ID AY789138; SV 1; linear; genomic RNA; STD; VRL; 5914 BP. XX AC AY789138; AY682101; XX DT 01-FEB-2005 (Rel. 82, Created) DT 22-DEC-2005 (Rel. 86, Last updated, Version 7) XX DE Mint virus X, complete genome. XX KW . XX OS Mint virus X OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-5914 RX DOI; 10.1016/j.jviromet.2004.11.006. RX PUBMED; 15664053. RA Tzanetakis I.E., Keller K.E., Martin R.R.; RT "The use of reverse transcriptase for efficient first- and second-strand RT cDNA synthesis from single- and double-stranded RNA templates"; RL J. Virol. Methods 124(1-2):73-77(2005). XX RN [2] RP 1-5914 RX DOI; 10.1007/s00705-005-0586-x. RX PUBMED; 16096710. RA Tzanetakis I.E., Postman J.D., Martin R.R.; RT "Mint virus X: a novel potexvirus associated with symptoms in 'Variegata' RT mint"; RL Arch. Virol. 151(1):143-153(2006). XX RN [3] RP 1-5914 RA Tzanetakis I.E.; RT ; RL Submitted (22-OCT-2004) to the INSDC. RL Dept. of Botany and Plant Pathology, Oregon State University and USDA-ARS, RL 3420 Orchard Ave, Corvallis, OR 97330, USA XX DR MD5; 013dae2718e7e34af56c254c5dc3ec2d. XX CC On Feb 1, 2005 this sequence version replaced gi:56067322. XX FH Key Location/Qualifiers FH FT source 1..5914 FT /organism="Mint virus X" FT /mol_type="genomic RNA" FT /clone="NCGR MEN 454" FT /db_xref="taxon:301865" FT 5'UTR 1..69 FT CDS 70..4008 FT /codon_start=1 FT /product="replicase" FT /note="p148; contains methyltransferase, helicase and FT polymerase signature motifs" FT /db_xref="GOA:Q5G7H3" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q5G7H3" FT /protein_id="AAW67746.1" FT /translation="MALIRQTLDQFTDVSIKSVMQQQAYDGFKTTLARATRINPFALPS FT ASADALERFGIATSPFAARLHTHAAAKAVENRLLEIVGALLPKEPVTFYFLKPQKRDPM FT RRNPRIGDFFHNQIIEPRDVARYEPSTLRESITAPTTSVVYISDSLHFLPFHFLVSLFA FT HNPVVQTVHATVVLPPEALHKHPSQNPHIYSINYDFDGFQYIPGTHGGGAYHHEFKQLD FT WLKVGKLKHVLADGTTQTITCQMVESLGANHLFTFCRGDLITPRVRTFSADQYVILPKL FT FHPKQLNVTRPLHSTFANQLLTYVLSLKTVTLTDVFAKIRQLIPTSELHRYQPEDVVHI FT ANFFYFASQRPKLCNYDQIVDDSLFNSDWRWLKSHIRYLWEEVFGQSDFKKLLKTLDWT FT PFTYSLEVEEHFVQSPVMFRTTPFHNLRDDVWNLSDAGPTLDDAPCEAPDAPAPTTPPA FT HSSAQDGPPSTSHPTLDPETFPWSACAPLLNACGFRGDELQYEVSGLLIEPIRHVQSLP FT RLDEALLPLAPCLIAKLREMRREPVMFTFDRKRATAYGSDVKNSRIGALLRNQTLEWKT FT TFSAKCEEIERTISLTVIHGAGGSGKSAFLQQWLRDQGKGNGTVSLCLPTVELRSDWMR FT KVPELHSREFRTFEKALVQPSSRVVIMDDHTKFPAGYIEAFVAMHPETQALILTGDPKQ FT SAYHEDNDQACIAHLEPASDALGAACRYYLNATHRNRRDLANKLGVYSEVDGVTRITHS FT AIPMQGWPILAPSHAKKLCLSELGNRAYSYAGCQGLTTPSVQILLDSNTPLCSDAVLYT FT ALSRARDAIHFLNTGPTSSDFWAKLDSTPYLKAFLRVDKEEPAPEPVAREPEAAPVPPP FT RTHFPVEPKTTLLEPMIAELTDKYEREMHDSRHGHTNCIQTEDLTVQLFQHQQARDEAL FT LFKTIEKRIALSTPRDNEKELLLKKDIGDILFLNYQRAMKLPADPIPFSEELWDSCERE FT VQHRFLSKPVSAIINGRDRQSPDFDEHKVALFLKSQWVKKTEKIGRLDVTAGQTIASFM FT QQTVMLFGAMARYMRRIRMIYQPDNIFITCENTPDDLNEWVLERWNFDGRAHSNDFTAF FT DQSQDGAMLQFGVIKAKHHNIPESILDAYIAIKTHAHIFLGTLTIMRLSGEGPTFDANT FT ECAIAYHHTKYDVGPEVSQLYAGDDMAQDRPPVEKPSFQLLAGRLKLTSKEVSHKQIPG FT DFATFCGWNITPKGIMKDPMKLYASLQLAKSLGNTKEVKTAYAHDLHYAYRMGDELQEV FT LDERGACLHQATTRELTIMGCSEILNSF" FT CDS 4038..4679 FT /codon_start=1 FT /product="TGB 1" FT /note="p23; contains signature helicase motifs" FT /db_xref="GOA:Q5G7H2" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q5G7H2" FT /protein_id="AAW67747.1" FT /translation="MDSYRAELASAFTRTSLPLSKPIVVHTVAGAGKTTFIRRLIRHAP FT FPTAITGGTPDPPHISGQRITAPPGPANIVDEYPLVDWAGADVIFADPLQHRGPTLPAH FT YTSSITHRFGRATCELLSKFGITAESNKEDEVFFGWAFADDPEGAVICLDAEAQSLASW FT NGLEHLKPCEALGATFPVVTVISGTPLEEADAVDRYIALTRHTRLLRILL" FT CDS 4679..4999 FT /codon_start=1 FT /product="TGB 2" FT /note="p11" FT /db_xref="GOA:Q5G7H1" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q5G7H1" FT /protein_id="AAW67748.1" FT /translation="MPLAPPPDYSKAVLAVAVGLAAALLVHQLTRSTLPHSGDNIHSLP FT FGGSYVDGTKRIHFGGPSRGSSGHLWLPALIVAILPGIIWLGRPRAAHVCRCPLCAAAR FT PP" FT misc_feature 4715..4768 FT /note="Region: transmembrane domain/helix" FT CDS 4827..5114 FT /codon_start=1 FT /product="TGB 3" FT /note="p10" FT /db_xref="GOA:Q5G7H0" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:Q5G7H0" FT /protein_id="AAW67749.1" FT /translation="MSTAPSAFTSGGHHAAAPAIFGCLPSLLPYCRASFGWAGLALLTF FT AAALFALRPAPPDCTIVVTGHSLTVSGCVGHRGAELLLQGLSSRFIRNHD" FT misc_feature 4880..4939 FT /note="Region: transmembrane domain/helix" FT misc_feature 4923..4982 FT /note="Region: transmembrane domain/helix" FT CDS 5107..5793 FT /codon_start=1 FT /product="coat protein" FT /note="p24" FT /db_xref="GOA:Q5G7G9" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q5G7G9" FT /protein_id="AAW67750.1" FT /translation="MTNPTDDAAAAAAAAAASAAKGKETALDSLGPPDPQFLKDFSYVV FT ATDSVATRGMVEAIRGKWERLGVPAASFFGAALQLALACSDSHASSLTVLVGECAAAPS FT VGLRDLAASVKTICQLRHFCRFYAKFVWNYRVTHDLPPASWAAQGFPFEARFAAFDFFD FT GVTNSAALEPAQGLIRPPTEIELKAAHTGKFVALATSGTSSLTLSNHAAVTHGRAETAR FT PTILPP" FT 3'UTR 5794..5914 XX SQ Sequence 5914 BP; 1240 A; 2062 C; 1438 G; 1174 T; 0 other; gaaaacaaac caaacgcacc agtcaagccc ctagcgaact cgaatctgcc tgcccagcta 60 gacttcgcca tggccctcat cagacagacg ttggaccaat tcacggacgt gtctatcaag 120 tctgtcatgc agcaacaagc gtatgacggc ttcaagacaa cactcgcccg agccacccgc 180 atcaacccgt tcgccctacc gtcagcgtcg gctgacgcac tagagcgttt cgggatcgcc 240 accagtccgt tcgccgcccg cttacacacg cacgccgccg ctaaggcagt cgaaaatcga 300 ctgctcgaga ttgtaggagc cctactccca aaggagcctg ttaccttcta cttcctcaag 360 ccgcaaaagc gtgaccccat gaggcgcaac cctcgcatcg gtgatttctt ccacaaccaa 420 atcatcgaac cgcgggatgt cgctcgttac gagccatcta ccctccggga gtccatcaca 480 gcaccgacca ccagcgtcgt gtacatctct gactccctcc acttcctgcc cttccacttt 540 cttgtttccc tgtttgcgca caatcccgtt gtgcagacag tccacgccac cgtcgtacta 600 ccgcccgaag cgctccacaa acatccatca cagaaccctc acatctactc catcaactat 660 gacttcgacg gtttccagta catcccaggc acacacggtg gcggggctta ccaccacgaa 720 ttcaaacagc ttgactggtt aaaagttggt aagctcaaac acgtcctcgc ggatggtacc 780 acgcagacca tcacttgcca gatggtggag agcctgggcg ccaaccatct gttcaccttc 840 tgccgaggcg accttatcac cccgagagtc cgcacttttt ccgcggacca gtacgttata 900 ctgcccaaac tctttcaccc aaagcagttg aacgtcaccc gccccctcca ctccaccttc 960 gcgaaccaac ttctcacgta cgtcctgagt ctaaagacgg tgactctcac agacgtgttc 1020 gcgaagatcc gtcagctcat accaacgagt gagctgcacc gctaccaacc cgaagatgtg 1080 gtgcacatcg ccaacttctt ctacttcgcg tcccagagac ccaaattatg caattacgac 1140 cagatcgtcg acgactcctt attcaactcc gactggcgtt ggctgaagag tcacatcagg 1200 tacctctggg aggaagtttt cggccagtcc gacttcaaga aactcctcaa aacacttgac 1260 tggacccctt tcacatactc gctcgaagtg gaggagcact tcgtccaaag cccggtcatg 1320 ttcaggacca cgcccttcca caatttgcga gatgatgtct ggaacctctc cgatgcaggc 1380 cccaccctcg atgacgcgcc ctgtgaggcc cccgacgccc ccgcgccgac aacaccgcca 1440 gcacatagct cggcccagga cggcccgccc tccacatcac acccgacgct ggacccggaa 1500 acattcccgt ggtctgcgtg cgcgccactc ctgaacgctt gcggcttccg gggtgacgag 1560 cttcaatatg aggtcagcgg gctcctcatc gaaccgatcc gccacgtaca gtcgctaccc 1620 cgcctcgatg aagcgctgct acccctcgcc ccttgcctta tcgccaagct ccgcgaaatg 1680 cgccgcgaac ccgtgatgtt caccttcgat cgcaagcgcg ccactgctta cgggagcgac 1740 gtcaagaaca gccgcatcgg agccctcctg cgcaatcaaa cccttgagtg gaagaccact 1800 ttctccgcca agtgcgagga aatcgagcgc acaatctcac tcaccgtcat ccacggagct 1860 ggtggttccg gaaagtctgc ctttctgcag cagtggcttc gcgaccaagg aaaaggcaat 1920 ggcactgtca gcctttgcct gcccactgtt gagctgcgct ccgattggat gcgcaaggtg 1980 cctgagctcc actcgagaga gttccgcacc ttcgaaaagg ctttggtgca gccgtcatca 2040 cgcgtcgtca ttatggacga tcacacgaaa tttccggcag gctatatcga agccttcgtc 2100 gcaatgcacc cggaaactca ggcgctcatc ctcactggag accccaaaca gagcgcttac 2160 cacgaagaca acgaccaggc ttgcatcgcg cacctggagc ctgctagcga cgcgctcgga 2220 gctgcgtgcc gctactatct gaacgccacc catcgcaacc ggcgtgacct cgcaaacaag 2280 ctgggtgtgt actctgaagt cgatggggtc actcgtatca cccactctgc gatacccatg 2340 cagggctggc ccattctggc accgtcacat gctaagaagc tgtgcctctc cgagttaggc 2400 aatcgtgcct attcctacgc cggctgccag ggcctcacga cgccgtccgt ccagattctg 2460 ctggactcca acacgcctct gtgtagtgat gctgttctct acaccgccct ttcgcgcgcc 2520 cgcgacgcca tccacttcct caacaccggc ccaacatcct ctgacttctg ggccaagctt 2580 gattccacac cctacctcaa agccttctta agggtggata aggaagaacc tgctcccgag 2640 cctgtcgccc gtgagcctga ggccgccccc gtccccccgc cacggacgca cttcccggtc 2700 gagcctaaaa caacgctgct cgaacccatg atcgccgagc tcacggacaa gtatgagcgc 2760 gagatgcacg attcacgcca tgggcacact aactgcatcc aaactgaaga cctcacggtg 2820 cagctcttcc agcaccaaca ggcgcgagac gaggctctac tcttcaagac catcgagaag 2880 aggatagccc tctccacacc gcgcgacaat gagaaagagc tgctgctcaa gaaggatatc 2940 ggggatatcc ttttcctgaa ttaccaaagg gctatgaagt tgcctgccga ccccatcccc 3000 ttctccgagg agttatggga ctcctgcgag cgtgaggtgc agcaccgctt cctatctaag 3060 cccgttagcg ccatcatcaa cggaagagac cgtcaaagtc ccgactttga cgagcacaaa 3120 gtggccctct tcctcaaatc gcaatgggtc aagaaaaccg agaagatcgg caggctggac 3180 gtcactgccg gccaaactat cgcctccttc atgcagcaga cggtcatgct cttcggagcc 3240 atggccagat atatgaggcg gatccgcatg atctaccagc ccgacaacat cttcatcacg 3300 tgcgaaaaca cgcctgatga tctcaacgag tgggtgctcg agcgctggaa ttttgacgga 3360 cgcgcccact ccaatgactt caccgccttc gaccagtcac aagatggagc tatgctccag 3420 tttggggtca tcaaggcgaa gcaccacaac atcccggagt ccattcttga tgcttacatc 3480 gccatcaaga ctcatgccca catctttctg ggcactctca ccatcatgag actctcaggg 3540 gaaggcccga ctttcgacgc taacactgag tgcgctatcg cgtaccacca caccaagtat 3600 gacgtcgggc ctgaagtcag ccagctctac gcgggtgatg acatggcgca ggatcggccg 3660 ccggtggaga aaccgtcttt ccaactactt gcaggccgcc tcaagctcac ctccaaagaa 3720 gtctcgcaca agcaaattcc cggagacttc gctacatttt gcggctggaa catcacccca 3780 aaagggatca tgaaggatcc catgaaactg tacgcctcac tgcaactcgc caagtccctg 3840 ggcaacacta aggaggttaa gaccgcctat gcccatgact tacattacgc gtaccgcatg 3900 ggagatgagc tccaggaggt gctggacgaa cgtggcgcgt gcttgcacca agccaccaca 3960 cgcgagctga ccatcatggg ctgctcggaa atcctcaact ccttctaata caggggttaa 4020 gttccccggt atctttgatg gattcatacc gcgcggaact tgcatctgct ttcaccagaa 4080 catcactccc tctatccaaa ccaatcgttg tgcacaccgt cgcaggcgcg ggtaagacca 4140 cattcattcg ccgcctcatc cgccacgcgc ccttccctac cgccatcacc ggggggactc 4200 ccgatccgcc acacatcagc ggccaacgca tcacggcccc acctggtccc gctaacattg 4260 tcgacgagta cccccttgtt gattgggcgg gtgccgacgt tatcttcgcg gaccctctgc 4320 agcatcgcgg gcccacgctg cctgcccatt acacgtcctc catcactcac cgcttcggcc 4380 gcgccacttg cgagttactg agcaagtttg gcatcactgc ggaatcgaac aaggaggacg 4440 aagtcttctt tgggtgggct ttcgctgacg accccgaagg tgccgtcatc tgccttgacg 4500 cagaggcgca atctctcgcc tcctggaacg gcctggagca cttgaagccc tgtgaggctc 4560 ttggcgccac gttccctgtc gtcaccgtca tttccgggac gccccttgag gaagcggacg 4620 ccgtcgaccg atacatcgcg ctcacgcgtc acacccggct tctccgcatt ctcctctgat 4680 gcctctcgcc ccgcccccag actattcgaa ggctgtgctc gccgtcgccg ttggactcgc 4740 cgcagcgttg ctggttcacc agctcacccg gtcgacgttg ccccactcgg gagacaacat 4800 ccactcgctg cctttcggcg gctcctatgt cgacggcacc aagcgcattc acttcggggg 4860 gccatcacgc ggcagctccg gccatctttg gctgcctgcc ctcattgttg ccatactgcc 4920 gggcatcatt tggctgggcc ggcctcgcgc tgctcacgtt tgccgctgcc ctctttgcgc 4980 tgcggcccgc cccccctgat tgcaccatcg ttgtgaccgg ccactcgctc acggtttctg 5040 gctgtgtcgg tcaccgcggg gctgaactcc tgctacaggg gttaagttcc cgcttcatcc 5100 gaaaccatga ctaacccgac tgatgatgcc gctgctgccg ctgctgccgc cgccgcctca 5160 gcagctaaag ggaaggagac cgccctcgac tcgctcgggc cgcccgaccc tcagtttctc 5220 aaggatttca gttacgtggt cgccaccgac tcggtcgcca cccgtggtat ggttgaggcc 5280 atccgcggga agtgggaacg ccttggcgtt ccagccgcgt ccttcttcgg cgccgctctg 5340 caactcgccc tcgcttgctc cgactcccac gcctcctcac tcacggtcct agtcggcgag 5400 tgtgccgccg cacctagtgt cggcctccgt gacctcgccg cctccgtgaa gaccatctgc 5460 cagctccggc acttctgccg attctacgcg aagttcgtct ggaactatcg cgtcacgcac 5520 gacttgccgc cggcatcgtg ggccgcccaa ggcttccctt tcgaagcccg cttcgccgct 5580 ttcgacttct ttgacggagt cacaaattct gccgctctcg agccggccca gggtttgatc 5640 aggccgccca ctgagattga gctcaaagcc gcgcacactg gcaagttcgt tgcgctcgcc 5700 acctcgggga catcgagcct cacgctcagc aaccacgccg ccgtgaccca cggccgcgct 5760 gagaccgctc gccccaccat cctcccgcca tgatgcggga tgctgccccg cgtgaaggaa 5820 acacgccctg gtatggattc tgacatgacc aggttgaaac cccacgacac gatcgcccga 5880 aacttaatga cggaacgtgg ataccccaag aggt 5914 //