ID DQ144621; SV 1; circular; genomic DNA; STD; VRL; 2781 BP. XX AC DQ144621; XX DT 23-AUG-2005 (Rel. 84, Created) DT 26-JUL-2006 (Rel. 88, Last updated, Version 3) XX DE Tomato yellow leaf curl virus isolate 8-4/2004, complete genome. XX KW . XX OS Tomato yellow leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2781 RX DOI; 10.1111/j.1365-3059.2003.00908.x. RX AGRICOLA; IND43618662. RA Accotto G.P., Bragaloni M., Luison D., Davino S., Davino M.; RT "First report of Tomato yellow leaf curl virus (TYLCV) in Italy"; RL Plant Pathol. 52(6):799-799(2003). XX RN [2] RP 1-2781 RA Davino S., Napoli C., Davino M., Accotto G.P.; RT "Spread of Tomato yellow leaf curl virus in Sicily: Partial Displacement of RT Another Geminivirus Originally Present"; RL Eur. J. Plant Pathol. 114(3):293-299(2006). XX RN [3] RP 1-2781 RA Accotto G.P., Davino S., Napoli C.; RT ; RL Submitted (26-JUL-2005) to the INSDC. RL Istituto di Virologia Vegetale, Consiglio Nazionale delle Ricerche, Strada RL delle Cacce, 73, Torino 10135, Italy XX DR MD5; 8fdc3f7ff5706f0907623ff3d9ac93a5. DR EuropePMC; PMC2224568; 17977971. DR EuropePMC; PMC6362282; 30718735. XX FH Key Location/Qualifiers FH FT source 1..2781 FT /organism="Tomato yellow leaf curl virus" FT /host="Lycopersicon esculentum" FT /isolate="8-4/2004" FT /mol_type="genomic DNA" FT /country="Italy:Sicily" FT /note="infectious" FT /db_xref="taxon:10832" FT gene 155..505 FT /gene="V2" FT CDS 155..505 FT /codon_start=1 FT /gene="V2" FT /product="pre-coat protein" FT /db_xref="GOA:Q77PF9" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q77PF9" FT /protein_id="AAZ76097.1" FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLIRDL FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV FT PKAQNIQNVSKP" FT gene 315..1091 FT /gene="V1" FT CDS 315..1091 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:Q3YBR0" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q3YBR0" FT /protein_id="AAZ76098.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGNNPMDFGQVFNMFDN FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFKINSHVTYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN" FT gene complement(1088..1492) FT /gene="C3" FT CDS complement(1088..1492) FT /codon_start=1 FT /gene="C3" FT /product="C3" FT /db_xref="GOA:Q3YBQ9" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q3YBQ9" FT /protein_id="AAZ76101.1" FT /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDI FT ISIQIRFNHNIRKVLGIHKCFLNFRIWTTLQPQTGRFLRVFRYEVLKYLDSLGVISINN FT VIRAVDHVLYDVLENTINVTEAHDIKYKCY" FT gene complement(1233..1640) FT /gene="C2" FT CDS complement(1233..1640) FT /codon_start=1 FT /gene="C2" FT /product="C2" FT /db_xref="GOA:Q3YBQ8" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q3YBQ8" FT /protein_id="AAZ76100.1" FT /translation="MQPSSPSTNHCSQVSIKVQHKIAKKKPIRRKRVDLDCGCSYYLHL FT NCNNHGFTHRGTHHCSSGREWRFYLGDKQSPLFQDNRTQPAAISNEPRHHFHSDKIQPQ FT HQEGIGDSQMFSQLPNLDDITASDWSFLKSI" FT gene complement(1549..2622) FT /gene="C1" FT CDS complement(1549..2622) FT /codon_start=1 FT /gene="C1" FT /product="Rep" FT /db_xref="GOA:Q3YBQ7" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q3YBQ7" FT /protein_id="AAZ76099.1" FT /translation="MPRLFKIYAKNYFLTYPNCYLSKEEALSQLKNLETPTNKKYIKVC FT REFHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSAHFHPNIQAAKSSTDVKTYVEK FT DGEFIDFGVFQIDGRSARGGQQSANDAYAEALNSGSKSEALNILKEKAPKDYILQFHNL FT SSNLDRIFSPPLEVYVSPFLSSSFNQVPDELEEWVAENVVSSAARPWRPISIVIEGDSR FT TGKTMWARSLGPHNYLCGHLDLSPKVYNNDVWYNVIDDVDPHYLKHFKEFMGAQRDWQS FT NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPLFA FT SINQGPTQDSQEETNKA" FT gene complement(2178..2471) FT /gene="C4" FT CDS complement(2178..2471) FT /codon_start=1 FT /gene="C4" FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q3YBQ6" FT /protein_id="AAZ76102.1" FT /translation="MGNHISMCLSNSKANTNVKTNGSSTWYPQTGQHISIRTFRQLRAQ FT QMSRPTWRKTENSLILEFSKSMADQLEEVNNLPTTHMPKHSIQAVNPRPSIY" XX SQ Sequence 2781 BP; 758 A; 538 C; 605 G; 880 T; 0 other; taatattacc ggatggccgc gcattttcct tttatgtggt ccccacgagg gttatacaga 60 cgtcactgtc aaccaatcaa attgcatcct caaacgttag ataagtgttc atttgtcttt 120 atatacttgg tccccaagta ttttgtcttg caatatgtgg gaccctcttc taaatgaatt 180 tcctgaatct gttcacggat ttcgttgtat gttagctatt aaatatttgc agtccgttga 240 ggaaacttac gagcccaata cattgggcca cgatttaatt agggatctta tatctgttgt 300 aagggcccgt gactatgtcg aagcgacccg gcgatataat catttccacg cccgtctcga 360 aggttcgccg aaggctgaac ttcgacagcc catacagcag ccgtgctgct gtccccattg 420 tccaaggcac aaacaagcga cgatcatgga cgtacaggcc catgtaccga aagcccagaa 480 tatacagaat gtatcgaagc cctgatgttc cccgtggatg tgaaggccca tgtaaagtgc 540 agtcttatga gcaacgggat gatattaagc ataccggtat tgttcgttgt gtcagtgatg 600 ttactcgtgg atctggaatt actcacagag tgggtaagag gttctgtgtt aaatcgatat 660 attttttagg taaagtctgg atggatgaaa acatcaagaa gcagaatcac actaatcagg 720 tcatgttctt cttggtccgt gataggaggc cctatggaaa caacccaatg gattttggac 780 aggtttttaa tatgttcgat aatgagccca gtaccgcaac cgtgaagaat gatttgcggg 840 ataggtttca agtgatgagg aaatttcatg ctacagttat tggtgggccc tctggaatga 900 aggaacaggc attagttaag agatttttta aaattaacag tcatgtaact tataatcatc 960 aggaggcagc caagtatgag aaccatactg aaaacgcctt gttattgtat atggcatgta 1020 cgcatgcctc taatcctgtg tatgcaacta tgaaaatacg catctatttc tatgattcaa 1080 tatcaaatta ataacattta tattttatat catgagcttc tgttacattt attgtgtttt 1140 caagtacatc atacaataca tgatcaactg ctctgattac attgttaatg gaaattacac 1200 caagactatc taaatactta agaacttcat atctaaatac tcttaagaaa cgaccagtct 1260 gaggctgtaa tgtcgtccaa attcggaagt tgagaaaaca tttgtgaatc cccaatacct 1320 tcctgatgtt gtggttgaat cttatctgaa tggaaatgat gtcgtggttc attagaaatg 1380 gccgctggct gtgttctgtt atcttgaaat agaggggatt gtttatctcc cagataaaaa 1440 cgccattctc tgcctgagga gcagtgatga gttcccctgt gcgtgaatcc atgattgttg 1500 cagttgaggt ggaggtagta tgagcagcca cagtctaggt ctacacgctt acgccttatt 1560 ggtttcttct tggctatctt gtgttggacc ttgattgata cttgcgaaca gtggttcgta 1620 gagggtgacg aaggttgcat tcttgagagc ccaatttttc aaggatatgt ttttttcttc 1680 atctagatat tccctatatg aggaggtagg tcctggattg cagagaaaga tagtgggaat 1740 tcccccttta atttgaatgg gcttcccgta ctttgtgttg ctttgccagt ccctctgggc 1800 ccccatgaat tccttgaagt gctttaaata atgcgggtct acgtcatcaa tgacgttgta 1860 ccacacatcg ttattgtaca cctttgggct taggtctaga tgtccacata aataattatg 1920 tgggcctaga gacctggccc acattgtctt gcccgttctg ctatcaccct caatgacaat 1980 acttatgggt ctccatggcc gcgcagcgga agatacgacg ttctcggcga cccactcttc 2040 aagttcatct ggaacttgat taaaagaaga agaaagaaat ggagaaacat aaacttctaa 2100 aggaggacta aaaatcctat ctaaatttga acttaaatta tgaaattgta aaatatagtc 2160 ctttggggcc ttctctttta atatattgag ggcctcggat ttactgcctg aattgagtgc 2220 ttcggcatat gcgtcgttgg cagattgttg acctcctcta gctgatctgc catcgatttg 2280 gaaaactcca aaatcaatga attctccgtc tttctccacg taggtcttga catctgttga 2340 gctcttagct gcctgaatgt tcggatggaa atgtgctgac ctgtttgggg ataccaggtc 2400 gaagaaccgt tggtttttac attggtattt gccttcgaat tggataagca catggagatg 2460 tggttcccca ttctcgtgga attctctgca aactttgatg tattttttat ttgttggggt 2520 ttctaggttt tttaattggg aaagtgcttc ctctttagag agataacaat tgggatatgt 2580 caggaaataa tttttggcat atattttaaa taaacgaggc atgttgaaat gaatcggtgt 2640 ccctcaaagc tctatggcaa tcggtgtatt ggtgtcttac ttatacctgg acacctaatg 2700 gctatatggt aatttcataa atgtttattg caattcaaaa ttcaaacttc aaaaatcaaa 2760 tcattaaagc ggccatccgt a 2781 //