGSTDDFYSCSYEVGAQGDNISRLVHLVTGQWVPNDDYYACLRWLA FT TPACFFQNNTQPAYGQTRYFRFIRCGFHFRLLVNAPSGSAGALMLVWMPYPYCRVLSGT FT NQIHANVERRSLMNLPYAILDLRTNTEIDLVVPYVNYRNYVEITTSDTTGGAICVVVLG FT KYRHGNGTSNTVDFTLFGELLETDLQCPRPFDNQGKRKPRRRPIHKPKNPPQEPRVIIQ FT PGPGAANLSNSSVIAMAESTALANEGTAVDYSTAGCASSVDDVIMVLRRWQILASFQWQ FT STLTPSVRINRYQLIFRNIPTFSLFFDKFQYWRGSLEVKFMTFGSQFNTGRYQMSWYPI FT ADGEQSLAQCQNSVFVTGDVCATPVTLTLPFTSTTWRKSTRDPYGYLMWHVVNRLTVNS FT SAPSNIDCTVLLRVGKDFQFTAPLYGNLQMATNNQGDSNQLGDDEPVCFLNFETANVPI FT QGESHTLVKHLFGRQWLVRTVQHAPTVQELDLQVPDRGHASLIRFFAYFSGEIILTIVN FT NGTTPAMVAHSYSMDDLSSEYAVTAMGGVMIPANSAKNISVPFYSVTPLRPTRPIPGTS FT EATFGRLFMWTQSGSLSVFMGLKKPALFFPLPAPTSTTTSRGSNGVIPTLDQSGDEVDC FT HFCEICSKMKRMWKPRGHFRFCLRLKTLAFELNLEIESDQIRNKKDLTTEGVEPNPGPI FT LVVGKSGSGKSRLCNVLAGVELFESKLSPRSVTMVHQVETIDVEGKKVTIVDSPETPNY FT DGPISAFFYLIEAGRFTAEDKEYIQMMRKRFPGFEKSTILILNRADELKTDDDIRNWVK FT TSGELDSLVRACGGRIAKFHRHKINRAKLLEKAATLPEFVSHLPRLVYKDRKMYRHYGV FT QCGSTVFHMDSENILESALNGEVTIKQEKWNGNWKPAGDHMQSTASMYLKSQTMPKFTF FT SIDENCETWARHLLGDYGETQGQIFKERLMWAAALGFFMTMKITTDQSFPGKDAIHTVL FT TKISNFIFGGLENEVVRVVIRTVIRIVCYLILYIHSPNIVTTGTLVALLALDATSMSMD FT QGLKTLCMSLVDGDFGKFCSALLEKIQIVDEADLKKTIPKFNDMLEDQSGKATSPKSFN FT DWTTCAKNVQWWLESFVKVVNWLKEKVFPSKTDPTLQWLQDHEEHIAIMLALCDEHLCM FT LRTEKDYICEHNTRPKHQRLVEMVSGTLNQLQGISSARELAARLQHVLNKLHQVNFEPE FT LEWTHRPEPLGIWISGGPGVGKSFLSNYIVKEIAKLKHWKSYANPTGSKHMDGYVSQEI FT HVFDDFGQNREEEDYSLICNLISSVPFITPKASVEAKGTQYRGRLVVVTTNRRDFTSCK FT LTDPDALERRFPIRLNIRPLQKYNHKGRLDVATAMRDGSLQGGTCWERDIGQLGLECWN FT PINGQILIDEIMSELQVRQEVASFMNQSKVRRFSDPETLFSDLEDLKLEFDFDQLEQQA FT KLFAKPKEGKISKFRAWVRDCTGKIKGFLERNRAWILGIGTLGTIMSLVTMCVPLARRF FT AQSIYSQQPVAKTLPKDFKVAVKKHIEKLETELEDQSGRVNFRHICNRLVNVSNEDEVA FT TGLAIGGKNVLTFGHSKFTQLDEIRDIQFNAPAKGTPITYDGEPTDLQLLECDIPHQFK FT DVSKLIATEDYRGNGWLVWKDQDQYMVQDVTKIRPFGSTTTASGTTSCQTYIYNCKTGP FT GSCGGVLVAQIGGNLKILGIHTSGNGTMGAANRVFPVFNQGKVVSKQYAGKILYHQPRK FT TAYMKSPVYEDSPYEPAVLSINDQRLGVKIEDMAKKASDKYIGNVFQPPPEAFQLAKTH FT VAEKLSRVLGCHDTISYESAVSSDVIPMNWDTSPGIKYKGETKRQLVLKSSFRQDVLKQ FT LQSPSTVFTCYLKDELRKKEKIKEGKTRGIEACNFDHTVAYRMVMGDIFSNIYDDSFIM FT SGCAVGINPFCEWDNLLANLQPYNLCLDFSGFDGSLSAQILEEAVDVLSYFHNDPALVK FT RIHAPTIYSTHYVTDEIWQVEGGMCSGSPCTTVVNSIVNQLACYTILAVLGYDINQCYV FT VSYGDDCVLSVPEVRDISKLSHYFKLFFGMTATASDKESDITWLAPMEIEFLKRTPAFL FT PGTRKIIGVLDKEVLEGKIQWCKGPEAFKQQLDSFLLEAALHGEEYYHEVTSKLKARCP FT VLDIQPWGVAKLRAYTACMMI" FT 3'UTR 7374..7687 XX SQ Sequence 7687 BP; 2194 A; 1574 C; 1749 G; 2170 T; 0 other; gaaagcgggt gcatgcatgg ccattttcca gcacaggttc agctggtatg gcatgcatgc 60 atcgactgct tgggggtgtc cctgaccccc ttaattcaac gtctagccca cgatacgggc 120 accctaccca atttgtatcc ctttacctcc catggattga cttgtatgga cttggatcta 180 aattggatta tcctttactt gtggtggtta gccaaccatg ctctggtgta atgattccat 240 gtgttcatct ggctaagtac cgacctagga ggtggtgctg aaatattgca agccactagc 300 gtcgttatgc ttagcctctg gatacatggg attaattgca ttctgtacag aggaaggcta 360 gtctatgcct tgggctaatg gtcttcgttg tgaaacggat taccggtagt agcatcttag 420 actaccaagg ttgtaggtga gtgtgtggtc tagagtaggc acacatctgt ccaggcacat 480 gcacattgtt gcgattgctc cagactagtt cctgagggac agatgttgtg gggggcttgg 540 gaaaaccccc ttaacctaca ttgcctgata gggtcgcggc tggtcgagtc ccacacacta 600 taataccagt agactttcat gcaatggata ctcttaccaa aaatattgaa gatgcaacag 660 tcaacatcat tggatcttgt gcagaaaagg tggaagaagc aatttcaggc ctaggggcag 720 tggaaagtgt ggcatccact aattcagcca ttgccactgc caatgcaaca actacacaga 780 caataccaga cccaacggag ggttccactg atgatttcta ctcctgttct tatgaagtag 840 gagctcaagg ggataacatt tctagattgg tacatctggt tacaggacag tgggttccaa 900 atgatgatta ttatgcctgc ctacgctggt tagcaacacc tgcttgtttt ttccaaaata 960 acacacaacc agcttatggc cagacacgat attttaggtt tatcagatgt ggcttccatt 1020 ttaggttgct tgtaaatgcc ccctctggct ctgctggagc acttatgtta gtttggatgc 1080 cctaccccta ttgtcgggtc ttatctggta ctaatcagat ccatgcaaat gttgagagaa 1140 ggagtctaat gaacctgcct tatgccatct tggatctccg caccaataca gaaattgacc 1200 ttgtggttcc atatgtcaac taccggaact atgtggagat tacaaccagt gatacaactg 1260 gtggtgctat ctgtgtggtt gtgctaggca agtaccgaca tggcaatgga acctccaaca 1320 ctgtagattt cacattattt ggagaactcc ttgaaactga tttgcaatgt ccccgaccat 1380 tcgacaatca gggaaagaga aaaccacgca ggaggcccat tcacaaaccc aagaatccac 1440 cacaggagcc aagagtcatc attcaaccag gacctggggc agcaaacctt tcaaactcta 1500 gtgttatagc aatggctgaa agcacagcac ttgccaatga agggacagct gttgactatt 1560 ccacagccgg atgtgcatca tctgttgatg atgtaattat ggtcctgcgc cgatggcaga 1620 ttctagcaag tttccagtgg cagtcaaccc taactcccag tgttcgcatt aatcgctatc 1680 aattgatttt cagaaacatc ccaacattct ctctcttctt tgacaaattt cagtactgga 1740 gagggtcatt ggaggttaaa ttcatgacat ttggcagcca attcaacact gggagatatc 1800 aaatgtcttg gtatccaatt gctgatggtg aacagagctt ggcgcaatgc cagaattcgg 1860 tgtttgtaac tggggatgtg tgtgctacac ccgtgaccct aactctgcca tttacatcaa 1920 ccacctggcg taaaagcaca agagaccctt acgggtattt gatgtggcat gttgtcaatc 1980 gactcactgt gaattcatca gccccatcca atattgactg cacagtgttg ctccgtgtgg 2040 gcaaagattt tcagtttact gccccactct atggaaattt gcagatggca accaataacc 2100 aaggtgattc caaccagtta ggggatgatg agccagtttg ctttctgaac tttgagacag 2160 ctaatgtccc gatacaaggt gaatctcaca ctcttgttaa acacctgttt gggaggcaat 2220 ggttggttag gactgtgcaa cacgctccaa ctgtgcaaga gttggacctc caagttccag 2280 acagaggaca tgcctctctc attcggttct ttgcctattt ttctggagag atcattctca 2340 ctattgttaa caatggcact acaccagcaa tggtagcaca ttcctactct atggatgatc 2400 tcagttcaga atatgctgtt acagcaatgg gaggtgtgat gattcctgct aatagtgcca 2460 aaaatatatc tgtaccattc tactctgtaa caccactcag gccaactcga ccaattcctg 2520 gcacatcaga agcaaccttt ggcaggctgt tcatgtggac tcaatcagga agtctttcag 2580 tttttatggg tctcaagaaa ccagctctct tcttcccact ccctgctccc acttccacaa 2640 caacatcacg ggggtccaat ggtgttattc ccacattgga tcagtctggg gatgaagtag 2700 attgccactt ctgcgaaatt tgttctaaaa tgaagaggat gtggaagcca agagggcact 2760 tcagattctg tcttagactc aaaacactag catttgaact caatctggaa attgaatctg 2820 accaaattag aaacaagaaa gatctcacta ctgaaggagt ggaaccaaac ccaggaccta 2880 tcttagttgt tggcaaatca ggaagtggca agagccgact ttgtaatgtt ctagctggtg 2940 tggagctctt tgaatcaaaa ctgtcaccac gttcagttac aatggttcat caggttgaga 3000 caattgacgt tgaggggaag aaggtgacga tagtggattc acctgaaaca ccaaattatg 3060 atggccccat ttctgccttt ttttacttga ttgaggcagg caggttcaca gctgaagaca 3120 aggagtacat ccaaatgatg agaaaacgct ttccaggctt tgagaaatcc actattttga 3180 ttttgaaccg agcagatgaa ttgaaaactg atgatgatat aagaaattgg gttaagacat 3240 ctggagagtt ggactctcta gtgagagcct gtggggggcg tatagctaaa tttcaccggc 3300 acaaaataaa cagggctaag ttattagaga aagcagccac ccttcctgag tttgtctctc 3360 atttgccaag acttgtctac aaggatagaa aaatgtaccg ccattatggt gtgcagtgtg 3420 gttccacagt cttccacatg gactcagaga acatccttga gtcagcatta aatggtgaag 3480 tcacaattaa gcaggagaag tggaatggca attggaaacc agcaggtgat cacatgcagt 3540 caacagccag catgtatctt aaatcacaga ctatgccaaa atttactttt tcaattgatg 3600 aaaattgtga aacctgggct agacatttgt tgggcgatta tggggaaaca caaggtcaga 3660 tttttaagga gaggcttatg tgggctgcag cccttggttt ttttatgaca atgaaaatca 3720 ctacagacca atcatttcca ggtaaagatg caatacacac agtcctcacc aaaatttcaa 3780 attttatttt tgggggcttg gaaaatgaag ttgtccgtgt tgtcatcagg actgtgattc 3840 gcattgtttg ttaccttatt ttgtatatac attctcccaa catagtcaca acagggactt 3900 tggttgcttt gttagcttta gatgccacca gtatgtcaat ggatcaagga ctcaaaactc 3960 tctgtatgag cctggtggat ggtgattttg gcaaattttg ttcagctttg ttagaaaaaa 4020 tacaaattgt tgacgaggct gatctaaaga aaactattcc aaaattcaat gatatgttag 4080 aggatcaatc tggcaaagcc acctctccca aatcttttaa tgattggaca acctgtgcca 4140 aaaatgtaca atggtggctt gaatcatttg tcaaagttgt aaattggctt aaagaaaaag 4200 tatttccttc aaaaactgac ccaactcttc agtggctcca ggaccatgaa gaacatatag 4260 ctatcatgtt ggcattgtgt gatgagcacc tctgtatgct aagaactgaa aaagattata 4320 tttgtgagca caacactcgc ccaaaacatc agcgtttggt tgaaatggtc tctggtacat 4380 tgaaccaact ccaaggtatt tcaagtgctc gtgaattggc agctagacta cagcatgtgc 4440 tgaacaaact ccaccaagtc aattttgaac ctgaactgga gtggacacac cgtcctgaac 4500 ctcttggtat atggatatct ggtggccctg gtgttgggaa gagtttttta tcaaattaca 4560 ttgttaaaga aatagccaaa ttaaagcatt ggaagagtta tgccaaccca actggaagta 4620 agcatatgga tgggtatgtg tcacaggaga ttcatgtttt tgatgatttt ggtcaaaatc 4680 gggaagaaga ggactattct ttaatctgta atcttatttc tagtgttcca tttattactc 4740 caaaagcaag tgtagaggct aagggcaccc aatacagagg acgccttgtt gtcgtcacaa 4800 ccaatagacg ggattttact tcctgtaagt tgactgaccc agatgcactg gaaaggcgct 4860 ttcctattcg ccttaatatc cggccattgc aaaagtataa tcacaagggc cgtttggatg 4920 tggcaacagc catgagagat ggaagcttgc agggaggaac ttgctgggaa agggatatag 4980 gccaattagg tcttgaatgt tggaatccca taaatggcca aatcttaatt gatgaaatta 5040 tgagtgagtt gcaggttagg caagaagtgg cttcctttat gaaccagtcc aaggtgaggc 5100 gtttttctga cccggagaca ctttttagtg atttggaaga tctaaaattg gaatttgatt 5160 ttgatcaatt ggagcaacaa gctaaacttt ttgcaaaacc aaaagaagga aaaatctcta 5220 aatttagggc ctgggttaga gactgtacag ggaagattaa gggttttctg gagcgaaatc 5280 gggcttggat tcttggtata ggaacccttg gaaccattat gtcacttgtg actatgtgtg 5340 tcccattagc tagacgcttt gcccagtcga tctattcaca acaacctgtg gccaaaacac 5400 tccctaaaga ttttaaggta gctgttaaga aacacattga aaaactagaa actgaattgg 5460 aagatcagag cgggcgggtg aattttagac atatttgtaa cagactcgtc aatgtgagta 5520 atgaggatga agtagccact ggtttagcca ttggtgggaa aaatgttttg acatttgggc 5580 attctaaatt tacacaattg gatgagatta gggacattca atttaatgcg ccagctaagg 5640 ggacccccat tacttatgat ggagaaccca ctgatctcca gttgttggaa tgtgacatac 5700 cccatcagtt taaagatgtg tctaaattga ttgccacaga ggactatcgc ggcaatggct 5760 ggttggtttg gaaagatcag gaccagtata tggtgcaaga tgtgacaaag attaggcctt 5820 ttggttccac aacaactgca tcaggcacga catcatgtca aacatacata tataattgca 5880 agactgggcc tggttcctgt ggtggtgtgc ttgtagctca aattggagga aatttgaaga 5940 tccttgggat acacacaagt ggcaatggca ctatgggagc agccaatagg gtctttccag 6000 tttttaatca aggcaaagta gtgagcaagc aatatgcagg gaagattctg taccatcaac 6060 cccgaaaaac tgcatatatg aagtcacctg tctatgagga ctcaccctat gagcctgctg 6120 tcctttccat caatgaccag cgacttggag tgaagattga agacatggct aagaaagcat 6180 ctgacaagta tattggcaat gtgtttcagc ctcctcctga ggctttccaa cttgcaaaga 6240 cacatgttgc cgaaaagctg tctagagtat tgggatgcca tgatactatc tcatatgagt 6300 cagctgtgag tagtgatgtt atacctatga actgggacac ttcacctggc attaagtata 6360 agggggagac taaacgacaa ctggtgctga agtcctcatt cagacaggat gttctgaagc 6420 aactacagag tccatccact gttttcactt gttatctgaa ggatgaactc cgaaagaagg 6480 agaaaatcaa ggaagggaaa acaagaggca ttgaggcttg taactttgat cacactgtgg 6540 cttatagaat ggtgatgggt gacatttttt ctaatatcta tgatgattct tttattatgt 6600 ctggctgtgc tgttggaatt aatccttttt gtgagtggga caatttgttg gcaaacctcc 6660 aaccttataa tttgtgtctt gacttttctg gattcgatgg ctctctgagt gcccaaattc 6720 ttgaagaagc agttgatgta ttgtcttatt ttcacaatga cccagcctta gtgaaaagaa 6780 ttcatgcacc aactatctat tcaactcatt atgtaactga tgagatatgg caggtagaag 6840 gagggatgtg ttcaggatct ccatgtacca ctgtggtcaa ttctattgtg aatcagcttg 6900 catgttacac cattttagct gtcttgggct atgacatcaa ccaatgttat gtcgttagtt 6960 atggggatga ttgtgttctg tcagtgccag aggtgcgcga tatctcaaaa ctatcgcact 7020 attttaagct tttctttggt atgacagcaa cagctagtga caaagaaagt gacataactt 7080 ggctagcccc tatggagata gaatttctga agagaactcc tgccttcctc ccagggaccc 7140 gcaaaattat tggtgtcctt gacaaagaag tcttggaagg gaagatacag tggtgcaagg 7200 gaccagaagc attcaaacag caacttgact ctttcttgct ggaagcagct ctgcatggag 7260 aagaatacta ccatgaggtg acatctaagc ttaaggcccg gtgccccgtt cttgacattc 7320 aaccttgggg tgtcgcgaaa ctcagagcat atacagcttg catgatgatc tgaacttttg 7380 gtctgcaggt accataaacc tgtttttcct gggttttagt gttgtgggat acccaggagt 7440 acacgtaaaa cacccactgg ctttggagct gtgccacatg acacctccca gcttgacagt 7500 gctgtcagaa actgttatat aggaataggc taaaactaat caatttaccc ccatgattgt 7560 ttaggtatta gttgttagta tttagtataa gacatttggt gatataaaga cctcacacaa 7620 tctccacttt ccgtgaggac cctaagccaa atgacttctt tttactttac tattccctac 7680 cttacct 7687 //