ID D16681; SV 1; linear; genomic RNA; STD; VRL; 6496 BP. XX AC D16681; XX DT 27-OCT-1995 (Rel. 45, Created) DT 22-FEB-2008 (Rel. 94, Last updated, Version 3) XX DE Citrus tatter leaf virus genes for 242 kDa protein, 36 kDa protein, DE complete cds. XX KW . XX OS Citrus tatter leaf virus OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Trivirinae; OC Capillovirus. XX RN [1] RP 1-6496 RA Namba S.; RT ; RL Submitted (14-JUL-1993) to the INSDC. RL Contact:Shigetou Namba Univ. of Tokyo, Experimental Farm, Faculty of RL Agriculture; 1-1-1 Midori-cho, Tanashi, Tokyo 188, Japan XX RN [2] RX PUBMED; 7561769. RA Ohira K., Ito T., Kawai A., Namba S., Tsuchizaki T.; RT "Complete sequence of an infectious full length cdna clone of citrus tatter RT leaf capillovirus; comparative sequence analysis of capillovirus genomes"; RL J. Gen. Virol. 76:2305-2309(1995). XX DR MD5; 5675cfe9ac562ec57549302e95eea662. XX FH Key Location/Qualifiers FH FT source 1..6496 FT /organism="Citrus tatter leaf virus" FT /strain="CTLV lily" FT /mol_type="genomic RNA" FT /db_xref="taxon:33759" FT CDS 36..6353 FT /codon_start=1 FT /transl_table=1 FT /product="242 kDa protein" FT /note="ORF1" FT /note="viral polymerase protein" FT /db_xref="GOA:B0VX54" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008745" FT /db_xref="InterPro:IPR008879" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:B0VX54" FT /protein_id="BAG11544.1" FT /translation="MAFTYRNPLEIAINKLPSKQSDQLLSLTTDEIEKTLEVTNRFFSF FT SITPEDQELLTKHGLTLAPIGFRSHSHPISKMIENHLLYICIPGLLSSFRSVAFFSLRK FT NKVDNFLQMHSVFSHGKIKSLGMYNAIIDGKDKYRYGEVSFTSFRDRVIGLRNQCLTRN FT KFPMVLFLHDELHFLSPFDMAFLFETIPEIDRVVATTVFPIELLFGDKVSKEPRVYTYK FT VHGSSFSFYPDGVASECYEQNLANSKWPFTCSGIQWANRKIRVTKLQSLFAHHVFSFDR FT GRACNEFNHFNKPSCLLADEMRLLTKRFDSAVINRSTVSSLSTYMACLKTANAASAVAK FT LRQLEKRDLYPDELNFVYSFGEDFKNFGMRDDFDVSVLQWVKDKFCQVMPHFIAASFFE FT PTEFHLNMRKLLNDLATKGIEVPLSVIIVDNVNFIETRFHARMFDIAQAIGVNLNLLGR FT RFDYDTESEEYFSENGYVLMPSKSNPDRNWILNSGSLKIDYSRLIKARRFRLRRDFLDL FT ISRGDAPRRQLFLESTSDPKSNPEVPESDATGEAGLSVNDESCQSPKEFCAPMSTEDGQ FT PFEGSIPIDLINCFEPEEVKCPRRKRKNDCVFRAISAHLGIETQDLLNFLVNEDISEEL FT LDCIDEDKGLSHEMIEEVLITKGLSMVYTSDFKEMAVLNRKYGVNGKMYCTIKGNHCEL FT SSKECFVRLLKEGGEAQMSNENLNADSMFDLGKFVHNRERAVKLAKSMARGTTGLLSSF FT DPAFCKSMVTLSELFPENFSSTVGLRLGFAGSGKTHKVLQWINYTPSVKRMFISPRRML FT ADEVEVQLKGTACQVHTWETALKKIDGTFMEVFIDEIGLYPPGYLTLLQMCAFRKIVKG FT QSERILKGKLSELSKTCLNMRCFGDPLQLRYYSAEDTNLLDKTHELDILTKTIKHKYLL FT QGYRFGQWFQELINMPTRVDDSKFSRKFFADISSVKTEDYGLILVAKREDKGVFAGRIP FT VATVSESQGMTISKRVLICLDQNLFAGGANAAIVAITRSKVGFDFILKGNSLKEVQKMA FT QKTIWQFVIEGKSIPMERIVNMNPGASFYESPLDVGNSSIQDKASHDLFIMPFINLAEE FT EVDPEEVLGDVIQPVEWFKCHIPVFDRDPMLAEIFDKVAAKEKREVSSILGLSNQFLDM FT EKNGCKIDILPFARQNVFPHHQSSDDVTFWAGVQKRIRKSNWRREKTKFEEFESQGKEL FT LQEFISMLPFEFKVNIKDIEDGEKSFLEKRKLKSEKMWANHSERSDIDWKLDHAFLFMK FT SQYCTKEGKMFTEAKAGQTLACFQHIVLFRFGPMLRAIESAFLRSCGDSYYIHSGKNFF FT CLDSFVTRNAHVFDGFSIESDYTAFDSSQDHVILAFEMALLQYLGVSKEFQLDYLRLKL FT TLGCRLGSLAIMRFTGEFCTFLFNTFANMLFTQLKYKIDPRKHRILFAGDDMCSLSSLK FT RRRGERATRLMGSFSLTAVEEVRKFPMFCGWYLSPYGIIKSPKLLWARIKMMSERQLLK FT ECVDNYLFEAIFAYRLGERLYTILKEEDFEYHYLVIRFFVRNSKLLTGLSKSLIFEIGE FT GIGSEWRSSMSTISSRRSSQQTSRLTQSHPQNFTKMQPFSSRMCSIVSKDLSQMSKFPP FT GLGMDWSCQISSCLMTLKSTQSEKRATSTSTCITESFWLESKQCCQTSEVWKEGSLCMT FT EPVLIRKKAIYARICLSLSLTAVTSVLDLNTAYPPQMPTWRRDSDFVWTFTAHSMNRTL FT SCLLLTLVWPTDVLIQPASWKPRLETQGGPRRLLVAVRHSDLMKKLKWQFWTISLHYFW FT RKVFQMFILKRGCSEVTRLEGHARFLQKGGQTRNRRKREDLGPSQLELKDSEKMSLEDV FT LQQARRHRVGVYLWKTHIDPAKELLTVPPPEGFKEGESFEGKELYLLLCNHYCKYLFGN FT IAVFGSSDKTQFPAVGFDTPPVHYNLTTTPKEGETEEQKKAREGSSGEKTKIWRIDLSN FT VVPELKTFAATSRQNSLNECTFRKLCEPFADLAREFLHERWSKGLATNIYKKWPKAFEK FT SPWVAFDFATGLKMNRLTPDEKQVIDRMTKRLFRTEGQKGVFEAGSESNLELEG" FT CDS 4787..5749 FT /codon_start=1 FT /transl_table=1 FT /product="36 kDa protein" FT /note="ORF2" FT /note="viral polymerase protein" FT /db_xref="GOA:P87586" FT /db_xref="InterPro:IPR001815" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:P87586" FT /protein_id="BAG11545.1" FT /translation="MAIVNVNHFLKEVESTDLKIDAISSSELYKDATFFKPDVLNCIKR FT FESNVKVSSRSGDGLVLSDFKLLDDTEIDSIRKKSNKYKYLHYGVILVGIKAMLPNFRG FT MEGRVIVYDGACLDPEKGHICSYLFKFESDCCYFGLRPEHCLSTTDANLAKRFRFRVDF FT HCPQYEQDTELFALDIGVAYRCVNSARFLETKTGDSGWASQAISGCEALRFNEEIKMAI FT LDHKSPLFLEEGVPNVHIEKRLFRGDKIRRSRSISAKRGPNSKPQEKRGFRSLSARIER FT FGENEFGRRASTSEAPPGRSVSLEDTYRPGKGTSDGSSP" XX SQ Sequence 6496 BP; 1933 A; 1235 C; 1505 G; 1823 T; 0 other; aatttaacag cgcttaattt ccgcgcttta cgtcaatggc tttcacttac agaaatccgc 60 tagaaattgc aatcaacaaa cttccaagca agcaatctga tcaattgctt tccttgacca 120 cagacgagat tgaaaagacc ttagaagtga caaatcgctt cttctctttt tcaatcaccc 180 cagaagatca agaattgttg accaaacatg gtctaacact tgcgcctatc ggattcagat 240 cacattccca tccaatatcc aaaatgatag aaaatcatct cttgtacata tgtattcctg 300 gtcttctatc ttctttcagg tcagttgcct tcttctccct tagaaagaac aaagttgata 360 atttccttca aatgcattct gtattttcac acggaaaaat taaatctttg ggaatgtaca 420 atgcaataat tgacgggaag gacaagtata ggtatggtga ggtctctttc acctctttca 480 gagatagagt gataggtctt agaaatcaat gccttacgcg taataaattt ccaatggtgt 540 tattccttca tgacgaattg cactttctta gcccctttga tatggctttt ttatttgaaa 600 caattccaga aatagacaga gttgttgcaa ccacagtatt tccgattgaa ttgttatttg 660 gggacaaggt ctctaaggag cctagagttt atacctataa ggttcatgga tcttcctttt 720 cattttaccc tgacggtgta gcctctgaat gttatgaaca aaatttggcg aattcgaaat 780 ggcctttcac ctgtagtggc attcaatggg ccaataggaa gataagggtg accaagttgc 840 agagcttgtt tgctcaccat gttttttcat ttgacagagg cagggcctgc aatgaattca 900 accatttcaa taagccaagc tgcctgctcg cagatgaaat gcgtcttttg acaaaaaggt 960 tcgattctgc agtcatcaat cggagtacag tttcctctct cagcacttac atggcttgcc 1020 tcaaaactgc gaacgcagct tcagcagttg ctaaattgag acagttggag aagagagacc 1080 tctatccaga tgagctgaac tttgtttact ctttcgggga agatttcaag aattttggga 1140 tgagagatga ctttgacgtg tcagttctcc aatgggttaa agacaaattt tgtcaagtta 1200 tgcctcactt cattgctgct agtttctttg agccaacaga gtttcacctc aacatgcgaa 1260 aattattaaa tgacctggcc actaagggga tagaggttcc actatccgtc attatcgtag 1320 acaatgtcaa ttttattgaa accaggttcc atgccaggat gtttgacatc gcgcaggcta 1380 ttggggttaa cttgaactta cttgggcgca gatttgacta cgacactgaa agtgaggaat 1440 atttttcaga aaatggctat gtcttaatgc cttctaaatc gaatccagac aggaattgga 1500 ttctgaactc tggctcttta aagattgact actctagatt gatcaaggcc aggagattca 1560 gattgaggag agattttctg gatctcatat ctagaggtga tgctcccagg aggcaactct 1620 tcttagaatc aaccagtgac cccaagtcaa atcctgaggt ccccgagagt gatgcaactg 1680 gagaggcagg attatcagtg aatgacgaga gctgccagtc gccaaaggag ttttgtgcgc 1740 caatgtccac agaggacggc caacctttcg aaggctcaat cccgattgat ttaatcaatt 1800 gctttgaacc ggaagaagtt aaatgcccaa gaaggaagag gaagaatgat tgcgttttta 1860 gggctatttc tgcacacttg ggaattgaaa cccaagactt gttgaatttc ctcgttaatg 1920 aggacatatc tgaagaacta ttggactgca ttgatgaaga caaagggctc tcacatgaaa 1980 tgattgaaga agtattaatc acgaaaggtc tttcaatggt ttatacttca gactttaaag 2040 agatggcagt ccttaacaga aaatatggtg tgaatggtaa aatgtactgc accattaaag 2100 gcaaccactg tgaattgagc tcaaaagaat gttttgtcag actgttaaag gaaggtggtg 2160 aagctcaaat gtcaaatgag aacttgaatg ccgactccat gtttgacctt gggaaatttg 2220 tgcataacag ggagagagcc gttaaattgg caaaatcaat ggcgaggggt accacaggtc 2280 ttttgagttc ctttgatccg gccttctgca agagcatggt cactctttca gagttgtttc 2340 ctgagaactt ttcatctact gttgggctaa gattgggatt tgctggttca ggaaagaccc 2400 acaaagtgct ccaatggatc aactacacac caagtgtcaa aagaatgttc ataagtccaa 2460 gaaggatgct agctgatgaa gttgaggtcc agcttaaagg gacagcctgt caagtgcaca 2520 cttgggagac cgctttgaag aagattgatg gaaccttcat ggaggttttt attgatgaaa 2580 taggtttgta cccacctgga tacctcacat tgttacaaat gtgtgctttt aggaagattg 2640 tcaaaggaca gagtgagagg atcttgaaag gtaaactcag tgaactgtca aaaacttgtc 2700 tgaacatgag gtgttttggt gacccattac aattgagata ctactctgct gaggacacaa 2760 atcttctgga caaaacacat gagctcgaca ttttgactaa gacaatcaag cacaaatacc 2820 ttcttcaggg gtacagattt ggccaatggt ttcaagaact cataaacatg ccaaccaggg 2880 tggatgactc aaagttctca agaaagttct ttgcggacat ctccagtgtc aagactgaag 2940 attacgggct cattcttgtt gccaaaaggg aggacaaagg cgtttttgct gggaggatcc 3000 cagtggccac agttagcgag tctcaaggga tgacaataag caaaagagta ttgatatgtc 3060 tggatcaaaa cctctttgct ggaggggcca atgctgccat tgttgcaatc acaaggtcga 3120 aagttgggtt tgactttatc ctcaagggga actcactgaa ggaagtgcag aagatggccc 3180 aaaaaaccat ttggcaattc gtcattgagg gcaaatctat cccaatggag agaatagtca 3240 acatgaatcc tggagccagc ttctatgaaa gccccttaga cgttggaaat tcgtctattc 3300 aagacaaagc ttctcatgat ttgtttataa tgccttttat aaatttggct gaggaagagg 3360 ttgacccaga ggaagttctt ggggacgtga tacagcctgt tgaatggttt aaatgccaca 3420 tacctgtctt tgatagagat ccaatgctag cagagatatt cgataaagta gccgcaaaag 3480 aaaagagaga ggtttcatct atattgggtc tctcaaatca atttttggac atggaaaaaa 3540 acgggtgcaa aattgacata cttccttttg ctaggcaaaa tgtttttcca catcatcagt 3600 cctcagatga tgttactttt tgggcaggtg ttcaaaagag gataaggaag tccaattgga 3660 ggcgtgaaaa aacaaaattt gaagaatttg agagtcaggg gaaagaactg ctccaagagt 3720 ttatctcgat gttgcccttt gaattcaagg ttaacattaa agacattgaa gatggagaaa 3780 aaagcttcct agaaaaaagg aaattgaagt cagaaaaaat gtgggcgaat cattcagaaa 3840 ggtctgacat cgactggaag cttgaccatg ccttcctctt tatgaaatca cagtattgca 3900 cgaaggaagg gaagatgttc accgaggcga aagccggcca aactttggcc tgcttccaac 3960 atattgtctt gttcagattc ggacccatgc tcagagcaat tgagagcgcc tttttaagga 4020 gctgtgggga ttcatactac atacactccg gaaaaaactt tttctgtctg gacagctttg 4080 taacgagaaa tgcacatgtt tttgatggat tctcaataga gtccgactac actgctttcg 4140 attcatccca ggaccacgtc attttggcct tcgagatggc actattgcaa tatttgggtg 4200 tatccaaaga atttcagctt gactatctga ggttgaagtt aactcttggt tgtcgacttg 4260 ggtcattagc aataatgaga ttcaccgggg aattttgcac ctttctgttc aacacatttg 4320 ccaacatgct tttcactcag ttgaagtaca aaatagaccc acggaaacat aggatcttat 4380 tcgcagggga tgacatgtgc tccctgagct ctctcaagag gagaagagga gaaagagcaa 4440 caaggttgat gggaagcttt tccctaactg cggtggagga agtgaggaaa ttccctatgt 4500 tctgtggatg gtatttgagt ccatatggaa tcatcaaatc tccaaaattg ttatgggcca 4560 ggattaagat gatgagtgaa agacagctcc tgaaagaatg cgttgacaac tatctgtttg 4620 aggcaatatt tgcctacagg ttaggtgaga ggctgtacac aattttgaaa gaagaagact 4680 tcgaatatca ttatcttgtt ataagattct ttgtcaggaa ttcgaagcta ctaacgggtt 4740 taagtaagag cttgattttc gaaattggag aaggaattgg gtctgaatgg cgatcgtcaa 4800 tgtcaaccat ttcctcaagg aggtcgagtc aacagacctc aagattgacg caatctcatc 4860 ctcagaactt tacaaagatg caaccttttt caagccggat gtgctcaatt gtatcaaaag 4920 atttgagtca aatgtcaaag tttcctccag gtctggggat ggactggtct tgtcagattt 4980 caagttgctt gatgacactg aaatcgactc aatcagaaaa aagagcaaca agtacaagta 5040 cttgcattac ggagtcattc tggttggaat caaagcaatg ctgccaaact tcagaggtat 5100 ggaaggaagg gtcattgtgt atgacggagc ctgtcttgat ccggaaaaag gccatatatg 5160 ctcgtatttg tttaagtttg agtctgactg ctgttacttc ggtcttagac ctgaacactg 5220 cttatccacc acagatgcca acctggcgaa gagattcaga tttcgtgtgg actttcactg 5280 cccacagtat gaacaggaca ctgagttgtt tgctcttgac attggtgtgg cctacagatg 5340 tgttaattca gcccgcttct tggaaaccaa gactggagac tcagggtggg cctcgcaggc 5400 tattagtggc tgtgaggcac tcagatttaa tgaagaaatt aaaatggcaa ttttggacca 5460 taagtctcca ttatttctgg aggaaggtgt tccaaatgtt catattgaaa agaggctgtt 5520 cagaggtgac aagattagaa ggtcacgctc gatttctgca aaaagggggc caaactcgaa 5580 accgcaggaa aagagaggat ttaggtccct ctcagctaga attgaaagat tcggagaaaa 5640 tgagtttgga agacgtgctt caacaagcga ggcgccaccg ggtaggagtg tatctttgga 5700 agacacatat agacccggca aaggaacttc tgacggttcc tccccctgaa gggtttaagg 5760 aaggtgaaag ctttgaaggc aaggagcttt accttcttct ttgcaaccat tattgtaaat 5820 acttatttgg taatattgct gttttcgggt catctgataa gacccagttc cctgctgttg 5880 gatttgatac ccctccggtt cattacaatt tgacaacgac cccaaaagaa ggggaaactg 5940 aagagcaaaa gaaggccaga gagggttcgt ctggcgaaaa aacaaaaatt tggagaatcg 6000 acttgtcaaa tgttgtacct gaattgaaaa cctttgctgc cacttctagg cagaactctt 6060 tgaatgaatg tacattcaga aagctttgtg agccattcgc tgatttggcc cgtgagtttc 6120 ttcatgaaag gtggtcaaaa ggattggcca ctaacattta taagaaatgg cccaaagctt 6180 ttgaaaaaag cccttgggtg gcatttgatt ttgccaccgg tctaaaaatg aatcgtttaa 6240 cacctgatga gaaacaggtg atcgacagga tgaccaaaag gctttttcgt actgaaggac 6300 aaaaaggggt tttcgaggca ggttcggaga gtaatctgga actggagggt taggagtcgt 6360 gtgaaattcc gcaaatttgg tcgcggtctt gcaggttgac atgcctgcct ttatacttaa 6420 ataaagggtt cacccggttt tctgtgcatt tccgggttag tgtggttttt ctagagtcta 6480 gagtttgtcc actcta 6496 //