ID AY303786; SV 1; linear; genomic RNA; STD; VRL; 7334 BP. XX AC AY303786; XX DT 27-APR-2004 (Rel. 79, Created) DT 27-APR-2004 (Rel. 79, Last updated, Version 1) XX DE Arabis mosaic virus segment RNA1, complete sequence. XX KW . XX OS Arabis mosaic virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RP 1-7334 RX DOI; 10.1007/s00705-003-0277-4. RX PUBMED; 15098112. RA Wetzel T., Beck A., Wegener U., Krczal G.; RT "Complete nucleotide sequence of the RNA 1 of a grapevine isolate of Arabis RT mosaic virus"; RL Arch. Virol. 149(5):989-995(2004). XX RN [2] RP 1-7334 RA Wetzel T., Beck A., Wegener U., Krczal G.; RT ; RL Submitted (20-MAY-2003) to the INSDC. RL Staatliche Lehr- und Forschungsanstalt, Centrum Gruene Gentechnik, RL Breitenweg 71, Neustadt an der Weinstrasse D-67435, Germany XX RN [3] RC Sequence update by submitter RP 1-7334 RA Wetzel T., Beck A., Wegener U., Krczal G.; RT ; RL Submitted (07-NOV-2003) to the INSDC. RL Staatliche Lehr- und Forschungsanstalt, Centrum Gruene Gentechnik, RL Breitenweg 71, Neustadt an der Weinstrasse D-67435, Germany XX DR MD5; bf0487991cf7bd663098779243dbb999. DR EuropePMC; PMC2861173; 20229114. DR EuropePMC; PMC3314827; 22218961. DR EuropePMC; PMC3738963; 23867805. DR EuropePMC; PMC4729743; 26843704. XX FH Key Location/Qualifiers FH FT source 1..7334 FT /organism="Arabis mosaic virus" FT /segment="RNA1" FT /host="grapevine 'Pinot gris'" FT /isolate="Neustadt an der Weinstrasse (NW)" FT /mol_type="genomic RNA" FT /db_xref="taxon:12271" FT CDS 228..7082 FT /codon_start=1 FT /product="polyprotein 1" FT /db_xref="GOA:Q6W8W5" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/Swiss-Prot:Q6W8W5" FT /protein_id="AAQ73821.1" FT /translation="MWQISEGSQCCCTGKTWSNAEAKEARYVCNCILSCRLVKVEVVPQ FT LPKSRIAPAQDKAERITPLCNSNGGAAPTIPKSKRAFEPRTPLIKQRCDVVVRVGPPAD FT LDLVYPALVQEEVAIPPTEKVLQPTLKAEVRVPIFCAPKRMVAFPKPPTKIASKRDALQ FT FPAGAVAFNGINFIDAKGKVVLSEGAKRILKGIRVAKQQRQRTARRSAACKKVRKARDL FT ALFKRLSEECTFQDLPGGFAGEIPAGHACYRKVAAPTTSFKKEVSKGKKAKKPSTPVLP FT AQDFSCVDSFDWGEKSSPVEIEDDWVLIEKPVLQRQAAHSAQGRATEALTRFAASGGFT FT VKAHQKVEELASSGEAGHLIAGEFAELCLRSLVYNDAPVLSASIEELITEQDFKDAIEL FT FNIELAELPTDSTTCGQFNDWASAAKKMAKGVGSIVGDFARMSGAGVLITFDRCIEYLQ FT KKALTFCQKVFNATMAPYLSHLAEASNIISKIWKKLAEWMESLKGKAGLALEVLAQHAI FT FALGAIVVGGVVVLVEKVLVACKVIPNCGIVLGAFLTLFFASLGLTALECTAEEIFRMH FT QCCKGAIYSMYSVKEPMNEAEGSSVTMGVLQGLDNAISALTRVGQSMISFKLGSFSYYA FT KIAQGFDQLARGKKAIGELTGWLIDLVGGVYSKVSGQESTFFDELSTIVCLDVRSWLLK FT SKRVRLQVETMAIGDRITLDTISKPTGMQGHKILITAAGVPRKTSADFTMCIKEEVSKL FT EEVHQRTACAGINEGMRQFPFWVYIFGASQSGKTTIANSVIIPSLLEEMNLPKTSVYSR FT PKTGGFWSGYARQACVKVDDFYAIEQTPSLASSMIDVVNSEPYPLDMAYLHEKGMSMDS FT PLVVTTANTVKPPTNAGITDEASFFNRRAAVIEVRRKDNTHFTPRAYDNCIEVRFLHNK FT CAYVDSEGIPQGPAVNTPMEEGWISPSEAVATLKNLLGEHVLAEEEKLLDYRERIGNDH FT PIYNAAQEFIGNMHYPGQWLTTEQKNTYGINEEGFSFLAVDGKMYKYNVLGKLNPCETV FT PPHPNVIPWLEEKTLSIVHWDAHKHIATGPRNALVSCFLQGLVQDQSRVQSVDLMGKDS FT SPEQQAFFKRLTLSERIYLRLCQIRIDAVKKEQLSSVSRGALDVLRDCMYKSKAKLVEN FT YSLLLTLVAILVLIATAYSLISTLIGLAGCSSFAGGMVALNHVSNASIPCSEPRLEEGY FT IPRNKFVSRISRTRGDGPAQGQGDHEELVTELYYYFDGVKRLISCCWFKGRSLLLTRHQ FT AMAIPIGNEIQVIYADGTERKLVWPGRQEDRSCKGYIEFPDNELVVFEHARLLTMPIKY FT EKFFVDDPDHQISPNVAVKCCVARLEDGIPQFHFWNKYASARSDVHTIKDEGGSAVYQN FT KIRRYIIYAHEAKRNDCGAIAVAEIQRTPKVLAMLVSGIGNVTYSSVIPSYSSSFVRGD FT VPYVPEDGIKTNGYRKVGYLMAKDAPHVPSKTAFMKVPDEICFPYPNPKQPAILSAEDE FT RLIGTVHEGYTPIREGMKKFAEPMHLLDAQLLDEVAGDMVHTWFDAGEILEDVPLSIAI FT NGDVEEEYFDPIAMDTSEGYPEVLQRKNGEKGKARFFVGEPGAREFVPGCGPERAYLSL FT EEECKTRIPSLVSIETPKDERLKRSKIETPGTRLFSVLPLAYNLLLRVKFLSFSRLLMK FT KRSHLPCQVGINPYSREWTDLYHRLAEKSDVGYNCDYKGFDGLITEQILAVVATMINAG FT FRNPVSNQQRSNLLMAISGRLSICGSQVYETEAGIPSGCALTVVINSIFNELLMRYCYK FT KIVPPIYRECFDRCVVLITYGDDNVFTVSQSIMTSFTGDALKAEMANLGVTITDGKDKS FT LATIPARPLLELEFLKRGFKKGNGGLIYAPLEKLSIMSSLVYIRSDGSDMLQKLVDNVN FT TALVELYLHQDREYSESVRDFYLEKLPPGSYKELTTWYEAQIFHECQLSGESGWKPQGL FT IEVSHGASFASFVQQNGTELERHDICPGLAISGSKYIAREEEILMSLSSLLPGDINAVK FT LTLKCGDGIGRLPSKASVLSQRKPGIVMQLCARAIKEKKTLVIRDERPYIGGWAMACIC FT GESFGFSIKDTLALYANLMGPNRKNGLATYFTDFDSPVHVKKIHAITNGEEGVAMLKDS FT FAFCEPTTIAATSCDTRKEMVSHLPTSFPNIVLIGGISYPKEGGEPGALYSPTDVVMSK FT KLQGVYVSEAVLKCCLRCPGAAVKTVLQTSSPGSSLSQAHFRSLRRVQSHRCMRKS" XX SQ Sequence 7334 BP; 1997 A; 1447 C; 1770 G; 2120 T; 0 other; atgaaaattt ttgtggagtt tttatataaa cgcattccac aatatttcag atcaagagtt 60 taagaaactc aaaattgtta caatcaatcc gttaagagcg gaatcaaaat caaaccgtta 120 agagcggtat caagtgaaga gtttaagaaa ctcattgtcc tactctgcaa tttatttacg 180 ccgtatttgt ttagttaata ttttgttgtt ttagggcttc tgccactatg tggcaaattt 240 ctgagggttc ccagtgctgc tgcactggga aaacctggtc caatgccgag gctaaggaag 300 cccggtatgt ctgcaactgt attctcagtt gcaggcttgt taaggttgag gtagtacctc 360 aacttccgaa gagcaggata gcgcctgctc aagacaaagc agagaggata acacctcttt 420 gcaattcaaa tggtggggca gcgcccacca tcccgaaatc caaaagggcc tttgagcccc 480 gcacaccttt gatcaagcaa aggtgtgatg ttgtcgtcag ggttggccca ccggctgatc 540 ttgacttggt ataccctgct cttgtgcagg aagaggtggc aatcccacct actgaaaagg 600 ttctgcagcc taccttaaag gctgaagtga gggtgcccat tttttgtgca cccaaacgga 660 tggtggcttt tcccaagcca cctactaaaa ttgcatccaa gagggatgct ctacagttcc 720 ctgctggggc tgtagctttt aatggcatca attttatcga tgccaaggga aaagtcgtcc 780 tatctgaggg cgcaaagagg attctcaagg gaatccgcgt tgctaaacag caacgtcaaa 840 gaaccgcgcg cagatctgct gcgtgcaaaa aggttcgtaa agccagagat ctggctttat 900 tcaagcgctt gtctgaagag tgcaccttcc aggatctgcc tgggggtttt gccggtgaaa 960 ttccggccgg tcatgcctgc taccgaaagg tagcagctcc cactacctcc tttaaaaagg 1020 aggtttccaa aggaaagaag gctaaaaaac cttctacgcc agtgctgcca gcacaggatt 1080 tttcctgtgt tgacagtttt gactgggggg agaagtcctc tccagttgaa attgaggacg 1140 actgggtcct catagaaaaa cctgtcctac aaaggcaggc tgcgcactct gcgcagggga 1200 gggcaactga agccctcact agatttgccg cctcaggcgg ctttactgtt aaagcccacc 1260 aaaaggtgga ggagctagcc tcatctggag aggctggaca cttgatagcg ggagagtttg 1320 cagagctctg cctgagatct ttggtgtata atgatgcacc cgtcctttct gcctctattg 1380 aagagcttat tactgaacaa gattttaaag atgccataga gctcttcaat atagagttag 1440 ctgagttgcc aactgattcc actacatgtg ggcaatttaa tgattgggct tctgcagcca 1500 aaaagatggc taaaggagta ggatccatag ttggtgattt cgctcgcatg tcgggggccg 1560 gtgtgcttat tacttttgat aggtgcatcg aatacttaca gaaaaaagct ttgacatttt 1620 gtcaaaaagt gttcaatgct accatggccc cctatctgag ccacttagct gaggcttcca 1680 atataattag caaaatttgg aaaaagctgg ctgagtggat ggaaagtttg aagggcaagg 1740 ctggattggc tttggaagtg cttgcacaac atgctatctt tgcccttgga gccatagtcg 1800 tgggaggagt tgtcgtcctc gttgaaaaag tactagtagc ctgcaaagtt attcccaatt 1860 gtgggattgt gctaggtgct tttttaactc ttttctttgc cagcttaggg ttgacggctc 1920 ttgaatgcac agctgaagaa attttccgaa tgcaccagtg ttgcaagggt gctatataca 1980 gcatgtactc agtaaaagag cccatgaatg aagccgaagg aagttccgta accatgggag 2040 tattgcaggg gcttgacaat gcaatatctg ctctcacgag agtcggtcag agcatgatta 2100 gcttcaaact tgggagcttt tcgtactatg ccaagattgc tcagggattt gaccaacttg 2160 ctcgaggaaa gaaagctata ggtgaactca ctggttggct catcgatctg gtaggaggtg 2220 tttattccaa ggtctctgga caggagagca ctttcttcga tgaactgtca actatagtat 2280 gccttgatgt tagatcatgg ctgttaaaga gcaagcgcgt gagattgcaa gttgagacta 2340 tggccattgg tgatagaatc actcttgata ctatttccaa acctacagga atgcaaggcc 2400 ataaaattct cattactgca gccggtgtgc cgaggaagac ttctgctgat ttcacaatgt 2460 gtatcaaaga ggaagtttct aagttagagg aagtacatca gcgcactgct tgcgctggta 2520 ttaatgaagg aatgcgccag tttcctttct gggtatacat ctttggtgct tcacaatctg 2580 ggaagactac tatcgccaat tctgttatca tcccttcact tttagaggag atgaaccttc 2640 ccaagacttc agtgtattcc aggcctaaaa caggaggttt ctggagtggt tatgcaagac 2700 aggcgtgtgt taaagttgac gatttttatg ccattgagca aacgccgagt cttgcttctt 2760 ctatgataga tgtggtgaat tctgaaccat atcctctaga catggcctat ttacatgaaa 2820 aaggcatgtc tatggattca ccacttgttg tgacgactgc aaacactgtc aagcctccta 2880 ctaatgctgg tattactgat gaggcttctt tttttaatcg ccgcgcagct gttatagaag 2940 tgcgcagaaa agataacact catttcacgc cccgtgcata tgataattgc atcgaagtga 3000 ggtttttgca caacaagtgt gcatatgttg attctgaggg catccctcaa ggtcctgctg 3060 taaacacgcc catggaagaa gggtggattt ctcctagtga ggcagttgcc acactcaaaa 3120 atcttctagg agaacacgtc cttgctgaag aagaaaaatt gttggattat cgtgaaagaa 3180 ttggcaacga tcatcctatc tacaatgcag cacaagaatt cataggtaac atgcattatc 3240 ctggacagtg gttaaccact gaacagaaaa atacctatgg aatcaatgag gaaggattct 3300 cttttcttgc ggtcgatgga aaaatgtaca agtacaatgt gcttggtaaa ctgaatcctt 3360 gtgaaacagt accaccacat cccaatgtaa tcccatggtt ggaagaaaag acattatcaa 3420 ttgtgcattg ggatgcgcat aaacacatag ctactggtcc tcgaaatgct ttagtttctt 3480 gctttttgca aggtcttgtg caggatcaga gtcgtgtcca aagtgttgat ctgatgggca 3540 aagatagttc acctgaacag caagcttttt tcaaacggtt gaccctgtct gagagaatct 3600 atctcagatt gtgtcaaatt cgcattgatg ctgtaaagaa agaacaattg agtagcgtat 3660 ctagaggagc tctagacgtg ctgcgagatt gcatgtataa aagtaaggcc aaacttgtgg 3720 agaattattc tttattgttg actttggtcg caattttggt cttaattgct actgcctatt 3780 ctttgatttc cactttgatc gggctagctg ggtgctcgag tttcgctgga ggaatggttg 3840 ctttaaatca tgtttctaat gcttccattc catgttcaga accccggctt gaggaaggtt 3900 acattcctag aaataagttt gtgtcgcgta tttctaggac gagaggagac ggtcctgcac 3960 aaggccaagg agatcatgaa gaattggtca ctgaactcta ttactatttt gatggagtta 4020 agagacttat ttcttgttgt tggtttaagg gacgttccct cttattgaca agacaccaag 4080 caatggccat tcctatagga aatgaaattc aagtcatcta tgctgatggc actgaaagaa 4140 agcttgtttg gccaggtagg caagaagacc gctcatgcaa gggatatatt gaatttcctg 4200 ataatgagct tgttgtattt gagcatgcta ggcttttaac catgcctatc aaatatgaga 4260 agttttttgt ggatgatcct gatcatcaga tttctcccaa cgtcgccgtc aagtgttgtg 4320 tcgcgcggct tgaggatgga atcccccaat tccatttttg gaataagtac gcttctgcga 4380 gaagtgatgt acacactatc aaggatgaag ggggaagtgc agtatatcag aataaaatca 4440 ggagatacat aatatatgcc catgaggcta aaaggaatga ttgtggggcc atcgctgttg 4500 ccgaaataca gcgtactcct aaagttcttg ccatgcttgt ttctgggatt ggcaacgtga 4560 cctattcttc tgtgattcca agctatagct cctcatttgt gaggggtgac gtgccttatg 4620 taccagaaga tgggatcaag acaaatggat ataggaaagt tgggtatctt atggcaaaag 4680 atgctccgca tgttccaagc aaaacggcat tcatgaaagt gccggatgaa atttgctttc 4740 cttatcctaa tccaaaacag cctgccattc tgagcgcaga agatgaacgg ttaataggaa 4800 ctgttcatga aggatatacc cccatccgcg aaggcatgaa aaaatttgct gaaccaatgc 4860 acttgcttga tgcacaactg cttgatgaag ttgcaggcga catggttcat acatggtttg 4920 atgctgggga aattttggaa gatgtgcctc tgagcattgc cattaatggt gatgtggaag 4980 aggaatattt tgatcctatt gccatggata cttctgaagg gtatcctgaa gttttacaga 5040 gaaagaatgg agagaaaggt aaagctcgat tcttcgttgg agagccaggg gcaagagaat 5100 ttgtacctgg gtgtggacca gaaagagctt atctgagcct tgaagaagag tgcaagacgc 5160 gcatcccttc tttggtcagt attgagactc ctaaagatga gagattgaag cgatctaaaa 5220 ttgaaactcc aggaactagg ctgttctccg ttttaccctt ggcatacaat ttgctcctac 5280 gagtaaaatt tttgtctttt tcccgcttac tgatgaagaa aaggagtcat ttaccctgcc 5340 aagtaggtat caatccttat agtcgcgagt ggactgattt gtatcaccgg ttagcggaaa 5400 aatcggatgt gggatacaat tgtgactata aaggatttga tggcctaatt acagagcaaa 5460 ttttagccgt tgttgcaaca atgataaatg caggatttcg taatcctgtg agtaatcagc 5520 agcggtctaa tcttttgatg gccattagtg gtcggctctc aatttgtggc agccaggttt 5580 atgaaaccga agcgggtatt ccttcaggat gtgcattgac agttgtcata aactctatat 5640 tcaatgagtt gttaatgcgc tattgttata agaaaattgt gcccccaatt tatcgagagt 5700 gttttgatag atgtgtcgtt ctgatcacct acggtgacga taatgtgttt acagtgtcac 5760 aatctatcat gacgagcttc actggcgatg ctctcaaagc tgagatggcc aatctgggag 5820 taacaattac tgatggtaag gacaaaagtc ttgccacaat tccagctcgc ccacttctgg 5880 aattggaatt cttgaaacgt gggttcaaga aaggaaacgg aggcttgata tatgcgcccc 5940 tagagaagct gtccatcatg agctcacttg tgtatattcg tagtgatggt tcagatatgt 6000 tgcagaaact cgttgataat gttaacacag ctcttgttga gttatatctg catcaagata 6060 gggagtattc agaaagcgtc cgagatttct atctggaaaa acttcccccc ggatcttata 6120 aagaattgac aacatggtat gaagcacaga tcttccatga atgccaactc agtggggaaa 6180 gtgggtggaa gccccaggga ttgatagaag ttagtcatgg tgccagtttt gctagttttg 6240 tgcaacagaa tgggactgaa ctggaacgcc atgacatttg tcctgggctg gctatatctg 6300 gatctaaata tatagccagg gaggaagaga tactgatgtc tcttagctct cttttgccgg 6360 gtgatatcaa tgctgtgaag ctcactctta aatgtgggga tggtattggc cgtctccctt 6420 caaaagctag tgtgttgagc caaagaaagc ccggaattgt tatgcaattg tgcgcgagag 6480 caatcaaaga aaagaaaact ctcgtcattc gtgatgaaag gccctatatt ggaggatggg 6540 ccatggcttg tatttgtggg gaaagttttg gtttttccat taaggatacc ctagcacttt 6600 atgccaatct catgggacct aataggaaga atggacttgc tacttatttc acggatttcg 6660 acagtcctgt tcatgtgaag aaaattcatg ccattactaa tggagaagaa ggagtagcta 6720 tgctaaaaga ttcttttgct ttctgtgaac ccaccaccat tgcggccact tcatgcgata 6780 cgagaaagga aatggtttct cacctaccca catcatttcc aaatattgtt ctgattggtg 6840 ggattagtta ccccaaggag gggggggaac ctggcgcgct gtactctccc actgatgtag 6900 ttatgtccaa aaagttgcag ggcgtatacg tcagtgaagc tgttctaaag tgttgtttga 6960 gatgccctgg tgctgctgtt aaaacagtcc ttcagacttc ctctcctggg agtagtttgt 7020 ctcaagctca ttttaggagt ttacgccgag tacaatcaca tcggtgcatg cgtaaatcat 7080 aaatcgcgct tccttcaagc atggtactgg gataaccatc gttaaataac ccagttttag 7140 cactgctcat actctgttgg gtgcttcata ttttagagta ttttgtatta tatttatact 7200 tagcttgttt actgcttttg tgtgtttatt ttcatgcatt tagtggcgac agtgtgttgt 7260 ttgtcctttg gacacacttg ccttgttgga cacaaaaaga ttttatcctt ctttttactg 7320 cttttataga tttt 7334 //