ID AY860979; SV 1; linear; genomic RNA; STD; VRL; 3842 BP. XX AC AY860979; AY682103; XX DT 29-JAN-2005 (Rel. 82, Created) DT 30-SEP-2006 (Rel. 89, Last updated, Version 5) XX DE Strawberry latent ringspot virus NCGR MEN 454.001 segment RNA2, complete DE sequence. XX KW . XX OS Strawberry latent ringspot virus OC Viruses; Riboviria; Picornavirales; Secoviridae. XX RN [1] RP 1-3842 RX DOI; 10.1016/j.jviromet.2004.11.006. RX PUBMED; 15664053. RA Tzanetakis I.E., Keller K.E., Martin R.R.; RT "The use of reverse transcriptase for efficient first- and second-strand RT cDNA synthesis from single- and double-stranded RNA templates"; RL J. Virol. Methods 124(1-2):73-77(2005). XX RN [2] RP 1-3842 RX DOI; 10.1016/j.virusres.2006.06.001. RX PUBMED; 16837095. RA Tzanetakis I.E., Postman J.D., Gergerich R.C., Martin R.R.; RT "A virus between families: nucleotide sequence and evolution of Strawberry RT latent ringspot virus"; RL Virus Res. 121(2):199-204(2006). XX RN [3] RP 1-3842 RA Tzanetakis I.E.; RT ; RL Submitted (08-JUL-2004) to the INSDC. RL Botany and Plant Pathology, Oregon State University and USDA-ARS, 3420 RL Orchard Ave, Corvallis, OR 97330, USA XX RN [4] RC Sequence update by submitter RP 1-3842 RA Tzanetakis I.E.; RT ; RL Submitted (19-DEC-2004) to the INSDC. RL Botany and Plant Pathology, Oregon State University and USDA-ARS, 3420 RL Orchard Ave, Corvallis, OR 97330, USA XX DR MD5; f30a6d91825a29400f7738103b3ef0fd. XX CC On Jan 31, 2005 this sequence version replaced gi:56715022. XX FH Key Location/Qualifiers FH FT source 1..3842 FT /organism="Strawberry latent ringspot virus" FT /segment="RNA2" FT /isolate="NCGR MEN 454.001" FT /mol_type="genomic RNA" FT /db_xref="taxon:28351" FT 5'UTR 1..312 FT CDS 313..3282 FT /codon_start=1 FT /product="109 kDa polyprotein" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q5G2U3" FT /protein_id="AAW63129.1" FT /translation="MASFFSRRSTPEMPSVPSYSPREMEVLKSAITECGINYADVVRAA FT QTESGKLAILTAANTNSLKSLVATTTTQSAFRRLSESPKAIVHVAEGVGKQVLCDDKLT FT HQTTVVHTPKKVYDHMRSKRLKKTKDTDEEEPKYRSADICTIQLGVTSHLSGHSNQIAG FT IVLLDGNRATQEQAVLGIGVLPLYEAHSHALFAPRLNIHYDDPNFVDRLQLLTTFSDDV FT LGGGSPAMSYSTISVVRHNIADAHFLPEPLPYSKLKEKYPSGLKGLSNFQAAEIAPLQP FT ARLTRSASYMPIRRSGAKTVLTFEDNQASLREQQPLQARASFSFSGISYGQQDRAALPF FT APSPKCSFHNRVGCPCKQHTGEAEASGLHEELVPAASGGTEAIFFSPRSIPLPGSAKFV FT GSHPFSFPINSNVGTTVYTLPLIRTSLKDTEWGRYYKSYTFMRFKPTVRLVSSAPIQAK FT GLLWLCYDPCETLAKYPSRERALMLQGTWFMPGRHDSVTLTIDELATPSGYSIMTSDHN FT GAFKVVIIKDLENFEVADLGMELSLFLDVQDIGMGMGPEMPLTDSFLPLRQVVVDFDLS FT TTTPKGKALVVPLNPLLPGFDGAQWYPSCSSSILENHRYWKGTLVLEVIFNLPAMGGGT FT VEMGFANDSCSGRESDAYRYFGSTVVDLRAHRLLRARVPLHGYGGYLMGGSGSLFAVPP FT LTDYGQSLRFVLLFTAPLHISDTTKKGSVMVRYLGLEDCEYIQPTTSLGRLNPATTLVA FT SGAPVVQVGTSDWVEPPLFRLPLGLLQRRFRLLTISKWPKSGFLFFPTTPSSHIPKLVG FT TFEGEVEQHSPLMHRSQENAQWSGSLTYYLSIRYSGATPQGVLPLRPVCLGATILDNIM FT GKPCFIEKDTFVQVMPMADPRETIYLPTTDSVASYVTPPRRWVNTHFGATEMYGVRTCP FT AWVLLQFPNEEASHLGVRDISLWVEPKVTFRHAVGGFPILKPTPAPAIDYYYENTFPVG FT " FT mat_peptide 313..1410 FT /product="putative 40 kDa movement protein" FT mat_peptide 1411..2574 FT /product="large coat protein" FT mat_peptide 2575..3279 FT /product="small coat protein" FT 3'UTR 3283..3842 XX SQ Sequence 3842 BP; 855 A; 949 C; 868 G; 1170 T; 0 other; ttgaaaagca acctcgcact ttgttactaa atatttcttt caaagctatt ctgtattgtg 60 atacagaccc cttttgtccc ttgctagtta ctggacttat ccagtttgtt cccgtttttt 120 gtgtttccgt gctcgcctta attttccttt gatcacgcaa ccgcaaccac gttcactcta 180 agcaacgacg cttccccgat ttgccaagtt aggggttttt gcttttcttt ccacttcaca 240 cagcaatcct ttgctctgtt tctcttcttc cttcttctga tctatttact actcccaccg 300 cttttatctg atatggcctc gttcttttca cgccgttcca ctcctgagat gccctcagtt 360 ccttcgtact caccacgtga gatggaggta ctgaaatctg caatcactga gtgcggcatc 420 aactatgctg acgtagttag ggctgcgcaa actgagagtg gcaagcttgc tattctcact 480 gctgcaaaca ccaactctct caagagcttg gtggctacta ctacaactca gagtgctttt 540 cgccgactct ctgaatcccc aaaggctatt gttcacgttg cagagggtgt tggcaagcaa 600 gtcctctgtg atgataagct tacacatcag accactgtgg ttcatactcc caagaaggtt 660 tatgaccata tgagatccaa gaggcttaaa aaaaccaagg acactgatga agaggagcca 720 aagtatcgct ctgctgatat ctgtactatc caacttggag ttacttccca cctttcaggg 780 cactccaatc aaatagcagg cattgttctt cttgatggga atcgggccac ccaggagcag 840 gcggtccttg gaattggagt tcttcctctc tatgaggctc attcgcatgc tctctttgca 900 ccacgcctga atattcacta cgatgatcca aattttgtgg atcgtctaca gttgcttacc 960 accttctctg acgatgtgct cggtggtgga tcccccgcta tgtcctatag tactatctca 1020 gttgttaggc acaacatagc ggatgcacac tttctccctg aaccgctccc ttactctaag 1080 ttgaaggaga aatatccctc ggggttaaaa gggttgagca atttccaagc tgcagagatt 1140 gcccctctcc aacctgctag actgacaagg agtgcttcat acatgcccat tcggagatct 1200 ggagcaaaaa cagtgctaac ttttgaagac aaccaggctt ccttgcggga acaacaacct 1260 ttgcaagcac gtgcctcttt ttcattctct ggaatctctt atggacaaca ggaccgcgct 1320 gcactcccct ttgcgccatc tccaaagtgc tcctttcaca atcgtgttgg gtgcccatgc 1380 aaacagcata ctggtgaggc ggaagctagt ggactccatg aggagttggt tcctgcagcc 1440 tctggtggaa cagaggcaat cttcttttcc ccaaggagca ttcctctacc agggagtgct 1500 aaatttgtag gttcacaccc cttttccttt ccgatcaaca gtaatgtggg cactaccgtc 1560 tacacactcc cactgattag aacctctctt aaggatacag agtgggggag gtactataaa 1620 agttacacct tcatgcgctt caagccaacg gttaggttag tttcttcagc tcccattcaa 1680 gctaagggac ttttatggct ttgctatgat ccctgtgaga ctctagctaa atatcccagc 1740 agagagaggg cgctcatgct tcaaggaact tggtttatgc ctggtagaca cgattcagtg 1800 acactcacta ttgatgagtt ggcaacaccg tctggctact ccataatgac cagtgatcac 1860 aatggcgcct ttaaagttgt cattataaaa gaccttgaga actttgaggt tgctgatctt 1920 gggatggagc tctccctttt cctggacgtt caggatattg gtatgggaat gggtcctgaa 1980 atgcccctca cagatagttt cctaccactc cgccaggtag ttgtggattt tgatttatcc 2040 acgacaaccc caaaagggaa agctcttgtc gtgcccctca atcccctcct tccaggcttt 2100 gatggagctc aatggtatcc aagttgttcc tcctccatac tagagaatca ccgttactgg 2160 aaaggtaccc ttgttttaga ggtgattttt aacctcccag ctatgggcgg aggcactgtg 2220 gaaatgggct ttgctaacga ctcctgctct ggccgggaga gtgatgccta tcggtacttt 2280 ggttccacag tggtggatct gcgggctcat cggttgctac gtgctagggt tccgctccat 2340 ggttatggtg gttatctaat gggtggtagt ggttctctgt ttgctgttcc tccacttact 2400 gattatgggc aatctctgag atttgtcctt ctttttacag ctcctctaca tattagtgac 2460 accacaaaga aggggtcggt aatggtccgt tatcttgggt tggaggattg tgagtatata 2520 caaccaacca cctctttggg gagattgaat ccggcaacta ctctggtggc ctcaggagct 2580 cctgttgttc aagttggaac ttctgattgg gtggagccac ctcttttccg cttacctctg 2640 ggcttgttac agaggcggtt tcgtctcctc acaatctcaa agtggcctaa gagtggcttc 2700 cttttctttc ccaccacacc cagctcgcat attccaaagt tggttggcac ttttgaaggg 2760 gaagtggagc aacacagtcc gctaatgcat aggagccaag agaatgccca gtggagtggc 2820 tcactgactt actacctctc cattcgttac tctggtgcga caccccaggg agttttgccc 2880 ctgaggcctg tgtgcttggg agccaccatt ttggataata taatgggaaa gccatgtttc 2940 attgaaaagg acacttttgt ccaagttatg ccgatggctg atcctcgtga gactatttac 3000 ctacccacta ctgatagtgt ggcttcgtat gtaacaccac ctagacgttg ggttaacacc 3060 cactttgggg caacagagat gtatggtgtt cggacttgtc cagcttgggt gctacttcag 3120 tttccaaacg aagaggcttc ccaccttgga gttcgcgaca tttccttgtg ggtggagccc 3180 aaggttacat ttcggcatgc cgttggtggg ttcccaatct tgaagccaac tccagctcct 3240 gcaattgatt attattatga gaacaccttc ccagtgggat aggtcgctgg tctctgttac 3300 tcttttctta ggcatttctc aaggagaata tccctggccc agatgggttt ttactaggca 3360 agccggtgaa cttcgtgtgt cactaccatg gaactacatg gtttagggac ttttattagt 3420 cccttggtta cttttacctc tacattgtcc atgtgctgag gctaacttta attagttgga 3480 tctttggacc cctcctcggg ttattaggta agctgtaagt aagcagccgc tagtgttctg 3540 gatttccagg catagtgaga atcagtggca gattggtgaa gccacacgct tgtagaccgt 3600 acaatagtct actcttatgc gcttttgtag ttttagggtc ttgtgatatt atctctttat 3660 tgagttgtat gtcacttgtt atgccaaccc gctttagtgt gttttcttga gcctctcatg 3720 tcttccttca ttggatgtac gtgactgtta agctctttgc tttcttttgt gtttaataaa 3780 ggattaacca ggcatcctcc caggttttac cgggtttagt tctggcactt agaataagct 3840 tt 3842 //