ID AY965345; SV 1; linear; genomic RNA; STD; VRL; 2130 BP. XX AC AY965345; XX DT 22-DEC-2005 (Rel. 86, Created) DT 22-DEC-2005 (Rel. 86, Last updated, Version 1) XX DE Radish mosaic virus RNA-dependent RNA polymerase gene, partial cds. XX KW . XX OS Radish mosaic virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Comovirus. XX RN [1] RP 1-2130 RX PUBMED; 16402684. RA Petrzik K., Hola M., Spak J.; RT "Complete nucleotide sequence of Radish mosaic virus RNA polymerase gene RT and phylogenetic relationships in the genus Comovirus"; RL Acta Virol. 49(4):271-275(2005). XX RN [2] RP 1-2130 RA Petrzik K., Hola M.; RT ; RL Submitted (17-MAR-2005) to the INSDC. RL Virology, Institute of Plant Molecular Biology, Acad.Sci. Czech Republic, RL Branisovska 31, Ceske Budejovice 370 05, Czech Republic XX DR MD5; e3f38c0197d25d259348c1f0cbeadab1. XX FH Key Location/Qualifiers FH FT source 1..2130 FT /organism="Radish mosaic virus" FT /isolate="RaMV1" FT /mol_type="genomic RNA" FT /country="Czech Republic" FT /db_xref="taxon:328061" FT CDS <1..2130 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:Q2TCK2" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q2TCK2" FT /protein_id="AAY32935.1" FT /translation="AQHAQKFFDYLPFAEKEGEGIEKVAMLQKGIHIPLPTKTALVETP FT VEWHLDTPCDKYPSILSSDDPRLEVSGHTDYDPFKAGILKYKDPMGVVDNKLLIEVCEE FT IEQSWLDCKEEGETFEEVSLEQAINGVRDVDYMDRIPLATSEGFPHILSRSHGEKGKIR FT FVEGDSEAMMLIPGTSVAEALEIMEAQLENEVPTLIGIECPKDEKLPHRKIFEKPKTRC FT FSILPMEYNLLVRRRFLTFVRFIMRNRNVLPCQVGINPYGMEWTDLAMRLKRKGNNILC FT CDYSSFDGLLSKQVMKAMSDMINSFCGGSESSKRKREHLLMACCSRYAICKNSVWKVEC FT GIPSGFPLTVICNSIFNEILIRYSFKAILRSQKVPDMVSVSFDEYVSMVVYGDDNLLSV FT SEVIKPYFDGKRLKEFLATLRITITDGKDKTSPFLQFRCLEDCDFLKRGFKNRGLYWDA FT PEEKESLWAQLHYVNANNLEKHEAYKTNLVTVLRELFMWDKKECAELRRKALQRISWLV FT PSDLQTVAQIEAWYAGNRGKYLPDSSDSISMLLQKENLGPLLAPQGEQRGIEIMPRVRT FT ANLAHENFRDAKDDEVWVLCQTMYPHGRLPEGVIAVNWPVGTGRGGLPTSTWMDENFKR FT PTSELRKKLKSALDNGKKLVFATREGILPCNIMAVLFLVLEKKMKPEESNVILSAAILQ FT CKSLGYLPRECDFAF" XX SQ Sequence 2130 BP; 621 A; 359 C; 552 G; 598 T; 0 other; gcacaacacg ctcagaagtt ctttgattac cttccatttg ctgaaaagga gggagaagga 60 atagaaaaag ttgccatgtt gcaaaaaggc attcacattc ccttgccaac aaaaacagcc 120 ttggtagaaa cgcctgttga gtggcatttg gatacgccgt gtgacaagta ccccagtatt 180 ttgtcgagcg atgatcctcg attggaagtt tctgggcaca ctgattatga tccttttaaa 240 gcaggcattc tcaaatacaa ggatcctatg ggtgttgtgg ataacaagct gttgatagaa 300 gtgtgtgagg aaattgaaca gagctggctt gattgtaaag aggaaggcga gacatttgaa 360 gaggtcagtc tggaacaagc tatcaatgga gtcagagacg ttgactatat ggacagaatt 420 ccccttgcaa cgtcagaagg atttccacac attctgtcac gatcacatgg agagaaaggg 480 aagattcgtt tcgtggaagg tgattctgag gcaatgatgt tgattccagg aactagtgtg 540 gcggaagctt tagaaatcat ggaagctcag ttggaaaatg aagttccgac tctaattgga 600 attgagtgtc ctaaggatga gaagttacca catcggaaga tatttgagaa acccaaaaca 660 cgctgctttt ccattttgcc aatggaatat aacttgctgg tacgtagaag atttttgact 720 tttgttcgct tcattatgcg gaatagaaat gtgctaccat gccaggtagg gattaatcct 780 tatggaatgg agtggacaga tcttgcgatg cgcttaaagc gcaaaggcaa taacatttta 840 tgctgcgatt atagtagctt tgatgggtta ctttccaagc aagtgatgaa agctatgtct 900 gatatgataa acagcttttg tggtggtagt gaaagttcta aacgaaagcg tgaacacttg 960 ctgatggcct gttgctctcg gtatgctatt tgcaagaact ccgtgtggaa agtggaatgt 1020 ggtattcctt ctgggtttcc cctcactgtg atttgcaatt ccattttcaa tgagattttg 1080 atcagatata gtttcaaggc aatattgcgt tcccagaaag tccctgacat ggtttcggtg 1140 agttttgacg aatacgttag tatggttgtt tacggagacg ataatttgtt gtcagtcagt 1200 gaggttatta agccttactt cgatggcaaa cgtttgaagg agtttctggc taccctccgt 1260 atcactatta ctgatggaaa agataagaca agtccgtttc tccagttccg gtgtttagaa 1320 gattgtgatt ttctcaaaag aggtttcaaa aaccgagggt tgtactggga tgcaccagag 1380 gaaaaggaga gtttgtgggc acagcttcat tatgttaatg ccaacaattt ggaaaagcat 1440 gaagcctaca aaactaatct tgtgactgtt ctgcgtgagt tgtttatgtg ggataagaaa 1500 gagtgtgctg agcttcgaag aaaagcgtta caaaggatct catggttagt gccaagtgat 1560 ttgcagacgg ttgctcagat agaagcttgg tatgctggaa accgaggaaa gtatctccca 1620 gattcgagtg atagcataag tatgcttttg cagaaggaga atttgggacc tttgctggca 1680 ccccagggag aacaaagggg aatagagata atgcctaggg tgaggactgc caatctagca 1740 catgagaatt tcagagacgc aaaggatgac gaagtttggg tgttgtgtca aacgatgtat 1800 ccacatggcc gcttaccaga gggagtcatt gctgtcaatt ggcctgttgg aacaggaaga 1860 ggaggcttgc cgacatccac atggatggat gaaaacttta aacgtccaac gtcagagcta 1920 cggaagaagt tgaagagtgc tttggacaat ggcaaaaaat tggttttcgc aacacgtgag 1980 ggcatattgc catgcaacat catggcagtg ctgtttttgg tactcgaaaa gaagatgaag 2040 cctgaagaaa gtaatgttat tttatcagca gctattctac aatgtaaatc attgggttat 2100 ttgcccagag agtgtgattt tgctttttag 2130 //