ID AY863024; SV 1; linear; genomic RNA; STD; VRL; 6607 BP. XX AC AY863024; XX DT 23-DEC-2005 (Rel. 86, Created) DT 11-MAR-2007 (Rel. 91, Last updated, Version 3) XX DE Alternanthera mosaic virus, complete genome. XX KW . XX OS Alternanthera mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6607 RX DOI; 10.1007/s00705-005-0646-2. RX PUBMED; 16211329. RA Hammond J., Reinsel M.D., Maroon-Lango C.J.; RT "Identification and full sequence of an isolate of Alternanthera mosaic RT potexvirus infecting Phlox stolonifera"; RL Arch. Virol. 151(3):477-493(2006). XX RN [2] RP 1-6607 RA Hammond J., Reinsel M.D., Maroon-Lango C.J.; RT ; RL Submitted (21-DEC-2004) to the INSDC. RL Floral and Nursery Plants Research Unit, National Arboretum, USDA-ARS, RL 10300 Baltimore Avenue, Beltsville, MD 20705, USA XX DR MD5; dfcec3f00aa732f2aefe97c5d39b7743. DR EuropePMC; PMC3560364; 23386854. XX FH Key Location/Qualifiers FH FT source 1..6607 FT /organism="Alternanthera mosaic virus" FT /host="Phlox stolonifera cv. Sherwood Purple" FT /mol_type="genomic RNA" FT /country="USA:Pennsylvania" FT /db_xref="taxon:85454" FT 5'UTR 1..94 FT gene 95..4720 FT /gene="ORF1" FT CDS 95..4720 FT /codon_start=1 FT /gene="ORF1" FT /product="replicase" FT /db_xref="GOA:Q2TJB1" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR005123" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR037151" FT /db_xref="UniProtKB/TrEMBL:Q2TJB1" FT /protein_id="AAX62019.1" FT /translation="MAHFRSVLDQMNDPSLRAVIQEEAYREIKKTIAETKQYNPYAQDP FT AAADSLEKLGIESNPFSVRAHTHAAAKSIELDMYKITGYSLPKENPITFLFMKRSKLQY FT FHRGPQHGDLFLNAWIEPKDVTRYDLEDLFKPSITPEIQTRVAFIGDTLHFLPLGAIRE FT IFTNSQKLHTLYATMVLPPEAMHRMHSIHPSIYELEFHERNFIYKPGGHAGASYCHEYS FT QLQWLKVGKFEWCDKKYQKHYVTSQILETKGANHLFVFQRGNFATPTYRTFGVETKFVT FT LPPIFLPKKYNARYPIKKTVAQQLFLYIKSVKTVTERDIWAKVRQIIKTAELQSYSAKE FT LALIVNYYLLISKLDSVTCFDNVLTGGALKKLFKPIVAWWSTFKGKIFGKEEFEQLMEA FT LEWVDVSLSYRVETYSQANPNNQPKVMFGYEWLSTETGTPGTEEDVAPETPQEDEDPHE FT KYIQALQILTKALDQESAPPPTEPAQSSSINDPQQEEHLRSSHDLHTDESPSCSGSLSS FT YACHCPCGTELKIFSAEFPPIPPLSHGDRLKNREAFFFSRDGTPYSYTGGSHVSRGWPA FT FLDQILATAELVRPLPHFNQCLIQKYQRGASIPFHSDNEPCYDVDHQVLTINLTGEAEF FT KTSCKAGSGSCTLVENQFHLSPPGFQKTHKHSVVSLSAGRVSLTFRSTVKQGVTSEEGD FT YVEPDNLPWKAWLEKLRNLGFRGTQLQYDPNGALISPIESIKSLPKCSPEKVNPSLLKM FT LNSQARAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDWGHRFDSLVENGQRQLAIS FT VIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDWLKKLPTFPADQIKTFEKALL FT APTKPTVIFDDYGKLPAGYIEAFSFYMSSAELLVLTGDSKQSVHHESNENAMSSLIEPF FT TLEADKYSRYYINATHRNKRDLANKLGVYSEVTGITSITQGNHPVPGLHLLVPSLYKKQ FT AFSEMGHKASTYAGCQGLTAPRVQILLSEETSMCSREVIYTALSRAVHSIHFVNCGPNN FT QAFWAKLESTPYLKAFLSTLREDAAPVVKPKEEAPAPVDPPKTHIPVDSAMPIYEDLLD FT QMPEKHEREIFSEKHGHSNCVQTEDTFVQMFSHQQAKDETLLWATIEARLVISNPKANW FT QEFMEKKPIGDVLFGFYREAMGLPTEPIAFEPQLWESCIHEIQRTYLAKPINMLKNGQA FT RQSPDYDPNMISLFLKSQWVKKMEKLGALKIKPGQTIASFHQATVMLFGTMARYMRRMR FT EIFQPKNIAINCEMTPEDLTDWAVGPAGQWKFAGPSLANDFTAFDQSQDGAMLQFEVLK FT AKHHSIPEDVLDAYLHIKTNSKIFLGTLAIMRLTGEGPTFDANTECNIAFTHAKFQIPK FT GTAQLYAGDDSAIDGNPTVRESFRLVEQKLKLRSKPAIAMQEKGDWAEFCGYRITPKGF FT IKDPKKLHASLVLEKKKGNLRNVLRSYELDLALAYQHRDELHELLSEEELRLHYDTVRT FT LVKSGGGEVLKTFLPKDESLY" FT variation 178 FT /gene="ORF1" FT /replace="c" FT variation 819 FT /gene="ORF1" FT /replace="g" FT /note="results in histidine to arginine substitution" FT variation 1323 FT /gene="ORF1" FT /replace="a" FT /note="results in arginine to lysine substitution" FT variation 1807 FT /gene="ORF1" FT /replace="t" FT variation 2641 FT /gene="ORF1" FT /replace="c" FT variation 3152 FT /gene="ORF1" FT /replace="g" FT /note="results in threonine to alanine substitution" FT variation 3629 FT /gene="ORF1" FT /replace="t" FT /note="results in leucine to phenylalanine substitution" FT variation 4522 FT /gene="ORF1" FT /replace="a" FT variation 4645 FT /gene="ORF1" FT /replace="a" FT variation 4669 FT /gene="ORF1" FT /replace="g" FT variation 4678 FT /gene="ORF1" FT /replace="a" FT variation 4695 FT /gene="ORF1" FT /replace="c" FT /note="results in leucine to proline substitution" FT gene 4704..5402 FT /gene="TGB1" FT CDS 4704..5402 FT /codon_start=1 FT /gene="TGB1" FT /product="triple gene block 1 protein 26k" FT /db_xref="GOA:Q2TJB0" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:Q2TJB0" FT /protein_id="AAX62020.1" FT /translation="MNHFINLLIEEGYVRTNEILSDTLVVHAVAGAGKSTLIRKFIHQH FT PQARAYTHGVPDPPNLEGRFIQAFKNPDPNHFNILDEYCAEPLSGSWNVLIADPLQHRS FT QALRPHYIKRESHRLGAATCELLTRVGLPVLSNKTEDQVDSQGIFEGPLFGTVIALDST FT VRALLIKHGISPLCPAEVLGSEFEETTVVSEVPLSQVRFKHALYIALTRHRKSLHVRAP FT PLPDTPRRSL" FT variation 4819 FT /gene="TGB1" FT /replace="a" FT variation 5099 FT /gene="TGB1" FT /replace="c" FT gene 5356..5688 FT /gene="TGB2" FT CDS 5356..5688 FT /codon_start=1 FT /gene="TGB2" FT /product="triple gene block 2 protein 12k" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q52Z68" FT /protein_id="AAX62021.1" FT /translation="MSGLPHSLTPPADHSKPVLAAVVGVSLALVINSFLVYRLPSPGDN FT IHQLPFGGSYRDGTKSIHYNSPRAQSQISGASPFLIILILSALIYALSCRGGHHRARLH FT RCPCCS" FT gene 5624..5815 FT /gene="TGB3" FT CDS 5624..5815 FT /codon_start=1 FT /gene="TGB3" FT /product="triple gene block 3 protein 7k" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:Q52Z67" FT /protein_id="AAX62022.1" FT /translation="MPYLVEAAITVLACIGVLAALRPGSHPCTILLTGHSATISGDCGP FT VAPETIRALGDYLTGLRF" FT gene 5858..6481 FT /gene="CP" FT CDS 5858..6481 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:Q52Z69" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q52Z69" FT /protein_id="AAX62023.1" FT /translation="MSTPFPQITQEQMNAFTPHATSNLLPSSEQLTTIASLLVAAKVPA FT ASTTTIALELVNFCYDNGSSTYTVVVGPSSLAEVSLSQVANIVKASGTSLRKFCRFFAP FT IIWNLRTDKTPPANWEANGFKPTEKFAAFDFFDGVENPAAMQPPGGLVRTPSQAERIAN FT ATNKQVNLFQAAAQDNNFASNSAFITKGQLSSNSPTIQYLPPPE" FT variation 6112 FT /gene="CP" FT /replace="c" FT 3'UTR 6482..6607 XX SQ Sequence 6607 BP; 1778 A; 1894 C; 1483 G; 1452 T; 0 other; gaaaagtaaa gcaaagcaaa acaaagcaaa gaaactgaaa gtccatattt gcccttcgag 60 gagatcgatt acccatcccg gctagatcaa cagtatggcc cactttcgtt ccgttcttga 120 ccaaatgaat gatcccagcc ttcgggcggt cattcaagaa gaagcttacc gcgaaattaa 180 aaaaactatc gcggaaacta aacagtacaa tccttacgcc caggatccag cggcggctga 240 ctcattagag aaattaggaa tagaatctaa ccccttctca gtccgcgccc atacacacgc 300 ggccgcgaag tctatagaat tagacatgta caaaatcacg ggttactccc tcccaaagga 360 gaatccaatc acttttcttt tcatgaagag gtccaaactt caatacttcc acagaggccc 420 acagcatgga gacttgttcc tcaacgcttg gattgagcca aaggacgtta ccaggtacga 480 cttagaagac ctcttcaaac cttccatcac cccagaaatc caaactagag tggcattcat 540 tggagacaca ctacacttcc ttcccctagg ggctatcaga gagatattta caaactccca 600 aaaacttcac actctctatg caacaatggt actgcccccc gaagccatgc acagaatgca 660 ctcaattcac cccagcatct acgagctaga attccatgaa agaaatttca tatacaagcc 720 gggaggacat gccggggcgt cttattgcca cgaatactca caacttcagt ggctcaaggt 780 cgggaaattt gagtggtgcg acaaaaaata tcagaagcac tatgtgacat cacagattct 840 ggaaaccaag ggtgcaaatc accttttcgt gttccagcgc ggcaatttcg ccacccctac 900 ctaccgaact ttcggggtag agacaaaatt tgtcacactc ccacccatat tcctcccaaa 960 gaaatacaac gcgcggtatc cgataaagaa aactgtggca cagcagctat ttctctacat 1020 caagtctgtg aaaacagtca cggagagaga catctgggcc aaagtgagac agatcataaa 1080 gaccgctgag ctccaaagct actcggcaaa agaactcgca ctcattgtca actactactt 1140 gctcatttcc aagctggact ctgtcacatg tttcgacaat gtgcttacag ggggtgcgct 1200 caagaaactc ttcaaaccca ttgtggcttg gtggtccacc ttcaaaggca agattttcgg 1260 gaaggaggag ttcgaacaac ttatggaggc gctcgagtgg gttgacgtgt cactgtccta 1320 cagagtggag acatacagcc aagccaaccc aaacaatcaa cccaaggtga tgttcgggta 1380 tgagtggctc agcacagaaa cgggaacccc agggacagag gaggacgtcg ctcccgaaac 1440 cccacaagag gacgaggacc cacatgaaaa gtatatccag gccctccaaa tactgacgaa 1500 ggccctcgat caggagagcg ccccaccacc aacagaacca gcccaaagct ccagcatcaa 1560 tgatccacaa caggaggagc acctccgctc atcccacgac ctccacactg atgaatctcc 1620 aagctgctca ggaagcttga gttcttatgc ttgccactgc ccatgcggca ctgagctcaa 1680 aattttttca gccgagtttc cacccattcc cccactatca cacggcgatc ggctaaaaaa 1740 tagggaagca ttcttcttct caagagatgg cactccctac agctacactg ggggttccca 1800 cgtgtccaga ggatggccgg ctttccttga ccagatcctg gccactgctg agttggtgag 1860 gcctctcccc cacttcaacc aatgcctcat ccaaaaatac caaaggggcg cctccatccc 1920 cttccacagc gacaatgagc catgctacga tgtggaccac caagtgctca caatcaacct 1980 caccggcgaa gcggaattca aaactagctg caaagccggt tcagggagtt gcacgctggt 2040 agagaaccag ttccacctat cccccccagg cttccaaaag acgcataagc acagtgtagt 2100 ctcacttagt gcggggcgag tctcccttac attccgctcc actgtcaagc agggtgttac 2160 ctctgaagag ggcgattatg ttgagcccga caatctgcca tggaaggcct ggctcgagaa 2220 attgagaaac ctgggattca ggggcacaca gttgcaatat gatccaaatg gagccttgat 2280 ctcaccaatc gaaagcatca agtcacttcc gaagtgctcc ccggagaagg tcaacccctc 2340 cctcctcaag atgctgaata gtcaggctcg cgcaccaact ccattttcgc cgagccccat 2400 cagagcaaaa gcctattcct cagacgttaa gaactcccga attggcgcat tactccgaca 2460 gcagggcaag gattggggcc accgtttcga ttcactcgtg gagaatgggc aaagacagct 2520 agccatcagt gtgatccatg gggccggcgg ctctgggaaa tcaagggcgt tgcagatgta 2580 cctaaaagac aacccagatg ctgatgtcac gatagtgctg ccaactaacg agcttaggct 2640 agactggttg aagaaattac ccaccttccc agctgaccag atcaaaacct tcgaaaaggc 2700 cttgctggcc cccacgaagc ccacagtcat cttcgatgat tacggcaaac tgccggccgg 2760 gtatattgag gccttctcgt tctacatgtc ctcggctgaa cttctggtgc tcaccggtga 2820 ttccaagcaa agtgtgcacc acgagtctaa tgagaatgcg atgagcagcc tcattgaacc 2880 cttcaccctg gaagctgaca agtactcacg ctactacatc aatgccacac acagaaacaa 2940 gcgtgatctg gctaacaagc taggggtcta ctcggaggtc acgggaataa catccatcac 3000 ccaaggcaac caccctgtgc cgggacttca cctgcttgtc ccctcactct acaagaagca 3060 agctttcagc gagatgggcc acaaggcctc cacctatgcg ggctgtcagg gtctcacagc 3120 cccacgcgtg caaattctgc tctcagaaga gactagtatg tgttcccgcg aagttattta 3180 caccgccctc tcccgagccg ttcattccat tcactttgtc aactgcggcc caaacaatca 3240 ggctttttgg gccaagctgg agagcacacc ttatctgaaa gctttcctct ccacgctccg 3300 agaagacgcg gcacccgtcg tgaaaccgaa ggaggaagca ccagccccag ttgatccccc 3360 aaagacccac atcccagttg attcagccat gccaatctat gaggacctac tggatcagat 3420 gccggaaaag catgagaggg agatcttttc agaaaagcat gggcacagca attgcgtgca 3480 aacggaggat acctttgtgc aaatgttcag tcaccagcag gctaaggacg aaacccttct 3540 ctgggccacc atcgaggcga gactggtcat ttccaacccc aaggccaatt ggcaagaatt 3600 catggagaaa aaacccattg gagatgtgct cttcggtttc tacagagaag cgatggggtt 3660 gcccactgaa cctattgcct ttgaaccaca gctttgggag tcttgcatcc atgagatcca 3720 gcgtacctac ttggcaaagc ccatcaacat gctgaagaat ggacaggccc ggcaatcccc 3780 cgattatgat ccgaatatga tatctctctt tctgaagtcc cagtgggtga agaaaatgga 3840 gaagttgggt gccttaaaga ttaagcccgg acaaactatt gcctccttcc accaggccac 3900 tgtcatgctg tttggcacga tggccaggta catgaggaga atgcgggaga tcttccagcc 3960 taagaacatt gccatcaact gcgagatgac cccagaagat ctcacagact gggccgtggg 4020 tcctgccggc cagtggaaat tcgccggccc ctctctagcc aatgacttca cagcattcga 4080 tcagtcacaa gatggggcga tgcttcagtt tgaggtcctt aaagccaagc accacagcat 4140 tccagaggat gtcttggatg cctatctgca tatcaaaaca aactcgaaga tcttcttagg 4200 tacattggcc attatgagac tcacgggcga gggccccact ttcgatgcaa acactgagtg 4260 taacatcgct ttcacccatg caaaatttca gattccgaag ggtacagccc agctttacgc 4320 gggagatgac tcggcaattg atggcaaccc cacagtgaga gagagtttca gattggttga 4380 gcagaaattg aagctgaggt caaaaccggc gatcgcgatg caggaaaaag gagactgggc 4440 ggagttctgt ggatacagga ttacgcccaa aggtttcatc aaggatccaa agaaacttca 4500 cgcgagtctg gtgcttgaaa agaagaaagg caatttgagg aatgtgctga ggtcttatga 4560 gcttgacctg gccctggcat atcagcaccg ggatgaactt cacgaattac tctctgagga 4620 ggagctgcgt cttcactacg acacggttcg tacgctagtt aagtcaggtg gaggagaggt 4680 tttgaaaact tttcttccca aagatgaatc actttattaa cctcctcatc gaagagggtt 4740 acgtccggac gaacgaaatc ctctcagaca ctctagtcgt ccatgctgta gccggcgctg 4800 gcaagtccac cctcatccgc aaattcatcc accagcatcc acaggcccga gcgtacaccc 4860 acggagtccc tgacccccca aatcttgaag gccgattcat tcaggctttc aaaaacccag 4920 acccaaacca cttcaacatc cttgacgagt attgtgcaga gcctctgagc ggtagttgga 4980 acgtgctcat tgccgacccc ttacaacata gatctcaagc tcttcgaccc cactacatca 5040 aaagagagtc ccacagacta ggagcagcca cgtgtgaact cctcaccaga gtggggcttc 5100 cagttttgtc caacaaaact gaggatcaag ttgattccca gggcattttc gaagggcccc 5160 ttttcggcac cgtgattgct ctggactcca ctgtcagagc cctcctcata aagcacggga 5220 tttcaccact ctgcccggct gaggtcctcg ggtctgagtt tgaggaaacg acagtcgtct 5280 ctgaggttcc gcttagccag gtcaggttca agcacgctct gtacatcgct ctcacccgcc 5340 acagaaagtc tctccatgtc cgggctcccc cactccctga caccccccgc cgatcactct 5400 aagccagtgc ttgcagcagt agtaggagtt agtttagctt tagtaataaa ctctttcttg 5460 gtctatagac ttccctcgcc cggggacaat attcatcaac tgcccttcgg aggttcctac 5520 cgggacggaa ctaagagcat ccactacaat tcgcctaggg cccagagtca gatctcaggt 5580 gcatcaccgt tcctaatcat cctgatactc tcagccctca tctatgccct atcttgtaga 5640 ggcggccatc accgtgctcg cttgcatagg tgtccttgct gctcttaggc cagggtccca 5700 tccctgcaca attctgctaa ctgggcactc tgcgaccatt agcggagatt gtggacccgt 5760 cgcaccagag accatcaggg ctcttggaga ctatttaacc gggcttaggt tttagcatta 5820 gtttgattat tctattctta tcctagttaa aatcatcatg tctacaccat ttcctcaaat 5880 cactcaggaa cagatgaacg ctttcactcc acacgccaca tccaatctcc ttccatcatc 5940 ggagcagttg actaccattg ccagtctctt ggttgctgcc aaggtgcctg ccgcctcaac 6000 cacaaccatt gccctggaac ttgtcaattt ctgttatgac aatggctcca gtacctacac 6060 agtggtggtg ggtccttctt cacttgcaga ggtctcactc tcccaggttg ctaacatcgt 6120 caaagcctca ggcacctctc tccgcaaatt ctgcagattc tttgccccaa tcatctggaa 6180 cctcagaaca gacaagacgc ccccagccaa ctgggaagcc aatgggttca aaccgacaga 6240 gaagtttgca gccttcgatt tcttcgacgg agtggagaat ccggcggcca tgcagccacc 6300 aggagggttg gttaggactc ccagccaagc agaaaggatc gccaacgcca ctaacaagca 6360 ggtgaacctc tttcaggccg cggcacagga caacaacttc gccagcaact ctgcattcat 6420 caccaagggc caattgtcct ccaactcacc aactattcaa tacctcccac cacctgagtg 6480 atttctccac ccagtccaag cccgttgttt tcgcaatttt gttggggcta tcgagttttc 6540 aaaattgctt tcgcttctgt agacctaaat tacagcctag tgtgcggttt aatacctatt 6600 tacgcac 6607 //