ID DQ091195; SV 2; linear; mRNA; STD; VRL; 2290 BP. XX AC DQ091195; XX DT 01-JAN-2006 (Rel. 86, Created) DT 07-APR-2010 (Rel. 104, Last updated, Version 4) XX DE Blackberry chlorotic ringspot virus movement protein and coat protein mRNA, DE complete cds. XX KW . XX OS Blackberry chlorotic ringspot virus OC Viruses; Riboviria; Bromoviridae; Ilarvirus. XX RN [1] RP 1-2290 RX DOI; 10.1111/j.1744-7348.2006.00078.x. RX AGRICOLA; IND43840778. RA Jones A.T., McGavin W.J., Gepp V., Zimmerman M.T., Scott S.W.; RT "Purification and properties of blackberry chlorotic ringspot, a new virus RT species in subgroup 1 of the genus Ilarvirus found naturally infecting RT blackberry in the UK"; RL Ann. Appl. Biol. 149(2):125-135(2006). XX RN [2] RP 1-2290 RX DOI; 10.1007/s00705-010-0601-8. RX PUBMED; 20195656. RA Tzanetakis I.E., Martin R.R., Scott S.W.; RT "Genomic sequences of blackberry chlorotic ringspot virus and strawberry RT necrotic shock virus and the phylogeny of viruses in subgroup 1 of the RT genus Ilarvirus"; RL Arch. Virol. 155(4):557-561(2010). XX RN [3] RP 1-2290 RA Jones A.T., McGavin W.J., Gepp V., Zimmerman M.T., Scott S.W.; RT ; RL Submitted (10-JUN-2005) to the INSDC. RL Dept of Entomology, Soils, and Plant Sciences, Clemson University, 118 Long RL Hall, Clemson, SC 29634-0315, USA XX RN [4] RC Sequence update by submitter RP 1-2290 RA Jones A.T., McGavin W.J., Gepp V., Zimmerman M.T., Scott S.W.; RT ; RL Submitted (15-MAY-2009) to the INSDC. RL Dept of Entomology, Soils, and Plant Sciences, Clemson University, 118 Long RL Hall, Clemson, SC 29634-0315, USA XX DR MD5; 8c23c85462b1c6f96cb5dec7419ca18b. XX CC On May 15, 2009 this sequence version replaced gi:71836083. XX FH Key Location/Qualifiers FH FT source 1..2290 FT /organism="Blackberry chlorotic ringspot virus" FT /segment="RNA 3" FT /host="Rubus sp." FT /mol_type="mRNA" FT /country="United Kingdom" FT /db_xref="taxon:339420" FT CDS 217..1116 FT /codon_start=1 FT /product="movement protein" FT /note="3A" FT /db_xref="GOA:Q2QF33" FT /db_xref="InterPro:IPR002538" FT /db_xref="UniProtKB/TrEMBL:Q2QF33" FT /protein_id="AAZ42393.1" FT /translation="MALTPKMTALTFSADDEASLEKAVTEALAGSMELNMGIRRCAAFP FT ATNTEAFLCELTTKETKTFVGKFTDKVRGRVFVEHAVIHSMYIPVILNTTDAIAELKIK FT NLATGDELYGGTKVNLNEAFILTMTWPRSLFADEVNKHKGLYLGGVVSCAPHVPKSAKI FT GMWYPMWTEKVSAKQLYQDTAKITNTRALEAYTRTMISSDKEMRSLLRSRASIDIAAKT FT KENPVLCSQYVNLLDQRVEGVDFTVKQIKPAKADSLQIEEDSSSETVVLKPKLVSNDSA FT AVDVDKPSVPASRNLLIA" FT CDS 1252..1989 FT /codon_start=1 FT /product="coat protein" FT /note="capsid protein" FT /db_xref="GOA:Q2QF32" FT /db_xref="InterPro:IPR002681" FT /db_xref="InterPro:IPR016405" FT /db_xref="UniProtKB/TrEMBL:Q2QF32" FT /protein_id="AAZ42394.1" FT /translation="MSTLTKNPDQPSNAMSANRGRNGISNSNRGCPNCFDNLDAAASNC FT TRCNPAVSNRQRRNARRAANFRNQRKFDGLRALQAPVPLPVVPVPQPATQRNLRLPNGQ FT VWVTRKPTDWAAKVNDANDAMLLKTIFDGITEIKPDTKVFRVLIGFVAMSDGTFGLVDG FT VTGDTVPELPIIGRWSFQRDVYRSRDIGLDGQPADQLSEKAVVWCLNTNKRAEKRVRLA FT DFWVAIAKPKPLMPPPDFLVEDN" XX SQ Sequence 2290 BP; 632 A; 473 C; 553 G; 632 T; 0 other; gtattctctg agcataatac cacttactct aaacaactcc gaatcggacg atttccaact 60 ttgaattcct acaagttgag gtctttggac cggttgttta ggtttgtcaa ttagatacca 120 ctgaccgatc gaaggatctt ccgattaaac gttttcccaa acgtcggttg ctgttgggat 180 cgattggtta ggaccgtcat ttcagaaaag gttgaaatgg ctttgacccc aaagatgact 240 gcgcttacat tctcagctga cgatgaagcg tcactggaga aggctgtcac agaagctctc 300 gctggttcga tggagctcaa tatgggtata aggcgatgtg ctgcttttcc ggccaccaac 360 actgaagcgt ttctttgtga attaacaacc aaagaaacga aaacctttgt cggtaaattt 420 actgataagg tgcgtgggcg agtttttgtc gaacacgctg ttatacattc gatgtatatt 480 ccagtgattt tgaataccac cgatgctata gctgaattaa agattaaaaa tttagctacc 540 ggtgatgaac tctacggtgg aaccaaggta aatttaaacg aggcgttcat attaactatg 600 acatggcctc gatcattgtt cgcggatgag gttaataagc ataaagggct ctacttaggt 660 ggagtggttt cctgtgctcc tcacgttccg aagtccgcaa aaattgggat gtggtacccc 720 atgtggactg aaaaagtctc tgccaagcag ctgtatcaag atacagcaaa aattacaaat 780 actagggcat tggaggctta cactcgaaca atgataagca gcgataaaga aatgcgtagc 840 ctattgagaa gtcgtgcctc aatagatatt gccgccaaga caaaagagaa tcccgtgctg 900 tgctcacagt acgttaattt gcttgatcaa agagttgaag gtgttgattt taccgtcaag 960 caaattaaac cagcaaaggc tgattccctt cagattgagg aggattccag cagtgagact 1020 gtagttttga aacctaaatt ggtttctaac gatagtgctg ctgtcgatgt tgacaagcca 1080 tctgtcccag caagtaggaa cttgctgatt gcctgattgt tgttgataga ttaccatttc 1140 cagacatggg gagttcttag aaaagggggg agtacctcgg agtgactcga gtattaagtt 1200 agtgaattct ttaatgaaag ataagctgct tcttgagctt acctgagatg tatgagtact 1260 ttgactaaga atccagacca accatccaac gccatgtctg caaacagggg aagaaatggt 1320 atttccaaca gcaacagagg ttgcccaaat tgttttgaca atttggatgc cgctgcttct 1380 aattgcacgc gatgtaatcc cgcagtgtcc aaccgccagc gtcgtaacgc taggcgagcc 1440 gcaaatttcc gcaatcagcg gaaatttgac gggttgagag ctttgcaggc tccagttcca 1500 ttacctgtgg taccagtacc acaacctgct acacagcgca atttgcgctt accgaatggt 1560 caggtctggg taaccagaaa accgaccgat tgggcagcca aggttaatga tgccaatgac 1620 gcgatgttat tgaagaccat ttttgatggt ataaccgaaa tcaaaccgga cactaaggtg 1680 ttccgtgttc ttattggttt cgtcgccatg tctgatggga catttgggct tgtggatggg 1740 gttaccggtg atactgttcc tgaactacct attattggta gatggagttt ccaaagggac 1800 gtataccgaa gccgagatat tgggctcgat ggacaacctg ctgatcagct atcagagaaa 1860 gctgtggtat ggtgcctcaa cactaacaaa cgtgctgaga agcgggtaag attggctgac 1920 ttttgggtcg ccattgctaa accgaagccg ttaatgcccc ctccagattt tctggttgag 1980 gacaattgac tggttaatta cctcgaagaa aacttcgagg tgcctcacat tttaccgact 2040 attgttggtt catgtgtgag atgcggattc cgcccacgga gagtgccaga cgcacgctat 2100 ttgtggtgtg gcatgtgcaa atatttgcac tatgcatagt tacctcgcat ccgggtataa 2160 atctatgaat ttcgctagaa cattccgaat cggacgattt ccacctgaaa aggtgagacc 2220 tttgggtcga tgttctaatg gttccgttaa taatattgat tattaacgat gcctccaatt 2280 aaagagatgc 2290 //