ID D01091; SV 1; linear; genomic RNA; STD; VRL; 7632 BP. XX AC D01091; XX DT 05-AUG-1992 (Rel. 33, Created) DT 07-DEC-2007 (Rel. 94, Last updated, Version 5) XX DE Barley yellow mosaic virus RNA 1 for polyprotein, complete cds. XX KW capsid protein; polyprotein; RNA 1. XX OS Barley yellow mosaic virus OC Viruses; Riboviria; Potyviridae; Bymovirus. XX RN [1] RP 6263-7632 RX PUBMED; 2584951. RA Kashiwazaki S., Hayano Y., Minobe Y., Omura T., Hibino H., Tsuchizaki T.; RT "Nucleotide sequence of the capsid protein gene of barley yellow mosaic RT virus"; RL J. Gen. Virol. 70:3015-3023(1989). XX RN [2] RP 1-7632 RX PUBMED; 2273381. RA Kashiwazaki S., Minobe Y., Omura T., Hibino H.; RT "Nucleotide sequence of barley yellow mosaic virus RNA 1: a close RT evolutionary relationship with potyviruses"; RL J. Gen. Virol. 71:2781-2790(1990). XX DR MD5; 6ef78829f0fc5654287a29fd40164a17. XX CC Data kindly submitted in computer readable form by: CC Satoshi Kashiwazaki CC National Agriculture Research Center CC Tsukuba, Ibaraki 305 CC Japan XX FH Key Location/Qualifiers FH FT source 1..7632 FT /organism="Barley yellow mosaic virus" FT /segment="1" FT /strain="II-1" FT /mol_type="genomic RNA" FT /clone="pBYT10, pBYTS12, pBYTS352, BYTP1-5" FT /db_xref="taxon:12465" FT CDS 172..7404 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:Q01206" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001650" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR013648" FT /db_xref="InterPro:IPR014001" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/Swiss-Prot:Q01206" FT /protein_id="BAA00875.1" FT /translation="MEQTLAQAVSRKSKTDTPMAEERKHFSPMNFSANFVAPELFYSAN FT VRKIKNIFRERSTTRFLDAISSDFELVAFLTLSPAHLMQLETVLRHEMRSCVVPIVTSD FT ASFETVAVIKTALDGMRFHFGYTTLEKGWISMMRHAESCLQESSSSAVNDLQTQIKRVG FT SLLLSGKNRVEGCELSVLNLTARRFRIEYGLNGTYFGEHVAMLRGLKRYIYGTVPKEFL FT WAKTKKHSLFTIPAWIKRTPIDCFLFCLRVIPILHRCGVAVSLIYWSCAAALNFPAFMS FT FLFKRQFAKYLAHSFAKHSIYFMFLTIVAILWSFRTFTSQKPKIVLQARSTAEKEKKLM FT MILASVVGITYLFDYDIAEALGNCLHKISRLSSYLLDDHQGIASRMFGASYGLQAGDSA FT EDAVTTIISDLLSVTFKIVDEDASQGTVEDASETTFHSWVGVNTLAGRNMSRPLQYSVN FT ETYALTPQNVQLQARKMADANNCWSMVVGHTGSGKSTYLPVQYSNYLSTKSDRRQQILI FT CEPTQAATENVCAGVAANLGRAVYGRHEGWSRMGDHCIQVMTYGSALQCHAMDPSFIST FT FDAIFLDEAHDVKEHSLVFESICDTFKSVRKFYVSATPRDGSVCPEAARKYPLHVETSV FT CDSYRKFIAAQGGGDLLDISKHDTALVFLAGRPECIKAANAWNASVTGEKRAFSLSSDN FT FATDFSMLTERLKTHKTIIFTTNIIETGVTLSVDCVVDFGHTMRPCLDLNQKALRLDRR FT RVTRNERQQRIGRAGRLKDGYAIVCGDVDRAVNVISPDVLYGAALLSFKHNVPFYMNET FT FESSWLEGITKAQADTMTIFKLPIFLTRDLINADGSVAKEFLDVLKKHQFTTSDIKQAP FT SVTAKHIFPTWASYFSLHQALHYGDDKDEVPHELRYARVPFSVTTLSKFDWPALALACE FT KHRASMSNVFAGIEEPARVVTLQTNPANIQASITHLTHMSKNYKTLIENNQHVRQSMVT FT NVMYKWFSSTRITKDLDRNLRRCTDNLAVVEATLSSLRQILAGNTQVHATPHMQSTLED FT IIGLQASDTLTEESLASALGIFVPKSNLFLLLATKGFKLVYVVCILLLVNLVYLGLRKW FT REHLKQKGSNEILTNTMPVSEGGEILAEVMKMEPKMRKNIKKDMDAAVESKLCGFTFVF FT PDDDKIGLEGKGNKYRPREDARLMYSTREDATLDAWNEKAKERRKKVTDKSEPELRRAY FT EKRPYFNFYDLQTDSNILEAIFYTTEGDEFFRTADPNKDMNLVADKLRSFLDTKLVVGH FT HQRQMLEETAKVVIKDTKGTAHHMDISQHDPDHLKQNGSGKIGYPEHRGQFRQEGPAKT FT ADYDLGVEFGTDTDDITLEASTGILLSQVGVDVATRVGRIFIGTFNMNCYFYSDWILVP FT GHLQDRSGNVTIQFPDQTVQTTTDALNANGVKRFYGLDVIAIRRPAILRPRTKLVKAFA FT IEEPVIAQMVFVDAQGVRKFTQSVRARKEENSGRWSHKISTVLGMCGCQFWTLERQIDG FT IHVATNYTKKRNEFQPFTQEVVDFINGPGTKIPYCPWVFDRPACGYASHTALFEKPTTL FT TDIIHMQASDGLHNINNAIEGFGSSLRGQLVSPPTESTRQRFDKLFGSGSFELIGQMNK FT GLIDKHVIVGENDDVHDFMREHPTFTWLKDFMNEYAPSVLSYSAYYKDLCKYNRAKHVL FT TYNPEELHYATKGLIKMLEDAGLTQGSVRTPQQVISDIQWNTSAGPSYQGKKRDLCAHL FT SDDEVLHLAEVCRQQFLEGKSTGVWNGSLKAELRTIEKVEAEKTRVFTASPITSLFAMK FT FYVDDFNKKFYATNLKAPHTVGINKFGRGWEKLHDKLNRPGWLHGSGDGSRFDSSIDPL FT FFDVVKTIRKHFLPSEHHKAIDLIYDEILNTTICLANGMVIKKNVGTQRQPSTVVDNTL FT VLMTAFLYAYIHKTGDRELALLNERFIFVCNGDDNKFAISPQFDEEFGHDFSPELVELG FT LTYEFDDITSDICENPYMSLTMVKTPFGVGFSLPVERIIAIMQWSKKGGVLHSYLAGIS FT AIYESFNTPKLFKSIYAYLLWLTEEHEAEILAAMTQSSTALPIPSMLDVYRLHYGDDEI FT WLQAADPLTDAQKEDARIAAADGARFELADADRRRKVEADRVEAARVKKAADAALKPVN FT LTATRTPTEDDGKLKTPSGARIPSSAADGNWSVPATKQVNAGLTLKIPLNKLKSVPKSV FT MEHNNSVALESELKAWTDAVRTSLGITTDEAWIDALIPFIGWCCNNGTSDKHAENQVMQ FT IDSGKGAVTEMSLSPFIVHARMNGGLRRIMRNYSDETVLLITNNKLVAHWSMKHGASAN FT AKYAFDFFVPRSWMNPQDIEVSKQARLAALGTGTYNTMLTSDTTNLRKTTNHRVLDSDG FT HPELT" FT mat_peptide 6511..7401 FT /product="capsid protein" FT regulatory 7462..7466 FT /regulatory_class="polyA_signal_sequence" XX SQ Sequence 7632 BP; 2160 A; 1795 C; 1700 G; 1977 T; 0 other; aaaataaaac aaaacaaaac cgaacaaagc aaaacgaaac aaacacaaac atcacgcgct 60 tcccaagctc acaatacttg tagagtgatt tctgtcatcc tactcttcgt gagcttttcc 120 gcaaatcaac ccgtttgctt ttgcgccccc ttcaccttca ctctcgctcc tatggagcaa 180 accctagctc aagctgtgtc acggaaaagc aaaacagaca cacctatggc agaagagcgg 240 aaacatttca gccccatgaa tttttccgca aactttgttg ctcctgagct cttttatagt 300 gccaatgtga ggaaaatcaa aaatatcttc agagagcgca gcacaactcg gtttctggac 360 gcgatttcaa gtgactttga gcttgtcgct tttctcacct tgagtcctgc tcatttaatg 420 caacttgaaa cagttctgcg ccacgagatg cgttcgtgcg ttgtgccaat tgtcacctct 480 gatgccagct ttgaaacagt tgctgtcatc aaaaccgctc tggatggcat gagattccac 540 tttggataca ctactcttga aaaggggtgg atttccatga tgcgccatgc ggagagttgc 600 ctgcaagaga gctcttcttc ggctgtgaat gatctgcaga cgcaaattaa acgtgttgga 660 tcgctgctcc tgagtggaaa aaatcgcgta gaaggctgcg aactatctgt cttgaacctc 720 accgcgcgac gtttcaggat cgaatatggg ctaaacggta catactttgg cgaacatgtt 780 gctatgctac gcggcttaaa acgttatatc tatggtaccg taccaaaaga gtttttgtgg 840 gcgaaaacca aaaagcactc actgttcaca atccccgcgt ggatcaagcg tacgcccatc 900 gattgtttct tgttctgtct tcgcgttatc cctatcttac ataggtgtgg tgttgccgtg 960 tcacttattt actggtcgtg tgctgctgct ttaaattttc ctgcttttat gtctttctta 1020 tttaagcgtc agttcgctaa gtatttagct cactcctttg ctaaacactc catctacttt 1080 atgtttttaa ctatagttgc tattttatgg tcttttcgca cttttacttc tcaaaaacca 1140 aaaatagtgc ttcaagctag aagcacagca gaaaaagaga agaagcttat gatgattcta 1200 gctagcgtcg ttgggatcac ttacctcttc gactacgaca tagcagaagc tcttgggaat 1260 tgtctacata aaataagccg tctgtcctca tatctcctcg acgaccatca aggcattgca 1320 tcacgaatgt ttggagcaag ctacgggctt caagctggcg acagtgctga ggatgcagtc 1380 acaacgataa tcagcgactt actgtctgtt acttttaaaa ttgtggatga agacgcatca 1440 caaggcaccg tggaggacgc atcagagaca accttccaca gttgggttgg tgttaacaca 1500 cttgcaggtc gcaatatgtc aagaccactc cagtatagcg tcaatgaaac gtatgcactc 1560 acacctcaaa atgtccagct ccaagcgcga aaaatggcag acgctaacaa ctgctggtca 1620 atggttgttg gtcatacggg atctggaaag tccacatact tacctgtgca gtactccaac 1680 tacttatcca ctaagagtga taggcgacag caaatcctta tctgcgagcc aactcaggct 1740 gccactgaga atgtttgcgc tggcgtcgct gccaatctcg gcagagctgt ttatgggcgc 1800 catgagggtt ggtccagaat gggggatcat tgcattcaag ttatgacgta tggttctgcg 1860 ctccagtgtc atgccatgga ccctagcttc atatcaactt tcgacgcaat tttccttgat 1920 gaagcacacg acgttaaaga acactctcta gtctttgaga gcatttgtga cacattcaaa 1980 tccgttcgaa agttctatgt ttcagcaact cccagagatg gtagtgtttg tcctgaagca 2040 gccaggaaat atcctttaca tgttgaaact agcgtttgcg attcgtatcg aaagttcatt 2100 gcagctcaag gcgggggaga tttgttggac atctcaaaac atgacacagc tttagttttt 2160 ctagcgggac ggcccgagtg tattaaagct gctaatgcct ggaatgctag tgtcaccggt 2220 gagaagcgcg ccttttcctt gtcgagcgac aactttgcta ccgacttctc aatgctaact 2280 gagaggctca aaacacacaa aaccatcatc ttcaccacga acataattga gacaggtgtt 2340 actctcagcg ttgactgtgt tgtggatttc ggccatacaa tgcgcccatg tttagatctt 2400 aatcaaaaag cattgcgtct tgatcgacgc agagtgacgc gaaacgaaag acagcagaga 2460 attgggcgag cgggtcggct caaagacgga tacgccatag tgtgtggaga tgttgataga 2520 gctgtaaacg tcatctctcc tgatgttctt tatggtgccg ctctcctgag ttttaaacac 2580 aatgtgcctt tctacatgaa cgaaacattt gagagttcct ggttggaggg tattacaaag 2640 gcacaagcag atacaatgac aatcttcaag cttcctatat ttctaacacg agatctcatc 2700 aatgcagatg gctcagttgc taaggagttt ctcgatgtcc taaagaagca tcaattcaca 2760 acaagcgaca taaagcaagc accaagtgtc acagccaaac acatcttccc aacttgggct 2820 tcatacttct ctctccacca agcacttcat tatggtgatg ataaggatga ggtaccacac 2880 gaattgcgat atgcgcgcgt tcccttctcc gtcacaactt tgagcaaatt cgattggcca 2940 gccttagctc ttgcatgtga gaaacataga gcttccatgt caaatgtgtt tgctggcatc 3000 gaagaacctg cacgcgttgt cactctacaa acaaatcctg cgaacataca agcgagcatc 3060 acacatttaa cgcacatgag taagaactac aaaactctta ttgaaaataa tcagcacgtg 3120 cgccaatcca tggtgacgaa tgttatgtat aagtggttct cttctactcg catcacaaaa 3180 gatcttgata gaaacttgcg aagatgcacg gataaccttg cagttgtcga ggccacactc 3240 agctcactta gacaaatctt agctggcaac acgcaggttc atgcaacgcc acacatgcag 3300 agcactcttg aggatattat tgggcttcaa gctagcgaca cacttacgga agagagctta 3360 gcaagcgcac ttggcatctt tgttccgaag agcaacctct ttctgctgct agctaccaaa 3420 ggttttaaac ttgtgtacgt tgtctgcatc ttacttcttg tgaaccttgt ttatcttggt 3480 cttcgcaagt ggcgcgagca tcttaagcag aaaggaagca atgaaatcct aactaacaca 3540 atgccagtta gcgaaggggg ggaaattctc gctgaggtca tgaaaatgga gcctaaaatg 3600 agaaagaaca tcaagaagga tatggatgca gccgttgaga gcaaattatg tggtttcacc 3660 tttgtttttc cagatgatga taaaattggt cttgaaggta agggaaacaa gtaccgccct 3720 cgcgaagacg ctcgtctcat gtactccacg agggaagacg ccacccttga cgcttggaat 3780 gagaaagcaa aggaaaggcg taagaaggtg accgacaaat ctgagccaga gcttcggaga 3840 gcctatgaaa agagaccata cttcaatttc tacgaccttc aaacagatag caacattctg 3900 gaagctattt tctacaccac tgaaggcgat gagtttttcc gaacagcaga tcccaacaag 3960 gacatgaact tggttgctga caaactacgc tcttttctcg acacaaagct tgttgttgga 4020 caccaccagc ggcagatgct agaagaaaca gccaaggttg tcatcaaaga tacgaaggga 4080 actgcgcacc acatggacat ttcacagcat gatccagacc atctaaagca gaatgggtcc 4140 ggcaaaattg gatatccaga acaccggggg cagtttcgac aggaaggacc tgccaaaaca 4200 gcggattacg atcttggagt tgagtttggc accgacaccg atgacatcac gctcgaagcc 4260 tctactggga tattattgtc acaagttggg gtcgacgtcg caacccgagt tggaagaatt 4320 ttcattggta ctttcaacat gaactgttac ttctacagcg actggattct ggttccagga 4380 cacctgcaag acagatccgg taacgtgaca attcaatttc ctgaccaaac agtgcaaacc 4440 acaactgatg cactcaacgc aaatggtgtg aaacgattct atggattaga tgtgatagca 4500 attcggcgcc ctgctatctt gagacctcgc accaagttgg tcaaagcttt tgctattgag 4560 gaaccagtta tcgcacaaat ggtctttgtt gacgcacaag gagttcgtaa gtttactcaa 4620 tctgttaggg ccagaaagga ggagaattcc ggacgttggt cacataagat ttccactgtt 4680 cttggtatgt gtggatgcca gttctggacg ttggaaagac agattgatgg aatccatgtt 4740 gccacaaact acacaaagaa gcgcaacgag ttccaaccct tcactcagga ggtcgttgat 4800 ttcataaatg gacctggaac aaaaatcccc tactgcccat gggtattcga tagaccggct 4860 tgtgggtatg catcccacac agctttgttc gagaaaccaa ccacactaac tgacatcatt 4920 cacatgcaag cttctgatgg tttgcacaac atcaacaatg ccattgaggg tttcgggagt 4980 tcactgaggg gtcagctcgt gtcaccacct actgaatcca ccaggcaacg tttcgataag 5040 ctgtttggca gtggcagctt tgaactcatt gggcaaatga acaaaggctt aatcgacaaa 5100 cacgtaattg ttggggaaaa tgatgatgtt catgacttca tgcgcgagca cccaacattt 5160 acttggttga aagatttcat gaatgagtat gcgcctagtg ttttgtctta ctctgcttac 5220 tacaaagacc tttgcaagta taatcgtgca aaacatgtgc taacttacaa cccggaagag 5280 ctccattatg caacgaaagg actgatcaag atgttggaag acgctggctt gacacaaggc 5340 agtgtgagga caccccaaca agtcatttca gacattcaat ggaacacttc cgctggacct 5400 agctatcaag ggaagaaacg cgacctctgt gcccatttga gtgatgatga ggtgctgcat 5460 cttgctgagg tgtgtcgcca acaatttctc gaaggcaagt caactggagt gtggaatggt 5520 tctttgaaag ctgagttgag aaccattgag aaagttgagg cggagaaaac gcgtgttttc 5580 acagcctctc ccataacaag cttgtttgcc atgaaattct acgttgacga ttttaacaag 5640 aagttctacg ccaccaatct gaaagccccc catactgttg gcatcaataa gttcggtagg 5700 ggatgggaaa aattgcatga taagcttaat cgccctggat ggttgcatgg tagtggagat 5760 ggttctaggt tcgatagctc catcgatcct ctcttcttcg acgttgtgaa aactattcgc 5820 aagcactttc tcccttctga gcatcataag gccattgatc tcatatacga tgagattctc 5880 aacacaacca tctgcctggc taatgggatg gtcatcaaga agaatgttgg gacacagcgg 5940 cagcctagca ctgttgtcga taacacactt gtgctcatga ctgcatttct ctacgcatac 6000 atccacaaaa caggagaccg tgaattggcc ttgctaaacg agcgtttcat ctttgtttgc 6060 aatggcgatg acaacaagtt tgccatatct ccgcagtttg acgaagagtt tgggcatgat 6120 ttctccccag aacttgttga acttgggctc acgtacgaat ttgatgacat cactagcgac 6180 atttgcgaga atccttatat gtccctcacc atggtgaaaa ccccttttgg cgttggtttt 6240 tctcttcccg tggaaagaat catagctatc atgcaatggt ccaagaaagg gggagttctg 6300 cactcatatt tggctggcat ttccgcaatt tacgaatcct tcaacacacc aaaacttttc 6360 aaatcaatct atgcgtatct tctttggctc actgaggagc acgaggcaga aattctcgca 6420 gccatgactc aatcctcaac tgctcttccc ataccatcaa tgctcgatgt ttatcggttg 6480 cattatggtg atgatgaaat ttggctgcaa gctgctgatc ctctcactga tgcacaaaaa 6540 gaagatgcac gcattgctgc agctgatgga gcacgcttcg aactagccga tgctgatcgt 6600 agacgtaaag ttgaggctga ccgtgtggaa gcggcaagag tcaaaaaggc agctgatgct 6660 gcactaaaac cagttaacct cacagcaaca cgcacgccca cagaagatga tggcaaactt 6720 aaaacaccat ctggcgctag aataccatca tcagctgcag atggtaactg gagcgtgcca 6780 gcaacgaagc aagttaacgc tggtttgaca ctcaaaattc ccctgaataa gctcaaaagt 6840 gtacctaagt ctgttatgga gcataacaac tcagtcgcac tcgaatctga gctaaaagcc 6900 tggactgatg ctgtgcgcac aagtttgggt atcacaactg atgaggcatg gatcgatgcc 6960 ctcattccct tcatcggatg gtgctgcaac aatggcacct cagacaagca tgctgagaat 7020 caagtaatgc aaattgacag cggaaaggga gctgttacag agatgagtct gtccccattt 7080 attgttcatg ctcgaatgaa tggtggactc cgaaggatca tgcgcaacta cagtgatgaa 7140 accgtcttac tcatcacaaa caacaaacta gttgcacatt ggtcaatgaa gcatggcgct 7200 tctgcaaacg caaaatacgc tttcgatttc ttcgtcccac gatcatggat gaacccacag 7260 gatatcgaag tgtcaaagca agcgcgctta gcagcacttg gaactggaac gtataacacc 7320 atgttaactt ccgacactac caatctgcgt aagacaacca accacagggt tctggactca 7380 gatggacacc cagaactaac ctaaaccatc accccgtgcc ttatacatca cccaccccca 7440 ctcataattc agtctttaaa ttatgttcgt gacgtctttg tatcaggctc ggaacggttc 7500 tatgatccat atgcctttgg cagttacaat gtcagcattc tcattgagga gtatgacagc 7560 gtttgatcag ccgttttcaa tcatccgtcg ttggatggtg gtgcacttac gatacgagta 7620 ccagaaggta at 7632 //