ID AY855920; SV 1; linear; genomic RNA; STD; VRL; 5652 BP. XX AC AY855920; XX DT 15-JAN-2005 (Rel. 82, Created) DT 29-JUN-2007 (Rel. 92, Last updated, Version 4) XX DE Barley yellow dwarf virus - PAV strain PAV-CN, complete genome. XX KW . XX OS Barley yellow dwarf virus PAV OC Viruses; Riboviria; Luteoviridae; Luteovirus. XX RN [1] RP 1-5652 RX DOI; 10.1007/s00705-007-0947-8. RX PUBMED; 17347769. RA Liu F., Wang X., Liu Y., Xie J., Gray S.M., Zhou G., Gao B.; RT "A Chinese isolate of barley yellow dwarf virus-PAV represents a third RT distinct species within the PAV serotype"; RL Arch. Virol. 152(7):1365-1373(2007). XX RN [2] RP 1-5652 RA Liu F., Wang X., Zhou G.; RT ; RL Submitted (14-DEC-2004) to the INSDC. RL Plant Pathology, Institute of Plant Protection,Chinese Acadamy of RL Agricultural Sciences, West Yuanmingyuan Road No. 2, Beijing 100094, China XX DR MD5; e9e4c0ac5265fccd10a0a2ad1ca4ab68. DR EuropePMC; PMC4422679; 25946037. DR EuropePMC; PMC4558997; 26337051. DR RFAM; RF00434; BTE. DR RFAM; RF01508; BYDV_5_UTR. XX FH Key Location/Qualifiers FH FT source 1..5652 FT /organism="Barley yellow dwarf virus PAV" FT /strain="PAV-CN" FT /isolate="China" FT /mol_type="genomic RNA" FT /db_xref="taxon:2169986" FT CDS join(140..1156,1156..2742) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase P1-P2 fusion FT protein" FT /note="low-abundance product derived from C1 ribosomal FT frameshift" FT /db_xref="GOA:Q5I4G8" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:Q5I4G8" FT /protein_id="AAW50579.1" FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKSGVTEAWTDF FT FLKSRGGVYAPLNCEPKSTELEVKADKLEKLLEDMHLFEVRAAKTYIKEKGRGFINCWN FT DLRTRLQLVKSVKDEARDNIKAASKIGVEFTAPTNIADLYEFTEVSKVETGLTKETTRV FT VNGEEETSTVPLVEDVRRIKNDEASRECASNWIREVIKLKNSTLSADELSLATIARYVE FT NLGEKYKLDIASKTYLKQCAMISVPIPSQKDIKTKMVIQSPAARSLRERMAVLDSQGFL FT EGLCTASGFESPFTILGLPEIAVTDGARLRKVSSNINYLTQTHLGLVYKAPNASLHNAL FT VAIERRVFTVGKGDSAIYPPHPEYDIFSETMGYFSESIVHKVGYCKTYTPQQLALSYSA FT GKRAQYFKAIESLKKEPYQIKDSNVQAFLKKEKHWMTKAIAPRLICPRSKRYNIILGTR FT LKFNEKKIMHAIDSMFGSPTVLSGYDSFTQGEIIARKWQKFASPVAIGVDASRFDQHVS FT EQALKWEHGIYNGIFGDTELALALEHQLVNNIKMFVEDKMLTFKVRGHRMSGDINTSMG FT NKLIMCGMMHAYFKKLGVEAELCNNGDDCVIITERVNQHLFSGMHDHFLKYGFNMVTET FT PVYELGELEFCQSKPVRIGGSYRMVRRPDCIGKDSNTLLSMRNESDVKSYMSAVAQCGL FT VLNAGVPILESFYRCLHRSSGYKKVSEEYIKNVISYGTDERLQGRRTFKETPITTDNRM FT SYWESFGVDPKIQQLVERYYDNLKVSAQLQSVKVTTPHLQSILLSIPENNSHNEY" FT CDS 140..1159 FT /codon_start=1 FT /product="P1" FT /note="ORF1; RNA-dependent RNA polymerase P1" FT /db_xref="GOA:Q5I4G7" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:Q5I4G7" FT /protein_id="AAW50578.1" FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKSGVTEAWTDF FT FLKSRGGVYAPLNCEPKSTELEVKADKLEKLLEDMHLFEVRAAKTYIKEKGRGFINCWN FT DLRTRLQLVKSVKDEARDNIKAASKIGVEFTAPTNIADLYEFTEVSKVETGLTKETTRV FT VNGEEETSTVPLVEDVRRIKNDEASRECASNWIREVIKLKNSTLSADELSLATIARYVE FT NLGEKYKLDIASKTYLKQCAMISVPIPSQKDIKTKMVIQSPAARSLRERMAVLDSQGF" FT CDS 2856..4790 FT /codon_start=1 FT /transl_except=(pos:3453..3455,aa:OTHER) FT /product="aphid transmission protein P5" FT /note="translated from subgenomic RNA1 as a fusion protein FT via read-through of the coat protein (P3) stop codon" FT /db_xref="GOA:Q5I4G6" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:Q5I4G6" FT /protein_id="AAW50582.1" FT /translation="MNSVGRRGPRRANNGTRRRRRRAVRPVVVVQPNRTGPRRRNARRA FT RGRRPNSVFGPKRGAEVFVFSVDNLKANSSGILKFGPDLSQCPAVSDGVLKSYHNYKIS FT SINVEFRTHASATTSGAMFIELDTSCKQSALSSYINSFTISKSASKSFRAAEIGGTQFQ FT ATSVNQFFLLYKANGTTTDIAGQFIIKIELHLMTAKXVDSSTPEPKPTPAPTPPPQPEP FT KPEPTPAPPPKRFFEYVGTPIGVISTRENTDSISVSKLGGQSMQYIENEKCETKTIDSF FT WSTNNNVSAQAAFVFPVPEGSYSVNISCEGLQSVDHIGGNEDGYWIGLIAYSNSSGDNW FT GVGNYKGCVFTNFLATNTWRPGHKDLKLNDCQFTDGQIVERDAVMSFHVQASGKDACFY FT IMAPKTMKTDKYNYVVSYGGYTNKRMEFGTISVTCDESDVEALRMSRHSESPTRVNNVL FT IDEGYHQTLPPIQDFGLCDVQTPGQDEVEEDDKQTVSTEPDIALQEYEAATAEIPDAEE FT DVLPSREQLSSKPVDTSGEEIPKPPPRDNEILGVYQGQPIYADDVPPIARQKLRDASKA FT PSTMLYDKAPKPKSFLSRLVEGNRSKVDTSAPSTATTSNLTREQLREYTRIRNSLGLTA FT AKEYKAQFS" FT CDS 2856..3455 FT /codon_start=1 FT /product="coat protein P3" FT /note="ORF3; translated from subgenomic RNA1; occasional FT read-through of stop codon produces P3-P5 fusion protein" FT /db_xref="GOA:Q5I4G5" FT /db_xref="InterPro:IPR001517" FT /db_xref="UniProtKB/TrEMBL:Q5I4G5" FT /protein_id="AAW50580.1" FT /translation="MNSVGRRGPRRANNGTRRRRRRAVRPVVVVQPNRTGPRRRNARRA FT RGRRPNSVFGPKRGAEVFVFSVDNLKANSSGILKFGPDLSQCPAVSDGVLKSYHNYKIS FT SINVEFRTHASATTSGAMFIELDTSCKQSALSSYINSFTISKSASKSFRAAEIGGTQFQ FT ATSVNQFFLLYKANGTTTDIAGQFIIKIELHLMTAK" FT CDS 2896..3357 FT /codon_start=1 FT /product="movement protein P4" FT /note="ORF4; translated via leaky scanning on subgenomic FT RNA1" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q5I4G4" FT /protein_id="AAW50581.1" FT /translation="MAQEGGAVEQFGQWLWSNPIEQDPDDEMLDAQEEEGQILYLDQNA FT GLRYSYSQSTTLRPTPPGSSNSVPIYRNAQRFQTEYLSPTTITRSQVSTLSLEHTRPPL FT RRALCLLSSTPRASNQPYLATLTHSPSANQPQSPSAQRRLEGPSSRRHR" FT CDS 4920..5042 FT /codon_start=1 FT /product="P6 protein" FT /note="ORF6; highly variable sequence among BYDV isolates" FT /db_xref="InterPro:IPR009426" FT /db_xref="UniProtKB/TrEMBL:Q5I4G3" FT /protein_id="AAW50583.1" FT /translation="MNDLHVIALCVLSSTILAGTALAIGCCVGCCRLIDAAYSV" XX SQ Sequence 5652 BP; 1616 A; 1362 C; 1355 G; 1318 T; 1 other; tgaagattga ccatctcaca aaagctgtta cgtgcttgta acacactaca cactcgtttt 60 gtaatcgaga agtagttgca agaacggtcc tctcattgcc tgactagctg agagccatcc 120 ttctatcccc accgccacca tgttctttga aatacttata ggagctagtg ccaaggcggt 180 caaagatttc atcagtcact gctactctag actgaaatct atatattatt ctttcaaacg 240 atggctgatg gaaatatctg ggcaatttaa ggcccatgac gcctttgtca acatgtgctt 300 tgggcacatg gctgacattg aagacttcga ggctgaactc gctgaagagt tcgccgagag 360 ggaggatgag gtggaagagg ccaggagcct cttgaaactg ctggtcgccc aaaaatccaa 420 atccggggtg accgaggctt ggaccgactt ctttttgaag tcgagaggcg gcgtttacgc 480 gccacttaat tgcgagccta aatccactga acttgaggta aaagcggata agctcgaaaa 540 actcctcgag gacatgcacc tatttgaggt gcgcgcggct aagacttaca tcaaagagaa 600 aggccgcgga ttcatcaact gttggaacga cctgcgaaca cggttacagt tggtgaagtc 660 ggttaaggac gaggccagag ataatatcaa ggcggcctcc aagattggtg tcgagttcac 720 agctccgacc aatattgctg atctctacga gttcactgaa gtatcaaaag tagagacagg 780 tctaaccaag gaaaccacca gggttgtcaa cggtgaggaa gagacatcca cagtacccct 840 ggttgaagat gtccggagga taaagaatga cgaggccagc agggagtgtg cctccaattg 900 gatcagggag gtaattaaac tgaaaaattc caccctttct gctgacgagc tttccctggc 960 aaccatcgcc aggtacgtgg aaaatctagg ggagaaatat aaacttgaca ttgcttccaa 1020 aacttatctt aagcaatgcg caatgatctc tgtaccaatc ccctcccaaa aagacataaa 1080 aacaaagatg gtgatacaga gccctgctgc ccgctcactg cgtgagcgca tggcagtcct 1140 tgattcccag ggtttttaga ggggctctgt accgcctccg gttttgaaag cccatttacc 1200 attcttggct taccggagat tgcggtcaca gacggagccc ggttacgtaa ggttagtagc 1260 aatatcaatt accttaccca aacccaccta ggcctagtgt ataaagctcc taatgcatcc 1320 ctgcacaacg cgctcgtagc tatcgaaagg agggtgttta cagtaggaaa gggggattct 1380 gccatttacc ccccccaccc ggaatatgac attttctccg aaacaatggg ctacttctct 1440 gagtccattg ttcacaaggt gggatactgc aagacataca ctccacagca attggctctt 1500 agttacagtg cagggaaaag ggcccagtat ttcaaagcca ttgagtcctt gaagaaggaa 1560 ccctatcaaa ttaaggactc aaatgttcag gcattcctca agaaggagaa acactggatg 1620 accaaagcca tcgccccgcg cctgatttgc ccccgctcca agcggtacaa tatcatcctt 1680 ggaactcgtt tgaagtttaa cgagaagaag atcatgcatg ccattgatag catgtttgga 1740 tcccccactg tactttcagg ctatgatagt ttcacccaag gtgaaatcat agccagaaag 1800 tggcaaaagt ttgcatcccc cgttgctatc ggtgttgatg ctagccgctt tgaccaacac 1860 gtgtctgagc aggcgcttaa gtgggaacac gggatataca atggcatttt tggcgacact 1920 gaattggccc tcgctctcga acatcaactt gtgaataaca tcaaaatgtt cgttgaggat 1980 aagatgctaa cttttaaggt tagagggcac aggatgtcag gggacataaa taccagcatg 2040 gggaacaagc tcatcatgtg tggcatgatg cacgcttatt ttaagaaact gggtgttgaa 2100 gcagaactgt gtaacaatgg agatgattgt gtcatcataa ctgagagggt aaaccaacac 2160 cttttcagtg gaatgcatga ccatttcctc aaatacggct tcaacatggt gacggagacc 2220 ccggtttacg aactcgggga gcttgaattt tgtcaatcca aacccgtcag aatcggtggc 2280 agttatcgga tggtccgcag gcccgattgc atagggaaag atagcaacac acttttgagc 2340 atgcgtaatg aatccgacgt taaaagttac atgtcggctg tggctcagtg tggtctcgtt 2400 ttgaatgcgg gtgtacccat actcgaaagc ttctaccgtt gtctgcatag aagttcgggg 2460 tataagaaag taagcgagga atacatcaaa aacgttatat catatggaac agatgagcgc 2520 cttcaaggta gacgtacctt caaggagaca cctatcacca cagacaatcg catgtcgtat 2580 tgggaatcat ttggagttga ccctaagatt caacaacttg tcgagaggta ctacgacaat 2640 cttaaggtaa gtgcccaact ccagagtgtg aaggtgacaa ctccacatct gcaatcaatc 2700 ctcctctcca ttccggagaa caactcgcac aacgaatatt aattaccaaa tcttagccgg 2760 gtttgggata gggtttatag taggtatacc ctgtacatta gctctcacgt actttattta 2820 caataaagtt tcagacacca ctagagaggt ggtgaatgaa ttcagtaggc cgtaggggac 2880 ctagaagagc aaacaatggc acaagaaggc ggcgccgtag agcagttcgg ccagtggttg 2940 tggtccaacc caatcgaaca ggacccagac gacgaaatgc tagacgcgca agaggaagaa 3000 ggccaaattc tgtatttgga ccaaaacgcg gggctgaggt attcgtattc tcagtcgaca 3060 accttaaggc caactcctcc gggatcctca aattcggtcc cgatctatcg caatgcccag 3120 cggtttcaga cggagtactt aagtcctacc acaattacaa gatctcaagt atcaacgttg 3180 agtttagaac acacgcgtcc gccactacgt cgggcgctat gtttattgag ctcgacacct 3240 cgtgcaagca atcagcctta tctagctaca ttaactcatt caccatcagc aaatcagcct 3300 caaagtcctt ccgcgcagcg gagattggag ggacccagtt ccaggcgaca tcggtgaatc 3360 agttctttct cttgtacaag gcaaatggca cgacgactga tattgcgggg cagttcatca 3420 taaaaattga gcttcacttg atgacggcca aataggtaga ctcctcaaca ccggaaccta 3480 aacccacacc agctccaaca cccccccctc aacctgagcc caaaccagag cccacacctg 3540 cacctccccc aaaacgcttc tttgagtatg ttggcacccc gatcggagta atatcaactc 3600 gggaaaacac tgatagcata tcagtgtcga agcttggggg tcagtcaatg cagtacatag 3660 agaacgagaa gtgtgagaca aaaaccatcg attctttctg gagcacaaat aacaacgttt 3720 cggcgcaagc cgccttcgtt tttccagtgc cagaaggatc gtacagtgtg aatatctcgt 3780 gtgaaggtct tcaatccgtt gaccacattg gtggcaacga agatggctat tggattgggc 3840 tgatagccta ctccaattca tcaggtgaca attggggcgt gggcaactac aaagggtgtg 3900 tgtttacaaa tttcttggca acgaatacct ggcgaccagg tcacaaggat ttaaaactta 3960 acgattgcca attcacagac ggacaaatag ttgaaaggga tgcagtcatg tctttccacg 4020 tgcaggcatc aggcaaggac gcctgtttct acataatggc tcccaaaaca atgaaaactg 4080 acaaatacaa ctatgttgtc tcgtatggag ggtacacgaa caaaaggatg gagttcggta 4140 ctatttccgt tacgtgtgat gaatccgatg ttgaggcact ccgtatgtct aggcactccg 4200 agagtcctac ccgcgtaaat aacgttttaa tagatgaagg ataccatcaa actttacctc 4260 ccatacaaga tttcggactg tgtgatgtgc aaactcccgg tcaagatgag gtagaggagg 4320 atgataaaca aactgtttcc actgaacctg atatagcgtt gcaggaatac gaggccgcaa 4380 cagctgagat tccagacgct gaagaggatg ttttgccctc tagggaacag ctttcatcta 4440 aacctgtgga cacatccggc gaggaaattc caaaacctcc cccgagggac aatgaaatcc 4500 ttggagtcta ccaaggtcaa cctatatacg ctgatgatgt gccacccatt gctaggcaga 4560 aacttcgaga tgcctccaaa gcaccctcca ccatgctata cgacaaggca ccaaagccca 4620 agtcgttttt atcccgttta gtggaaggga acaggtccaa ggtagatacc tctgctccat 4680 caaccgcaac gacatctaat ttgaccaggg agcagcttcg tgaatatact agaattagaa 4740 atagcttagg ccttaccgcc gcaaaggagt acaaggcaca attctcgtga agacaaacac 4800 cactcgcgca aatcggatcc tgggaaacag gcngaactta ggttcgtaag ctcgggtgat 4860 tggagggtgg gctgtcaacc caccaccaac tcaccgccgt atcgtattgc gtgtggccga 4920 tgaatgatct tcacgttatt gccctctgtg tcctctcctc aaccatcctg gcaggtacag 4980 cgctagcgat tggttgttgc gtcggttgtt gcaggttaat agacgcggct tattctgtgt 5040 aagttgcgac caaaaatatc gaggaagctt cggcttagtg agaggattaa cgaccctcag 5100 caacggctgg tcttggcaag cctgaataac ttgctataag acaactggaa acccaccagt 5160 gattaaataa ggtagcttgc ttctgagcta tacactgccc ccgcgcaatc ggggtaaaca 5220 actataactg cccaactcga tgaaacgaga gtggaggtgg cggagtgggt gacttcgtga 5280 tgtgcacccg aacgtcaggt ttgaagacgt tataaaacac agcgagatgg gaacctcgtt 5340 aaaagtccct cggctgatac acccagtcga ccggacctgt tggcataccc ttgatacgaa 5400 acaagggctt ctgagagcca ctacctgtga tgcaaggtag ggtaagagtc ttagcaacct 5460 ctgcactcgg aagtggacat aaaccatagc aatccaacag catcccggaa gagagttttc 5520 ctcactaggt gaaacgtgcc acgggcctgt ctcaagcaat ctagctctgc ttgacacagt 5580 atctcataga agcaattcta tggggggact ggattctgac tgccgacact cgcaagagaa 5640 gttcggcatc cc 5652 //