ID   AY541037; SV 1; linear; genomic RNA; STD; VRL; 1285 BP.
XX
AC   AY541037;
XX
DT   11-MAR-2004 (Rel. 79, Created)
DT   27-FEB-2006 (Rel. 86, Last updated, Version 3)
XX
DE   Barley yellow dwarf virus SGV-D RNA-dependent RNA polymerase P1-P2 fusion
DE   protein and coat protein P3 genes, partial cds; and putative movement
DE   protein P4 gene, complete cds.
XX
KW   .
XX
OS   Barley yellow dwarf virus
OC   Viruses; Riboviria; Luteoviridae; Luteovirus; unclassified Luteovirus.
XX
RN   [1]
RP   1-1285
RX   DOI; 10.1016/j.jviromet.2004.04.005.
RX   PUBMED; 15234811.
RA   Malmstrom C.M., Shu R.;
RT   "Multiplexed RT-PCR for streamlined detection and separation of barley and
RT   cereal yellow dwarf viruses";
RL   J. Virol. Methods 120(1):69-78(2004).
XX
RN   [2]
RP   1-1285
RA   Shu R., Malmstrom C.M.;
RT   ;
RL   Submitted (04-FEB-2004) to the INSDC.
RL   Plant Biology, Michigan State University, 166 Plant Biology MSU, East
RL   Lansing, MI 48824, USA
XX
DR   MD5; 2a7aae5c6ec537d53c5f793de45fa1c2.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1285
FT                   /organism="Barley yellow dwarf virus"
FT                   /isolate="SGV-D"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /db_xref="taxon:12037"
FT   CDS             <1..623
FT                   /codon_start=3
FT                   /product="RNA-dependent RNA polymerase P1-P2 fusion
FT                   protein"
FT                   /note="ORF2; low-abundance product derived from -1
FT                   ribosomal frameshift"
FT                   /db_xref="GOA:Q6QHJ8"
FT                   /db_xref="InterPro:IPR002166"
FT                   /db_xref="UniProtKB/TrEMBL:Q6QHJ8"
FT                   /protein_id="AAS55446.1"
FT                   /translation="DDCVIITERKNEHLFXGMYDHFLHYGFNMVTEQPVYELEKLEFCQ
FT                   SRPVRIGGRYRMVRRPDCMGKDSTTLLSMLNESDVKSYMSAVAQCGLVLNAGVPILESF
FT                   YRCLFRSSGYKKVSEEYIQNVISYGTDERLQGRRTYEETPITTDNRMSYWESFGVDPKI
FT                   QQLVERYFDDLTVSAQLQSVKVTTPHLQSILLSIPENTYQHHN"
FT   CDS             737..>1285
FT                   /codon_start=1
FT                   /product="coat protein P3"
FT                   /note="ORF3; translated from subgenomic RNA1; occasional
FT                   read-through of stop codon produces P3-P5 fusion protein"
FT                   /db_xref="GOA:Q6QHJ7"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="UniProtKB/TrEMBL:Q6QHJ7"
FT                   /protein_id="AAS55447.1"
FT                   /translation="MNSQGPRRNTRRNVRRRTRSVRPVVVVQAPGTGRRRRNGRRPARR
FT                   RANNLSRPTGRTEVFTFSVNDIKGNSSGVIKFGPSLSQCPALSDGILKSYHDYAITNVQ
FT                   VFYRSHASSETEGALFIELDNSCTQSALGSYINSFTITSSGSKTFTAGSINGTTMKNYL
FT                   SDQFYLLYKGKSSKATVAGQ"
FT   CDS             774..1214
FT                   /codon_start=1
FT                   /product="putative movement protein P4"
FT                   /note="ORF4; translated via leaky scanning from subgenomic
FT                   RNA1"
FT                   /db_xref="InterPro:IPR001964"
FT                   /db_xref="UniProtKB/TrEMBL:Q6QHJ6"
FT                   /protein_id="AAS55448.1"
FT                   /translation="MSEGALDQFGQWLWSKPPEPDEDEEMVDVQQEDGQIIYQDQQAGL
FT                   RYSLFQSTTSKATPAGSSNSAPAFRNVLHFQTEYLSPTTITRSQMSKYSIDRTPAPKLR
FT                   AHSLLNSTTRAHNQPWVATLTHSPSQAPDRRPSRRALLTGPR"
XX
SQ   Sequence 1285 BP; 388 A; 304 C; 282 G; 310 T; 1 other;
     gagatgattg tgtcatcata actgagagaa aaaatgaaca cctcttcmgt ggaatgtatg        60
     accatttcct acactacggc tttaacatgg tcactgaaca accagtgtac gagttagaaa       120
     aactcgaatt ctgccagtcc cgtccagtca ggattggagg cagatacaga atggttagga       180
     ggcctgattg catggggaag gacagtacca cattgttgag catgctaaac gaatcagacg       240
     ttaaatctta catgtctgct gtagcacagt gtggtcttgt cttgaatgct ggtgtaccca       300
     ttttggaaag cttctataga tgtttgttta gaagttctgg gtacaagaaa gtgagcgagg       360
     aatacatcca aaacgtcata tcatacggaa cagatgaaag gcttcaaggt agacgtacct       420
     atgaggagac acctatcacc actgacaatc gcatgtcata ttgggaatca tttggagttg       480
     acccgaagat acaacaactc gtcgagcggt acttcgacga tctaacggtt agtgcccaac       540
     tccaaagtgt gaaggtgact actccacatc tgcaatcaat cctcctctca attcctgaga       600
     acacatacca gcatcataat taattaccag atcttagccg ggtttggtat tgggtttata       660
     gttagtattc cttgcacatt aactatcacc tatttcattt acaataaagt tagcaacacc       720
     accagggaag tggtgaatga attctcaagg ccctaggcgc aacacacgaa gaaatgtcag       780
     aaggcgcact cgatcagttc ggccagtggt tgtggtccaa gcccccggaa ccggacgaag       840
     acgaagaaat ggtcgacgtc cagcaagaag acgggcaaat aatttatcaa gaccaacagg       900
     caggactgag gtattcactt tttcagtcaa cgacatcaaa ggcaactcca gcggggtcat       960
     caaattcggc cccagccttt cgcaatgtcc tgcactttca gacggaatac ttaagtccta      1020
     ccacgattac gcgatcacaa atgtccaagt attctataga tcgcacgcca gctccgaaac      1080
     tgagggcgca ctctttattg aactcgacaa ctcgtgcaca caatcagccc tgggtagcta      1140
     cattaactca ttcaccatca caagctccgg atcgaagacc ttcacggcgg gctctattaa      1200
     cgggaccacg atgaagaact atttatctga ccaattctac ctcctataca aaggcaagag      1260
     ttctaaggcc actgttgcag gtcag                                            1285
//