ID AY713379; SV 1; linear; genomic RNA; STD; VRL; 7494 BP. XX AC AY713379; XX DT 18-JAN-2005 (Rel. 82, Created) DT 22-APR-2009 (Rel. 100, Last updated, Version 3) XX DE Apricot pseudo-chlorotic leaf spot virus isolate Sus2, complete genome. XX KW . XX OS Apricot pseudo-chlorotic leaf spot virus OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Trivirinae; Trichovirus. XX RN [1] RP 1-7494 RX DOI; 10.1094/PHYTO-95-0420. RX PUBMED; 18943045. RA Liberti D., Marais A., Svanella-Dumas L., Dulucq M.J., Alioto D., RA Ragozzino A., Rodoni B., Candresse T.; RT "Characterization of Apricot pseudo-chlorotic leaf spot virus, A Novel RT Trichovirus Isolated from Stone Fruit Trees"; RL Phytopathology 95(4):420-426(2005). XX RN [2] RP 1-7494 RA Liberti D., Marais A., Svanella-Dumas L., Ragozzino A., Candresse T.; RT ; RL Submitted (09-AUG-2004) to the INSDC. RL IBVM, UMR GD2P, Virology Laboratory, INRA, BP81, 71 avenue Edouard RL Bourlaux, Villenave d'Ornon 33883, France XX DR MD5; 164ff4654ad92c61c30563f07752aff3. XX FH Key Location/Qualifiers FH FT source 1..7494 FT /organism="Apricot pseudo-chlorotic leaf spot virus" FT /host="Prunus salicina" FT /lab_host="Prunus persica GF305" FT /isolate="Sus2" FT /mol_type="genomic RNA" FT /country="Italy" FT /db_xref="taxon:307677" FT 5'UTR 1..107 FT gene 108..5786 FT /gene="ORF1" FT CDS 108..5786 FT /codon_start=1 FT /gene="ORF1" FT /product="216 kDa protein" FT /note="putative RNA-dependent RNA polymerase" FT /db_xref="GOA:Q5IJA3" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR005123" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008744" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR037151" FT /db_xref="UniProtKB/TrEMBL:Q5IJA3" FT /protein_id="AAW55581.1" FT /translation="MAFSYRTPQEELLNRLPQSQQEILGTLQFERIQKEEELKVNNFSY FT SLPEKGREWFTKSGVYLSPYSYNVHSHPCCKTLENHILYNVAASYLSKYAYVACLSIKA FT NKMSKMEKLGRSSVRNYDIINRLVVSKDKARYGPSVSPERVGCPKNSNLFIHDEIHYWN FT KGQLESFLSVTKPRNLWATLVFPPEILAGYRSSILPFIYQFEIQGKNLIYLPDGVRSES FT YSQPLENGYLLNTNSISVENKKTGGFKRYQISLIYSLGSHHLFHIFPCENLIPEETRRF FT GPYDLFDVGALFVKPVRVPIQDFPLSTFKKIFIYLSSLKKPDEQSAVAKLRQLCDSDVS FT IESVFLIQEFAQRVEKDGIQRWSCSFWEHIKDRFFDALPYGHVLEKIGLADDFSRRLMQ FT LKPLAFDIHATDRPNSVHFLFGSTWGDVQENDALIAQIKFGRRRVANGEIAIQGTTGIL FT DAVTKRFKKMDNYPSDFFSDSLAATPLRLSYDNNLSTKAAQTFVILRSKRSELNILKSD FT KKILRIGWNEDRTFVKKTEFEMERINRAKHISNCALNFHVEKSALSNAAELEKKQLKSW FT SPSGSKSKGKRKNKFVFASESTSPLGKEREKRRVEAADGTKSNEVEQAKMSGNPINSLK FT EKCEVVMGRSIEFAIDMSTQLNPSPIKVEKGKEKISHSLTEEFCSHGIVVKKGYPCEGL FT KDEILSLPLAQLKGKKGGYFVLDYPMVYFHNNVSYPSFEATMKIKECILKARRDWNIDF FT NASLIQIYEKGSIIGMHKDNEECYDDDGVLTLNVKGNATFSVSCHDNVIELKEGNELLM FT PPGYQKKFKHGVKSESEGRISVTLRVHKRDFSFRSKVGFIKGKYDCMISSLASLIRKDQ FT DEMCAFVPNVLNRCISNKGCSIDDLKEMCMAYEFKVPVEGDCGSIEVGSHGMPLGRLNL FT RGNHFSVVSSRRSNLDSLANSKSDKDTSLVNSHVWLNFRKRFLAVEPDYTKTEVKCDLL FT RAVKLLKSLNEGMTGIVSHNAAHEGWRMIKGVNSPAEMRKLTQILKGLDDDDVEWKERS FT NLIKELNFINKTVYGVFGFAGSGKSNAIQNLIESEFKGSRGILVVCPRRFLASDWSEKG FT VDSKDIKTFESALKMDIKGKNVFIFDEVSLLPKGYVDLMILKMHMEGILKTSTIICLGD FT PLQASYFSAKDDNILSKESEIKRLFKDGVNYKWYSYRINKFIASKLGVCGMNEFIGIDN FT QSVTYKDMPSAFHFMDSAKNHPEVVLVASMIEKELYSNYQNVMTFGESQGLTFGCGIIV FT LSEEAKLCSDAHIMVAITRFRKGFCFVLGSKGGKEDNLRTLKGGLLQRIVSNLGASREF FT ITNMSSVPLKLSEKVTKKGAGIDEMDREERLQGDAWLKSMIFLGKRYHLIKPLGQVVEL FT EDSAIKCHIPVCSVQTLGPELGRIQAREYREFKGKNGWSNQLERRLAPVLWRAPCKVNQ FT AMSHEAIYPRHRMDDDLTFLAAIKKRLRFASVAENYNKFRASKARGQYLLKVFLEKIQI FT KSGRNQSLLDLCRQEFEETKLSKSSATIGAHSQRSDPDWPLDKIFLFMKSQLCTKFEKR FT FTEAKAGQTLACFQHEILVKFSPWCRYTEKILSSCLPDNFYVHQRKNFSELEKFAKRFS FT NGSVCVESDYTAFDVSQDHTILAFEVEFLRYVGWDEKIIESYIKMKCTLGCRLGGFAIM FT RFTGEFSTFLFNTLANMAFTFCRYQVPSGTPICFAGDDMCALRDIKEIPNHEHILEKLS FT LKAKVNRTKVPMFCGWRLCSDGLIKEPCLIYERLQVAIENNRLMEVIDSYFLEFSFAYK FT LGERLYSYLEIEQLNYHQVLTRFFIKNKHLLRGESKANISELIWLSDEDGDASEGSQVK FT DRRRGYSNRWSEKLQNLF" FT gene 5698..7071 FT /gene="ORF2" FT CDS 5698..7071 FT /codon_start=1 FT /gene="ORF2" FT /product="51 kDa protein" FT /note="putative movement protein" FT /db_xref="GOA:Q5IJA2" FT /db_xref="InterPro:IPR001815" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:Q5IJA2" FT /protein_id="AAW55582.1" FT /translation="MAMQVRGHKSRIAEGDIPIAGVKSSRIYSDVSPFKRATDLMIHWN FT EFVFKIMPEDIRDSGFRLASIPVVPITEINNILKKRETTNYVHWGALSISIDALFKKNA FT GVTGQCYVFDKRWTTFDQALLQKFEFNLDKGSATMITSPNFSVALDDPGLTDSICVAVV FT FENLNFKKDNYPISVRVGNMCRFFDSFLSCIKNKDDSNLKLDSSNVEALGLGEFGFDGD FT TKVNELFKYVQAVPTTAFHTRKFKIPRGFLGLMGKKKVKSFEFSSKSVKERRRRRSQAP FT IHEQHGIREKENFADVRSTASEDESDRTFGKLERRRKDKGIKAGSAYSEGELIDNISSR FT EFLFAQQDKKPQDVSSTESSQQGGHPTEGIFGSGGGTSAWKDRGNSGTDTSVNIRKHRN FT SRDVRANRVPKRGGGSERTGGFHFASELQPEDGSQSDQNVQDILHGWKHQWDDLQAAL" FT gene 6755..7336 FT /gene="ORF3" FT CDS 6755..7336 FT /codon_start=1 FT /gene="ORF3" FT /product="22 kDa protein" FT /note="putative coat protein" FT /db_xref="GOA:Q5IJA1" FT /db_xref="InterPro:IPR008879" FT /db_xref="UniProtKB/TrEMBL:Q5IJA1" FT /protein_id="AAW55583.1" FT /translation="MSALLNLRSKADTQLRAFLAQEGGPLHGKTGATVELILQSIFANI FT AIQGTSEQTEFLNEVVEVKEPGDSTLLQSYNLRTVVNLIKMFKTSSTDGNINGMTFRQL FT CEAFAPEARDGLVRLKYMGVFTNLYGTMPEVGGKHPELMFDFNRGLNMLIMDQKRRTLI FT TNMHRRLMQTEHAKSENEAKISAVSTDLCV" FT 3'UTR 7337..7494 XX SQ Sequence 7494 BP; 2406 A; 1305 C; 1751 G; 2032 T; 0 other; taaacaagtt ctgttaacgc cagaactgcg ctcaaggagc atcaatctga atgattgagt 60 aaagaaaata acaaggagga aaccaaacaa accgtttgga gaaaactatg gcattctcat 120 acagaacgcc acaggaggag ctcttgaaca gactgcccca gtctcaacaa gagattttag 180 gaactttgca attcgaaaga atccaaaaag aggaagaatt gaaggtgaac aatttttctt 240 actcactacc agagaaaggc cgcgagtggt ttaccaaatc gggtgtttat ctttcacctt 300 actcttataa tgttcattca catccttgct gcaagactct agaaaatcac atactatata 360 atgtagcagc tagttatcta agtaaatatg cctatgtagc ttgcctcagt ataaaggcaa 420 acaagatgag taagatggag aagctgggga gatctagtgt gcgcaattat gacatcataa 480 ataggctagt tgtttcaaaa gacaaagcta ggtatgggcc ttctgtgtca ccagagaggg 540 tcggctgtcc aaagaattcc aatctgttca tccacgatga gattcattat tggaataaag 600 gtcagcttga gtcttttctg tcagtaacaa aacctaggaa tctatgggca actttggttt 660 ttccacccga aattctggca gggtacagat cgtctattct tccatttatt tatcaatttg 720 aaattcaggg gaaaaatctt atatatctgc ctgatggtgt gaggagtgaa agttactcac 780 agcctttgga gaatggttat cttttgaata ccaactccat ttcagtagag aacaagaaaa 840 caggaggttt caagaggtat caaatctcac tcatttattc tctcggatca catcatctgt 900 ttcacatatt tccttgtgag aatttgattc ctgaagaaac aagaagattt ggcccttatg 960 acctctttga tgtgggggct ttgtttgtta agccagtaag agttcctatt caagatttcc 1020 ctctcagcac attcaagaag atattcatat accttagttc actcaagaaa cctgatgagc 1080 agtcggcagt ggctaaactc agacaattgt gtgactcaga tgtttctata gagtcggtct 1140 tcctcattca agaatttgca caaagagtag agaaagacgg aattcaaagg tggtcgtgtt 1200 cattttggga gcatattaaa gacaggtttt ttgatgcatt accttatgga catgtgctag 1260 aaaagatagg ccttgctgat gatttttcaa ggaggttgat gcaattaaag cctcttgcat 1320 ttgacattca tgctacagac agaccaaatt ctgtgcactt cttatttgga tcaacatggg 1380 gagatgttca agaaaatgat gctctaatag ctcaaattaa atttgggaga aggagggtgg 1440 cgaatgggga gatagcaatt caaggaacca ctggtattct tgacgctgtc actaagagat 1500 tcaaaaaaat ggataactat ccatctgact tcttttcaga tagtctggcc gccactccat 1560 tgagactatc ctatgacaat aatttgtcca ccaaagctgc tcagactttt gtcattttaa 1620 gaagtaagag gtcagagcta aacattctca aaagtgacaa gaagatcctg aggatagggt 1680 ggaatgaaga caggaccttt gttaaaaaaa cagagttcga aatggaacgg atcaacagag 1740 caaaacatat ttcaaattgt gctctcaatt ttcatgtgga aaaatctgct ctttcgaatg 1800 cagctgagtt ggaaaagaaa caactcaaat catggtctcc atctggctcc aaatctaagg 1860 ggaagaggaa aaacaaattc gtgtttgctt ctgaatccac ttccccatta ggaaaagaaa 1920 gagaaaagag aagagtagag gctgctgatg gaaccaagtc caatgaggtg gagcaagcta 1980 aaatgtctgg taatcctatc aatagcctta aggagaaatg tgaggtggtt atggggcgtt 2040 ccattgagtt tgctattgac atgagcactc aactcaaccc aagtcccatc aaagtggaaa 2100 aagggaaaga gaagatttcc cattccctaa ctgaagaatt ctgttctcat ggaatagtag 2160 ttaaaaaagg ttacccttgt gaaggcctca aagatgaaat actttccctg ccactagcgc 2220 agcttaaagg aaagaaaggt ggctactttg tccttgatta tcccatggtc tactttcaca 2280 acaatgtttc ttacccgtcg ttcgaagcaa caatgaaaat caaggaatgc atccttaagg 2340 caaggaggga ctggaacata gatttcaatg catctctgat tcagatttat gaaaaaggct 2400 ccatcattgg gatgcacaaa gataatgagg aatgttacga cgatgatggg gtcttaacat 2460 tgaatgttaa gggcaatgca acattctcag tgagctgtca tgataatgtg attgaactga 2520 aagaaggcaa tgagcttttg atgccgcctg gctatcagaa aaagttcaaa catggagtca 2580 aaagtgaatc agaagggaga ataagtgtta cattgagagt tcacaaaaga gacttttcat 2640 tcagaagcaa ggtgggattc atcaaaggaa agtacgattg catgatatca tcattggcta 2700 gcctaatcag aaaggatcag gacgaaatgt gtgcattcgt tcctaatgtc ctgaaccgat 2760 gcatatccaa caagggttgc tcaatagatg acctcaaaga aatgtgtatg gcttatgaat 2820 tcaaggttcc tgtggaggga gattgtggat cgattgaagt cggctctcat gggatgccgc 2880 ttggaaggtt aaatttgaga ggtaaccatt tttcagtggt ttcatcccgc agatctaatt 2940 tggactccct ggcgaattct aagtccgaca aagacacttc actcgtgaac tcgcatgtct 3000 ggttaaattt ccggaaaaga ttcttagctg tggaaccgga ttacaccaaa actgaggtga 3060 agtgtgattt gctgagagca gttaaactac tcaaaagctt gaatgagggt atgacaggga 3120 ttgtttccca caatgctgct catgagggtt ggaggatgat caaaggtgtg aacagtccag 3180 ctgaaatgag aaaactcact caaattttaa agggtcttga tgatgatgat gtggagtgga 3240 aagaaaggtc caatttaatc aaggagctca attttataaa caaaactgtt tatggagtgt 3300 ttggctttgc tggttctggg aaaagtaatg ccattcaaaa tctcatagaa tctgaattca 3360 aaggatctcg gggcattttg gtggtgtgtc cccggagatt cttggctagt gattggagtg 3420 aaaaaggtgt tgattcaaag gacattaaaa catttgaaag tgccttgaag atggatatca 3480 aagggaagaa tgtcttcatt tttgatgaag tgagtttgct gcctaagggt tacgttgatc 3540 tgatgatttt gaagatgcac atggaaggta ttctcaaaac atccactata atctgcttgg 3600 gggaccctct gcaagcatct tactttagtg caaaagatga caatatactc agcaaagaga 3660 gtgaaatcaa gagacttttc aaggatggag tcaattacaa gtggtacagc tacaggatca 3720 acaaatttat tgcttcaaaa cttggtgtct gtggaatgaa tgagttcata ggcattgata 3780 accagagtgt cacatacaaa gatatgcctt cagccttcca cttcatggat tccgcaaaaa 3840 atcatccaga ggttgtattg gtggcaagca tgatagaaaa agagctctat tcaaactatc 3900 agaacgttat gacttttgga gaatcgcagg gcttaacttt cgggtgtggc ataatagttc 3960 tgtctgaaga agcaaaattg tgttctgatg cccacataat ggttgcaata acaagattca 4020 gaaaaggatt ctgttttgtg ttgggatcaa aaggtggaaa ggaggacaat ctgagaacat 4080 taaagggtgg tttattgcag aggatagttt caaatttagg agcatcgaga gaattcatca 4140 ccaatatgtc atctgtccca ctcaaattga gcgaaaaggt tacaaagaaa ggtgcaggaa 4200 ttgacgagat ggacagggag gagaggctcc aaggtgacgc ctggctgaag tcaatgatct 4260 ttctaggaaa aaggtaccat ctaataaaac ctcttgggca ggtcgtagaa cttgaagatt 4320 cagcaatcaa gtgccatatt ccggtgtgct ccgttcaaac tctaggtcct gaattgggaa 4380 gaattcaagc aagggagtat agagaattta aagggaagaa tggatggtca aatcaattag 4440 agaggaggct ggcccctgtc ctgtggagag ccccatgcaa agtgaatcaa gcaatgagtc 4500 atgaggcaat ataccccaga cacaggatgg atgatgattt gacttttctt gctgcaatca 4560 aaaagaggct ccgatttgct agcgttgcag aaaactacaa caaattcaga gcctcaaaag 4620 ccagagggca gtacttactg aaggtgtttt tggagaagat tcaaattaaa agtggaagaa 4680 atcagagttt gttggatctg tgcaggcaag aatttgagga gaccaaactt tcaaaaagct 4740 cagcaacaat cggtgcacac tctcaaaggt ccgatccgga ctggcctctt gacaaaatat 4800 ttctgttcat gaagtctcag ttatgcacca aattcgaaaa gaggtttacg gaggctaaag 4860 caggccaaac cctggcttgt ttccagcatg aaattttggt gaaattcagt ccatggtgta 4920 gatatactga gaagatactt tcaagttgtc tacctgacaa cttttatgtg catcagagga 4980 agaacttctc cgaattggag aaatttgcta aaagattttc aaacggatcc gtgtgtgtgg 5040 agtctgatta tacagcattt gacgtttcgc aagaccacac aatcctggca tttgaggttg 5100 aatttctaag atatgtggga tgggatgaaa aaatcataga gagttacatt aaaatgaagt 5160 gcacattggg ctgtagactg ggaggatttg caataatgag attcactggg gaattctcaa 5220 ctttcctatt caatactctt gccaacatgg cgttcacttt ctgcagatac caagttccat 5280 ccggaactcc gatatgcttt gctggagatg atatgtgtgc attgagagac atcaaagaaa 5340 ttccaaatca tgagcacata ctggaaaagc taagtttgaa ggctaaggtc aacagaacaa 5400 aggttccaat gttttgtgga tggagattgt gctcagatgg tctaatcaaa gagccgtgtt 5460 tgatatatga aaggctgcaa gttgcaattg aaaataacag attgatggaa gtcatagatt 5520 cctactttct ggaattttca tttgcctaca agttagggga gaggctctat tcatatcttg 5580 aaattgaaca gttgaattat catcaagttc tgacaaggtt tttcatcaag aacaaacacc 5640 tgttaagagg tgaatcaaaa gcaaacatat ctgaattgat ctggctctcg gacgaagatg 5700 gcgatgcaag tgaggggtca caagtcaagg atcgcagaag gggatattcc aatcgctgga 5760 gtgaaaagct ccagaatcta ttctgatgtg agtccgttca aaagggccac tgatcttatg 5820 attcactgga atgaatttgt tttcaagatc atgcctgagg acattaggga ttctgggttc 5880 agattggcct ctatacccgt tgttcctatt acagagataa acaatatact gaagaagaga 5940 gagacaacca attatgtgca ttggggggct ttgtccattt caattgatgc tttgttcaag 6000 aagaatgctg gggtaacagg ccaatgttat gtgtttgaca aaagatggac aacatttgat 6060 caagctcttc ttcaaaagtt tgaattcaac ctagacaaag gttcagcaac catgataaca 6120 tcacccaatt tttctgtagc tctggatgat cctggtttga cagattccat atgtgtggca 6180 gttgtgtttg aaaacttgaa ctttaagaaa gacaattatc cgataagtgt cagagtcgga 6240 aatatgtgca gattctttga cagcttcctg agttgcataa agaataaaga tgactctaat 6300 ctcaaacttg actcgtcaaa tgtcgaagct ttgggcctcg gtgaatttgg gtttgatggg 6360 gatacaaagg tgaatgagct tttcaaatat gtgcaagctg tgcccactac ggcttttcac 6420 acaagaaaat ttaaaatacc aagagggttt ttgggcctta tggggaagaa gaaagtcaag 6480 agctttgaat tttcatcaaa atcggtaaaa gagagaagga ggagaaggtc gcaagctccc 6540 attcacgagc agcatggtat tcgagagaag gaaaattttg ctgatgttag gtctacagcg 6600 agtgaggatg aatcagacag aacttttgga aagttagaga gaagaagaaa agataaggga 6660 atcaaagctg gatcagctta ctcagaaggg gagctcatcg ataacatatc ttcaagagaa 6720 tttctctttg ctcagcaaga taagaaaccg caggatgtca gctctactga atcttcgcag 6780 caaggcggac acccaactga gggcattttt ggctcaggag gggggacctc tgcatggaaa 6840 gacaggggca acagtggaac tgatacttca gtcaatattc gcaaacatcg caattcaagg 6900 gacgtcagag caaacagagt tcctaaacga ggtggtggaa gtgaaagaac cgggggattc 6960 cactttgctt cagagttaca acctgaggac ggtagtcaat ctgatcaaaa tgttcaagac 7020 atcctccacg gatggaaaca tcaatgggat gaccttcagg cagctttgtg aagcttttgc 7080 ccctgaggcc agagatggac ttgttaggct caaatatatg ggtgtcttca ccaatcttta 7140 tggaacaatg cctgaggttg gtggtaaaca ccctgaatta atgtttgatt ttaacagggg 7200 actaaatatg ttaataatgg accagaaaag gaggactctc atcaccaata tgcatagacg 7260 tctgatgcag acggagcatg caaaaagtga gaatgaggcc aaaatttcgg cggtttcaac 7320 tgatctctgt gtttaggaag atcaggcgtg tgtggtcatg aacaaataat taactctaga 7380 acctgtgaaa gagtataaag agtcccagtt tatcaaagga gttattggtc ctaaccaata 7440 ttggagtgtt tacatcttaa atggaatagc ctatagactt ttaaatattt ttct 7494 //