ID D26572; SV 1; linear; genomic RNA; STD; VRL; 2789 BP. XX AC D26572; XX DT 29-JUL-1994 (Rel. 40, Created) DT 17-APR-2005 (Rel. 83, Last updated, Version 9) XX DE African horse sickness virus 4 VP3 gene for core protein, complete cds. XX KW . XX OS African horse sickness virus 4 OC Viruses; Riboviria; Reoviridae; Sedoreovirinae; Orbivirus. XX RN [1] RP 1-2789 RA Fukusho A.; RT ; RL Submitted (21-JAN-1994) to the INSDC. RL Akio Fukusho, National Institute of Animal Health; 6-20-1 Josui-Honcho, RL Kodaira, Tokyo 187, Japan (Tel:81-423-21-1441, Fax:81-423-25-5122) XX RN [2] RP 1-2789 RX DOI; 10.1007/BF01538819. RX PUBMED; 8002793. RA Sakamoto K., Punyahotra R., Mizukoshi N., Ueda S., Imagawa H., Sugiura T., RA Kamada M., Fukusho A.; RT "Rapid detection of African horsesickness virus by the reverse RT transcriptase polymerase chain reaction (RT-PCR) using the amplimer for RT segment 3 (VP3 gene)"; RL Arch. Virol. 136(1-2):87-97(1994). XX DR MD5; 9f81641988aa1c6dd837d6dd89b8ed51. XX FH Key Location/Qualifiers FH FT source 1..2789 FT /organism="African horse sickness virus 4" FT /segment="3" FT /serotype="4" FT /mol_type="genomic RNA" FT /clone="pAH4.3-KS" FT /db_xref="taxon:36421" FT CDS 27..2741 FT /codon_start=1 FT /gene="VP3" FT /product="core protein" FT /db_xref="GOA:P32509" FT /db_xref="InterPro:IPR002614" FT /db_xref="InterPro:IPR016029" FT /db_xref="UniProtKB/Swiss-Prot:P32509" FT /protein_id="BAA05621.1" FT /translation="MQGNERIQDKNEKEKAYAPYLDGASVSTDNGPILSVFALQEIMQK FT IRQNQSDMAAHAPDVDGAIPEVMTIISGIKGLLEEKDYKVINAPPNSFRTIPMQSTEYV FT LQVNTFYERMSEIGGPIDETDPIGFYALILEKLKFLKSEGAFILQGIATKDYRGAEIAD FT PEIIGVSFQNALSHLAAIDRQIIQDTLNGMIIENGLVADRNVDVFRAAMSDPIYRIHNV FT LQGYIEGIQYGELRESVNWLMRLGLRKRIEFANDFLTDFRRADTIWIISQRLPINANVI FT WNVPRCHIANLITNVALCLPTGEYLMPNPRINSITITQRITQTNPFSIISGLTPTAVQM FT NDVRKIYLALMFPNQIILDIKPDSSHAVDPVLRMVAGVLGHVMFTYGPIMTNITPTMAE FT LLDRALSDYLLYMYNNRIPINYGPTGQPLDFRIGARNQYDCNAFRATHKRVGLQRVGVV FT DVQRVQPSPYDHVQRVIRYCDIDSREIIDPRTYGMNMTYPIFREMLRMLVAAGKDQEAA FT YLRQMLPFHMIRFARINQIINEDLLSAFSLPDQNFDVVLHNFIQGNFGETDPVVLEVSW FT ASIWFAFVRRFEPIARSDLLEAAPLIEARYAAELSTMQMDVQQLRMMRARVPDTVINAT FT PSQCWKAVLKNAPEPIKNLMNLSHSFSFVNVRDIVRWSQQRDIQESLAYVLNREAWAIA FT NDFEDLMLVDHVYIQRTMLPEPRLDDINEFRRQGFFYTNMIDGAPPIGDVTHYTYAIAN FT LQANMGQFRAAIRRTLDDNGWIQFGGMLRNIKIKFFDSRPPDEILTAMPYVYTEEERDG FT VRMVAFKYATTATAYFLLYNVAYSNTPDTLITVNPTFTMTKIHMRKKIVRRVRAPDVVS FT QVNKRLVAYKGKMRLMDVTKCLKTGVQLARPTI" XX SQ Sequence 2789 BP; 836 A; 514 C; 688 G; 751 T; 0 other; gtttattttc tgctgtgaac tccagaatgc aagggaatga aagaatacaa gataaaaatg 60 agaaggagaa ggcgtatgca ccatatcttg acggagcgag cgtatcaacg gataatgggc 120 ccattttatc agtgtttgcc ttacaggaaa tcatgcaaaa aattaggcaa aatcagagcg 180 atatggctgc acatgctccc gatgttgatg gggcgatacc agaggtaatg actataatca 240 gtggaattaa gggattgctg gaagaaaagg attacaaagt gataaacgcg cctccgaatt 300 cttttcgcac gatcccgatg caaagtacgg agtatgtttt gcaagtgaac acgttttatg 360 agaggatgtc agaaattgga gggccgatcg atgagacgga tcctattgga ttttatgcat 420 tgatactgga gaaattgaaa tttctgaaat ccgagggggc tttcatctta caggggatag 480 ctactaaaga ttataggggc gcagagattg ctgatccaga gataatcggg gttagtttcc 540 aaaatgcgtt gagtcatttg gcagcaatag atcgtcaaat catacaggat actctcaatg 600 ggatgatcat tgaaaacgga ctagtggcag atagaaatgt ggacgtgttt agagcagcga 660 tgtcggaccc aatctatcgg atacacaatg tattacaagg atatattgaa ggtatacaat 720 atggggagtt gcgtgaatca gtcaattggt tgatgaggct tggactaagg aagagaatcg 780 agttcgccaa cgatttcttg actgatttca gacgcgcaga cactatttgg ataatatcac 840 aaaggttacc gattaatgct aatgtaattt ggaatgttcc aagatgccat atagcaaatc 900 taatcacaaa tgtcgcgtta tgcttaccaa ccggagagta tttgatgccc aacccaagaa 960 ttaattcgat cacaatcaca cagcgtatca ctcagactaa ccctttttca ataatttcag 1020 ggttaacccc gacagcggtt cagatgaatg atgttagaaa aatatatctt gcgttgatgt 1080 ttcccaacca aattattctg gatataaaac cagacagctc gcatgcggta gatccagttt 1140 tgcgaatggt cgcgggagta ttgggccatg taatgtttac ttacggaccg atcatgacaa 1200 acataactcc aacgatggct gaattgcttg atcgtgcgct gagcgattat ttattgtaca 1260 tgtataacaa tcggattccg ataaattacg gtccaacagg tcaaccccta gattttcgca 1320 ttggagcaag aaatcagtat gattgtaatg ctttccgagc gacccacaaa cgggtcgggt 1380 tacaacgggt gggggtagtt gatgttcaga gagtccagcc gagtccatat gatcatgttc 1440 agcgtgtaat ccgttactgt gacattgatt caagggagat catagatcca agaacttatg 1500 ggatgaatat gacatatcca atatttcggg aaatgcttag aatgctagta gctgcgggaa 1560 aagatcaaga agcagcttat ttgagacaga tgctgccttt tcatatgatt cgttttgcgc 1620 gaataaatca aattataaat gaagatttgc tcagtgcttt ctctttgccg gatcaaaatt 1680 tcgatgtggt cctacacaac ttcatacaag gtaatttcgg agaaacagac ccggtagttt 1740 tggaggtgag ttgggcttcg atctggttcg ccttcgtgag gcgttttgag cccatcgccc 1800 gttcagattt acttgaggcg gctcctctga ttgaagctag atatgcagct gaattatcca 1860 cgatgcagat ggatgtacag cagctgagga tgatgcgagc tagagttccg gacactgtga 1920 ttaatgcgac gccaagtcaa tgctggaaag cagttttgaa gaatgcgcca gagccaatta 1980 aaaatttaat gaacttgtct cattctttca gttttgtgaa tgtacgagat attgtaaggt 2040 ggagtcaaca gagggacatt caggagtcgt tagcatatgt cttgaatagg gaagcttggg 2100 cgatcgctaa tgactttgaa gatttgatgc tagtggatca cgtgtatata cagcgtacga 2160 tgttacctga acctagatta gacgatatca acgagttcag gcggcaagga ttcttctata 2220 cgaatatgat cgatggagcg ccaccaattg gagatgttac tcactacacc tatgcgattg 2280 caaatctaca ggcgaatatg ggacagttca gagcagcgat caggcgtaca ctggatgata 2340 acggttggat tcagttcggt ggtatgttac ggaatatcaa gattaaattt tttgattcgc 2400 ggccgcccga tgagatactg acggcaatgc cttatgtgta cacagaggag gagagggatg 2460 gagtgaggat ggtcgctttt aaatacgcaa caaccgcgac tgcctacttc ttattgtata 2520 acgttgcgta ttcaaatacg ccagatactt tgatcacagt gaacccaaca tttacgatga 2580 cgaagattca tatgcggaag aaaattgtca gacgagttcg cgctccagat gtcgtatcgc 2640 aggttaacaa acgtttagtc gcgtacaaag gtaagatgcg tttaatggat gtaacgaaat 2700 gcctaaagac tggagttcaa ctcgcgcgac caacgattta gcagcctgac cacctggtga 2760 atcgttctag cgggcagaat tacacttac 2789 //