ID AY216517; SV 2; linear; genomic RNA; STD; VRL; 7046 BP. XX AC AY216517; XX DT 05-JAN-2004 (Rel. 78, Created) DT 10-JAN-2008 (Rel. 94, Last updated, Version 2) XX DE Amapari virus strain BeAn 70563 segment L, complete sequence. XX KW . XX OS Mammarenavirus amapariense OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Arenaviridae; Mammarenavirus. XX RN [1] RP 1-7046 RX DOI; 10.1016/j.virol.2003.08.016. RX PUBMED; 14698659. RA Charrel R.N., Lemasson J.J., Garbutt M., Khelifa R., De Micco P., RA Feldmann H., de Lamballerie X.; RT "New insights into the evolutionary relationships between arenaviruses RT provided by comparative analysis of small and large segment sequences"; RL Virology 317(2):191-196(2003). XX RN [2] RP 1-7046 RA Emonet S., de Lamballerie X., de Micco P., Charrel R.N.; RT "Complete sequence determination and analysis of the large RNA segment of RT arenaviruses"; RL Unpublished. XX RN [3] RP 1-7046 RA Charrel R.N., Lemasson J.-J., Garbutt M., Khelifa R., De Micco P., RA Feldmann H., de Lamballerie X.; RT ; RL Submitted (09-JAN-2003) to the INSDC. RL Unite des Virus Emergents (EA3292, IFR48, IRD UR034), Universite de la RL Mediterranee, Faculte de Medecine, 27 Blvd Jean Moulin, Marseille 13005, RL France XX RN [4] RC Sequence update by submitter RP 1-7046 RA Emonet S., de Lamballerie X., de Micco P., Charrel R.N.; RT ; RL Submitted (10-MAY-2004) to the INSDC. RL Unite des Virus Emergents (EA3292, IFR48, IRD UR034), Universite de la RL Mediterranee, Faculte de Medecine, 27 Blvd Jean Moulin, Marseille 13005, RL France XX DR MD5; e0caa546b73031dbd5d169d328144fcc. XX CC On Jan 9, 2008 this sequence version replaced gi:37787727. XX FH Key Location/Qualifiers FH FT source 1..7046 FT /organism="Mammarenavirus amapariense" FT /segment="L" FT /strain="BeAn 70563" FT /mol_type="genomic RNA" FT /country="Brazil" FT /db_xref="taxon:3052296" FT CDS 31..6612 FT /codon_start=1 FT /product="L protein" FT /note="polymerase" FT /db_xref="GOA:Q6XQH4" FT /db_xref="InterPro:IPR007099" FT /db_xref="InterPro:IPR010453" FT /db_xref="InterPro:IPR026382" FT /db_xref="UniProtKB/TrEMBL:Q6XQH4" FT /protein_id="AAP44553.2" FT /translation="MDEKINSLKDFVRKQVPEIPELSYQRELLLSQVEMGMILMEGFKL FT LSCLVEIESCKKNSCEHNSSQKFVDVILSDNGVVTPTLPKVIPDGFRFFNKTLILLETF FT VRVNPEEFEKKWKRDMSKLLTLKEDVQKAGITLVPIVDGRCNYNTNLMPDWATERFRWL FT LIDLLRESRGDSKIDIEEQEYQRLVHSLSKTGNQSLGFENIECLKRHCLNYESRLDESL FT LTGFNNDLRESKIREGLIKMKNWYRKEVFVKGMGNFVKTDKAKLLQSLESLGLHANSGT FT SECPFCCCKILDICYKLMQKLKHGHSLSEGIPDEFIAKSQIEKEYLLVLSVCNKIKGKK FT VFNTRRNTLLFLDLIMLNFVIDVFENNPTELCFLKESGLIIGQMLLFSNDRVLDILSAR FT KLLKKKLEISAHWVKKCNSILKRAEPDLWDYVSKYITEPKFDSLTSLAEELCTERPVMR FT YKVQIHSGDGCSHKEFETLSEQQQICLFKCLSHVSLSLTNSMKTSFSSRLLVNEVDHKK FT YFGTVRLKECYVQKFFLTNELYGLLFYQKTGERSRCYSLYLSDKGQLKEVGSFYCDPKR FT FFLPIFSDTVLLLMCAEMVSWLDFCEELAREVDPLLRLLVLSILCSPSKRNQTFLQGLR FT YFIMAFVNQAHHVQLMSKLVVECKSASDVLIQRLSVRMFRMVLDFGSDPDAFMSRKFKF FT LLNVSYLCHLVTKETPDRLTDQIKCFEKFLEPKLEFGFFVVNPSLNGTLTKEQEDAMVG FT GVSKFFSKDIFNIEDMKQPGVSRDLLSYCLTLFNKGKLKVNGSLKVNPFRPSFTSTALD FT LSSNKSVVIPKLDELGNIVSVYDKQKLVSTCVASLVERFKTKGKFNLDPNEIEFLIMDN FT LTNLLAIKGSAVKEREELSMLYEQLSDDAIKAFEELRQDVEFTLGRMRTPEKKKKTTNF FT YGNCTLESLWAPFNVMKAIRTETSIHEIRDFDPNILPPEIYEELCTSVFESSLKESFFL FT NEVLDICPLELLLKNLTTRCFEEQEFFDCFKYLLIHAGFDQRLGTYEHKSKSRLGLSED FT VFKLRDDVRMSQRESNSEAIARRLDKSFFTSAALRNLCFYSEESPTEYTCISPNTGNLK FT FGLSYKEQVGSNRELYVGDLNTKMMTRLVEDFAEAVAKSMNYTCLNSEKEFEKAICDMK FT MAVNAGDICCSLDHSKWGPFMSPALFLSFINELKLKDHETSALIDCRPVLSVLRWHLHK FT AVEVPFNVAEAYCTGMLKRRLGLMSLQSQSVSEEFFHQQLLMGKEVPSHIMSVLDMGQG FT ILHNLSDLYGLITEQFLNYCLDLLFDVVPISYTSSDDQITMIKFPTTNAPEGGESQSDW FT LEVLCFHDFLSSKLNKFVSPKSVCGSFAAEFKSRFFVMGEETPLLTKFVSAALHNVKCK FT TPTQLAETIDTICDQCVANGVGVTIVGEISKRVNRLIKYSGYPQTPFLAVEVQDVKDWV FT DGSRGYRLQRNVENCLSDHPQLELIRKSAKKVLTKIKRGLIFEEHLVQLIGKGGDNAME FT AFLSYIDCSEIEKREALRYRWLNLSSNGDLRLVLRTKLMSARRVLEKEQIPTLIKTLQS FT KLSKNFSRGAKKILAESINKSAFQSSVASGFIGFCKSMGSKCVRDGSGGFLYIKDVISK FT VKICSCDICSLAPGIVFCDEALENVSMFSRPILWDYFSLVLTNACELGEWVFSCVQIPP FT KPTLLSNPNLFWAVKPRGVRLVEDQLGLNHVLQSVKRNYPKIFEEHLVPFMSDLQVSRT FT TDFTKLKYLDVCIALDMMNENLGIISHLLKGRDNSLYIVKQNECASAHVRQVEYVDYDV FT GLSPQQICSNFKIQLTFSSFINPLVMTTSTLRSFFWFGEVLRLEDENQIDVGELTDFVL FT LIKKYNVDRAMMLDDLTMGFVVSEIGEPKFRLLDFEWSGVEEQTSFPLSENSNNNEIKF FT TLNLQLEHKRLSTKYRLTRLVVYSYTMVCVMLVNDSRGVLKVENLTLRASGDVKEHRFL FT DGVTLVSHHPTLCGKRGINILDLFRDAELPIPETRMFPEEVFLDLSDYQSEVEDKYAYE FT IVGPEFSDVPLVMSGGCLVVGDKKLSHLLTELTGNVILKALGALETDGEIGSFLMGLWP FT YIKATKQRVKISQEEFLFIYETHRRSLLMSFEAYNDWLEFLDFSVCFSKTLGDLVVSDS FT SGNMRLRGVVCRPLRQVGTVMEIE" FT CDS complement(6703..6990) FT /codon_start=1 FT /product="Z protein" FT /db_xref="GOA:B0BLK8" FT /db_xref="InterPro:IPR003224" FT /db_xref="InterPro:IPR024183" FT /db_xref="InterPro:IPR038485" FT /db_xref="UniProtKB/TrEMBL:B0BLK8" FT /protein_id="ABY59841.1" FT /translation="MGNCNVKQETQPQSTRPKTTSTETELLRTPPVSLHGRYNCKCCWF FT ADKNLVVCSDHYLCLRCLNLMLRTSDLCNICWKPLPTRIAIPVEPSAPPE" XX SQ Sequence 7046 BP; 2123 A; 1113 C; 1626 G; 2184 T; 0 other; cgcaccgagg atcctaggcg aaatttgact atggatgaaa agatcaattc tttgaaagac 60 tttgtgagaa agcaggttcc tgaaatacct gaactttcct atcaaagaga acttttgtta 120 tctcaggtgg agatgggcat gattttaatg gaaggcttta agttactttc ctgtttagtt 180 gagatagagt cctgtaagaa gaattcctgt gagcacaact caagtcagaa gtttgttgat 240 gtaatcctat ctgacaacgg agtggttact ccaactttgc ctaaggtaat tcctgatggc 300 tttagatttt ttaataaaac attgattctt cttgaaacct ttgttagagt taaccctgaa 360 gagtttgaaa agaaatggaa gcgtgatatg tcaaaattgt taacattaaa agaagatgtt 420 cagaaagcag ggatcacttt agtgccaatt gtggatggaa gatgcaatta caacaccaat 480 ctgatgccag attgggcaac agaaagattt aggtggttgc ttattgactt gttgagggaa 540 tcaaggggtg attcaaagat tgacatcgag gaacaggaat accagaggtt ggttcacagt 600 ttgtccaaaa ctgggaatca gagtttagga tttgaaaata ttgagtgtct caagagacat 660 tgtctcaatt atgaaagtag actggatgag agtttattga caggtttcaa taatgatctt 720 cgagaatcta aaatcagaga aggtttaata aaaatgaaga attggtatag aaaggaggtt 780 tttgttaagg ggatgggtaa ttttgtcaaa actgacaagg caaagctatt gcaaagcttg 840 gaaagtctgg gtttgcatgc taattctggg acttcagaat gtcctttttg ctgttgtaaa 900 atacttgata tttgttacaa attgatgcaa aaattaaagc atggtcattc tttatctgaa 960 ggaattcctg atgagttcat tgcaaaatca cagattgaaa aggaatatct tttggttcta 1020 tcagtgtgca ataaaataaa aggaaaaaaa gtctttaata ctagaagaaa cactctgttg 1080 ttcttagatt taattatgct caattttgtt attgatgttt tcgaaaataa tcctactgag 1140 ttgtgtttct tgaaggaatc aggactcatc atcggacaaa tgttgctgtt ttcaaatgac 1200 agagtgttgg atatcttatc tgccaggaag cttttaaaga agaaattgga aattagtgcc 1260 cactgggtga agaaatgtaa ctcaatttta aaaagggcgg aaccagacct ttgggattat 1320 gtttcaaaat atatcacaga acctaagttt gatagcctta cctcactagc tgaagaatta 1380 tgtactgaga ggccggtcat gaggtacaag gtgcaaattc actcaggaga tgggtgctca 1440 cacaaggaat ttgaaacctt atcagagcaa cagcagattt gtctttttaa atgtctttct 1500 catgtgtctt tgtcattaac caattccatg aaaacctcat tttcatccag attgttagtg 1560 aatgaggtgg accacaaaaa atatttcggc actgttagat tgaaagaatg ttatgttcaa 1620 aagttctttt taaccaatga gttgtacgga cttttgtttt atcaaaaaac aggtgaaaga 1680 tcaaggtgct actcattgta cttgtcagat aaagggcaac tcaaagaggt tggttccttt 1740 tactgtgacc caaagcgatt cttcctcccc atcttttctg atacagtact cttgttaatg 1800 tgtgcagaaa tggtgagctg gctagatttt tgtgaggaat tagctagaga agtggaccct 1860 cttttaagac tactggtgct tagcattctt tgctcccctt ctaaaaggaa tcaaactttc 1920 ctacaaggac taaggtactt cattatggcc tttgtaaacc aagctcacca tgttcaattg 1980 atgtctaaac tagtagtaga atgtaaatct gcatcagatg tattaataca gaggctaagc 2040 gtgaggatgt tccgaatggt tttagatttt ggttcggatc ctgatgcgtt tatgtcaaga 2100 aagtttaaat tcctactcaa tgtaagctac ctttgtcatc tagtgacaaa ggaaactcct 2160 gataggttaa ctgatcagat aaaatgtttc gaaaagtttt tggaacccaa attagaattc 2220 ggtttctttg ttgtgaatcc ctctctcaat ggcacattga cgaaggaaca agaagatgcc 2280 atggtgggtg gcgttagcaa attcttttct aaggacatct tcaatataga agatatgaaa 2340 cagccagggg tttctagaga cttgctgagt tattgtttga cactgtttaa caaaggtaag 2400 ctaaaagtta acggtagttt gaaggtgaat ccatttagac caagttttac aagcacagca 2460 ttagacttgt ccagtaataa aagtgttgtg ataccaaagc tagatgagct tggaaacatt 2520 gtttctgttt atgacaagca aaagctggtt tcaacttgtg tggcatcatt agttgagaga 2580 tttaaaacaa aaggcaaatt caatctggac ccgaatgaga ttgagttttt aatcatggat 2640 aatctgacaa atttgctggc tattaagggt tctgctgtga aagagagaga agagttgtct 2700 atgttatatg agcagctatc cgacgatgcc ataaaggctt ttgaagagtt aagacaagat 2760 gtagaattta ctcttgggag aatgagaact ccagaaaaaa agaagaagac aacaaacttt 2820 tatggcaatt gtacattgga gtccctttgg gctcccttta atgtcatgaa ggcgattaga 2880 actgagacta gcattcatga aatcagagac tttgatccca atattttgcc acctgaaatt 2940 tatgaagaat tatgcacatc tgtttttgaa tcgtcactaa aggaatcttt ctttctaaat 3000 gaggttcttg atatttgccc actcgaactt ttattgaaga acttgacaac aagatgtttc 3060 gaagaacagg agtttttcga ttgctttaag tatttattaa ttcatgctgg gtttgatcag 3120 agattaggta catatgagca caagagtaag tctaggttag ggttatctga agatgtgttt 3180 aagctgagag atgatgttag aatgagtcaa agggagagta actctgaagc catcgcaagg 3240 aggcttgata aaagcttctt caccagtgca gctttaagga atctatgctt ctattcagaa 3300 gaatccccta cagaatacac ttgtattagt ccgaacactg gcaatttgaa gtttggttta 3360 agttataagg aacaagttgg ttctaatagg gagctttatg taggtgacct taatacaaaa 3420 atgatgacaa gacttgtaga ggattttgct gaagctgttg ctaagtccat gaactacacc 3480 tgtttaaact ctgagaaaga attcgagaag gccatctgtg acatgaagat ggctgttaat 3540 gctggggaca tttgctgctc actagatcac tcaaagtggg ggcccttcat gagcccagcc 3600 ctctttcttt ctttcattaa tgaattaaaa ttgaaggatc atgaaacaag tgctctgatt 3660 gattgcagac cagttctaag tgttttgagg tggcatttgc acaaagctgt tgaggtgcca 3720 ttcaatgtgg cagaggcgta ttgcaccggg atgctgaaga ggagattagg tttgatgagc 3780 ctacaatctc aatcagtgtc tgaggaattt ttccatcaac agttattaat ggggaaggaa 3840 gtgccaagtc atattatgtc tgtgttagac atggggcagg gaatacttca caacctctct 3900 gatctttatg gactgatcac agaacagttt ttgaattatt gtttagattt gctttttgat 3960 gtggtgccca tttcttacac atcaagtgat gatcaaataa caatgataaa attcccaact 4020 acaaatgcac ctgagggggg ggagagtcaa tctgattggt tagaagttct ttgttttcat 4080 gacttcttgt cctccaagct aaacaaattt gtaagtccca agagtgtttg tgggagtttt 4140 gctgcagagt ttaagtcaag gttttttgtt atgggtgaag aaaccccctt actcacaaaa 4200 tttgtctcag cagcactcca caatgttaag tgcaaaacac ctactcagct tgccgagaca 4260 attgatacaa tttgtgatca gtgtgttgct aatggtgtag gggtcaccat tgttggtgag 4320 atatcaaaga gggttaatag gttaataaaa tactctggtt atccacagac tcccttttta 4380 gctgtggaag tccaggatgt gaaagattgg gtggatggtt caagaggtta tagattgcaa 4440 cgaaatgtgg agaactgtct atctgatcat cctcagttag agcttataag gaaaagtgcc 4500 aaaaaggttt taacaaagat caaaaggggg ctcatatttg aagagcattt agttcagctg 4560 ataggaaaag gtggtgacaa tgcaatggaa gctttcctct cttacataga ctgttcggaa 4620 atagaaaaaa gggaggcttt gcgttatcgt tggttgaatc tgtcttccaa tggagatcta 4680 agacttgtct taagaaccaa gttaatgtca gcaagaaggg tactggaaaa agaacaaata 4740 ccaactttaa ttaagacatt acaatcaaag ctttcaaaga atttctcaag aggtgcaaaa 4800 aagatattag ctgaatctat aaacaagtca gcctttcaat cgtctgtagc ttctgggttc 4860 ataggctttt gtaagagtat ggggagcaag tgtgtcagag atgggagtgg tgggttttta 4920 tacatcaaag atgtgatcag taaggtgaaa atttgttcat gtgacatatg ttctttggct 4980 ccaggcattg ttttctgtga tgaagcacta gagaatgtct caatgttctc aagaccaata 5040 ctttgggatt atttttcttt ggttttgacg aatgcttgtg aacttggtga gtgggtcttt 5100 tcttgtgttc aaataccacc taaaccaact ctattaagca atcccaatct tttttgggca 5160 gtgaagccaa gaggtgtgcg tctggttgaa gatcagttag gattaaacca tgttctacaa 5220 tctgtaaaga gaaattaccc taaaatattt gaggagcatt tggtaccgtt catgagtgat 5280 ttgcaggtga gtcgaactac tgatttcaca aaattaaaat acctagatgt ttgcatagct 5340 cttgatatga tgaacgagaa tcttggtata atttctcatt tattgaaagg gagagacaat 5400 tcattgtaca tagtgaaaca aaatgagtgt gcatctgcgc atgtaaggca agttgaatat 5460 gttgactatg atgtaggttt gagtcctcaa cagatctgtt caaattttaa aattcagttg 5520 accttttctt cttttatcaa cccacttgtg atgacaactt caacattaag atcctttttt 5580 tggtttgggg aggttcttag gttggaagat gagaaccaaa tagatgttgg tgagttgaca 5640 gactttgttt tattgattaa gaagtacaat gtggatagag cgatgatgtt agatgatcta 5700 acaatggggt ttgttgtctc agaaattggt gagccaaaat tccgtttgtt agattttgaa 5760 tggtctggtg tcgaggaaca aacttctttt ccactatctg aaaactcaaa caacaacgaa 5820 ataaaattta cattgaattt gcagctggaa cacaaaaggc tttcaacaaa atatcgtctg 5880 actaggcttg ttgtgtattc ctacacaatg gtctgcgtaa tgttagttaa tgattccaga 5940 ggtgttttga aagttgaaaa cttgacgctg agggcctctg gtgatgtgaa agagcatcgg 6000 tttcttgatg gggtaacgct tgtctctcat catccaaccc tatgtgggaa aagggggata 6060 aacattctgg acttatttag ggatgctgag ttgcccatac ctgaaacaag aatgtttcct 6120 gaagaagtgt ttttggatct cagtgattat caatcagaag ttgaagacaa gtatgcatat 6180 gaaatcgtgg gtcccgaatt ttctgatgtg ccattggtta tgagtggagg atgtcttgtt 6240 gtaggggata aaaaactgtc acacctgttg actgagctga caggaaacgt cattttgaag 6300 gcattgggtg ccctggagac agatggagag attggaagtt ttttgatggg attgtggccc 6360 tacataaagg ccacaaaaca aagggtgaaa atatctcaag aagaatttct ttttatatat 6420 gagacacata gacgttcact tcttatgtct tttgaagcat ataatgactg gttagaattt 6480 ttagatttta gtgtgtgttt cagcaagacc ttaggtgatc tggttgtgtc ggacagttct 6540 ggcaatatga ggttaagagg agttgtttgt agacctctgc gtcaagtcgg cacagtgatg 6600 gagatagagt agaccagaca ggatcaacgc cccccggggt tccccggtgg gggccccttg 6660 cggggccccc ggggtttttg ccggtgtggt ttgtctgctg cctcattccg gtggtgcgct 6720 gggctcgact ggaatcgcta tgcgagtggg tagaggtttc cagcagatgt tgcacagatc 6780 agaggttctg agcatcaagt tcaagcatct cagacagaga tagtgatctg agcacaccac 6840 aaggttttta tcagcaaacc aacaacattt gcagttgtat ctaccgtgga ggctgactgg 6900 aggagttctg agaagttctg tctcagttga agttgttttg ggtcttgttg actggggttg 6960 ggtttcttgc ttgacattac aattgcccat gtcggaactg taacagagca ataagcgtga 7020 aagttacgcc taggatcccc ggtgcg 7046 //