ID AY072921; SV 2; linear; genomic RNA; STD; VRL; 7781 BP. XX AC AY072921; AF468004; XX DT 05-FEB-2002 (Rel. 70, Created) DT 13-AUG-2010 (Rel. 105, Last updated, Version 4) XX DE African oil palm ringspot virus, complete genome. XX KW . XX OS African oil palm ringspot virus OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; OC Robigovirus. XX RN [1] RP 1-7781 RA Morales F.J., Lozano I., Velasco A.C., Arroyave J.A.; RT "Detection of a Fovea-like Virus in African Oil Palms Affected by a Lethal RT Ringspot Disease in South America"; RL J. Phytopathol. 150:611-615(2002). XX RN [2] RP 1-7781 RX DOI; 10.1111/j.1439-0434.2009.01598.x. RX AGRICOLA; IND44323029. RA Lozano I., Morales F.J., Martinez A.K., Pena E.A.; RT "Molecular Characterization and Detection of African Oil Palm Ringspot RT Virus"; RL J. Phytopathol. 158(3):167-172(2010). XX RN [3] RP 1-7781 RA Lozano I., Morales F.; RT ; RL Submitted (11-JAN-2002) to the INSDC. RL Virology Unit, International Center of Tropical Agriculture, Cali, Colombia XX RN [4] RC Sequence update by submitter RP 1-7781 RA Lozano I., Morales F.; RT ; RL Submitted (15-JAN-2009) to the INSDC. RL Virology Unit, International Center of Tropical Agriculture, Cali, Colombia XX DR MD5; 77bd4320969b282c6584f4c0b6f56831. DR EuropePMC; PMC6339470; 30671312. XX CC On or before Apr 1, 2009 this sequence version replaced CC gi:19401708, gi:18482489. XX FH Key Location/Qualifiers FH FT source 1..7781 FT /organism="African oil palm ringspot virus" FT /mol_type="genomic RNA" FT /db_xref="taxon:185218" FT 5'UTR 1..75 FT CDS 76..5619 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="replicase" FT /db_xref="GOA:Q8UZK2" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR003323" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008041" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q8UZK2" FT /protein_id="AAL68924.2" FT /translation="MALHYISAPEQVVSLFSSEAQSRISAMALQNFSSFEEEAHAAFNY FT HLEAYPKSRLCKKGVYLSPYSFVSHSHPVCKTLESYIINKKIVNYIDDKYIFVGIKDSK FT LAALRVNKKLRMAEVINRYVSAHDIQRYGADAYFNCAKMAWRGRKVGLPLVDLVPRVLT FT SGKRRIFLYDELHYWTTNDLIDFIDITNPEVIVATFVYPKEILVGCKESLNPWAYKFEI FT FGSTIKFAPDGVWSESYEQPVEAGDILRLNKLVTKHGIYSIQVRDSIFCHSVVIISKGD FT LVTEKRRIFSDFDAIRIGELRPYRGRVDEILPVRHDIVLSIFKYLRTLKKPDLQSAMAK FT HRQICDEPTGFEVRFIEDFSAFLLANNCTHDLIERGFGALLKGAVFNLMPDYMKPFFSS FT LKEMSLSRFIEQVKPFEFYLDCETGRRSFDIPGWCYSVIESSIESTKNILDEKILEVAC FT KIPSPKATSSNPYDFSAYDCVLNIWQDAKPSLSIARAMLERLMAGAVNVCSLSAASNLF FT GDGETEFKRKLKGNLLGFYLSNRKALQPLLIQVLAQIRREAKMIKPLRLLKQESYSDEL FT SRSSPALKKAKCGVQYFKELFQLCTIEILSSVNPAEVSAEGEGLRGTSKPERGAVSVEP FT TCLASPAGNVNETEEIRADTGELPSDVSCSTPLHQEPTTNEPNPDKSSNVSDSSLSANN FT PHSKMGDEWEGKPKPDCHSEDSKERVTEFLLNCSILRTRDCSSIPKVAIFPVPADGDCF FT WHAAGSVLGVDAGKIKERLRELAADIEDSDIKRKVLFQLSEREWAADESIAFFCDTFNV FT QTTAFVCDKDPLVFTSVVTFCPMSGDSDSFQNLMVKFNSVTQHFDLALPKNGCVIRAIA FT EFLNQKPAKVLSVISKECSKELVEDIMSGLGVQPVHLKELFSFFDIAAEVRENGNSRLI FT NAKGSRSATFQISDDHMTFLCSGRSSACGSLSLQPRIVSMGPEADYESFTKEGSGLIQY FT EPSFERASRLAKSLLQGSTGVFSSKLVWKRYDWLQDKSKLQFGKRGISFCVGTFGSGKS FT SSAIRYLKDHLGYKNTVVTPRRFLCNQIKEQLGFKEGKIRRGVQTNVLTFETALAKIAQ FT LKNSRFFIDESQLFPPGYLDLLCLILPRESTIFLMGDPAQSSYDSEADRHIFSDVSNDL FT DVLLDKSNYQYLVYSHRFKNPVFNKRLPCEFHEGSFNLVSEGWTFYSSWEEIKLAISKK FT NFSCDAFLVSAFAEKKLVQFMMGKQTKVYTFGESTGMNLKHACVLLTYDSQQADEKRWL FT VALSRSSEGISFLNLSGRTMQQFADDMSPSVFTKFVSSTAKLEDLRCLLPGKPSFVKKF FT QRIGSDEVDREERLKGDPWLKTKIFLGQRAEVPVEPQESEEPPPVLMKTHCPLGSLGLL FT QASHDGHLKAKERREKRVDFDLVTDQFTEEYSKGFSHAPAPERFEAIYPRHKAGDTATF FT VMAARKRLFFSRPNVEAAKLRAALPYGDMMKDIFLSHVPIKHNWDQRLFEESKADFERK FT KLEKSAATIENHSGRSNPDWSIREALIFMKSQICTKFDNRYRDAKAGQTLACFHHNVLC FT RFAPYIRYIEKKLFQALPNQFYIHSGKNFDDLNDWILNADFSRVCTESDYEAFDSSQDS FT NILAFEVSIMKFLHIPVDLISDYIYLKQNTVSKLGAFATMRFTGEAATFLFNTMANMVF FT TFMRYSISKFDKIAFAGDDMCANRNLPVTNAFEEILSRMKLKAKVLRVRNPTFCGWCLT FT KFGIYKRPQLVAERLIIAIERGNLADCIDNYAIEVSYAYNLGERLVSIMSEKEVESHYF FT CVRTIIKNSKLCKSNISQLFNEGRSVSPGKLF" FT CDS 5622..6323 FT /codon_start=1 FT /product="TGB1" FT /db_xref="GOA:C1BEF9" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:C1BEF9" FT /protein_id="ACO38636.1" FT /translation="MEEVCEKLLELGYIRVESVSISYPIVVHGVPGCGKSFICKELAKD FT PKFKVQSFGVIPAGSLCGAVIHKALTEPSGDFNVLDEYLGGKDFNLERFDLVLSDPYQS FT FKKPERAHFTSNITRRFGSQVCCLLNKLGFDIIPHPSLPAEQTLLIEGSLFKTELRGII FT ITFEPAVAELIRAHGLEPKHPCDVRGAEFEVVTFCTAHADLQEIVSPELYISLTRATKE FT LRVLTNKFDES" FT CDS 6313..6657 FT /codon_start=1 FT /product="TGB2" FT /db_xref="GOA:C1BEG0" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:C1BEG0" FT /protein_id="ACO38637.1" FT /translation="MSLRPPTNYTNAILAASIGVAVGLLIHFVRRNELPHSGDNIHHLP FT YGGQYMDGTKCINYNRGFGGRNFSLLGTSSNSGIWLLLLTTGLLLYVTRSCFARGGYIY FT HSNCHIHRTV" FT CDS 6584..6793 FT /codon_start=1 FT /product="TGB3" FT /db_xref="GOA:C1BEG1" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:C1BEG1" FT /protein_id="ACO38638.1" FT /translation="MSPEVALLVVVIFTIATVIFTELFSSRGALGSQKGCYILVTGERA FT LVSGCELNKHTLEIVRSLKPARHF" FT CDS 6876..7673 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:Q8QSY0" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q8QSY0" FT /protein_id="AAL87671.2" FT /translation="MADKTETPKAPAAAETSKTPAVTETKKVAEKPTGLSSDDRNKLRR FT RRARGNVGSTSLISSPTREQMXAIRIEPDLISMASEDQLNAIMADWASSCKXPGTQAFS FT NAFDIVMYCVHNGSSELTEIRGKTSSGADREQLVAVIKNYCTLRQFCSKYAAIAWNYMI FT MNNEPPANWAKNQVTKNAKFAAFDFFDAVTSDCALQPAEGLVRMPSDIEHTAAATMKDM FT KLRRDELRRGTHTSNFTEVTGGRAGPKVPLKTVGTTSDNSFGH" FT 3'UTR 7674..7781 XX SQ Sequence 7781 BP; 2221 A; 1621 C; 1830 G; 2107 T; 2 other; cacaaaactg ctcgaaggca cagtttagta ccctgtatta acctcagtaa aacaggcttt 60 actacaactt ttataatggc tctccattat atttctgccc cagaacaggt tgtgtcgttg 120 ttctcatctg aagcgcaatc caggattagc gctatggctc tccaaaattt ctcttcattt 180 gaagaggaag ctcatgcggc cttcaattac cacctagagg cataccctaa atcaaggttg 240 tgcaagaagg gtgtgtattt atcaccgtat tcatttgtga gtcatagtca tcctgtttgc 300 aaaacacttg agtcctacat aataaacaaa aaaattgtga attatattga tgataagtac 360 atctttgttg gcattaaaga ttcaaaactt gctgccctca gagtaaataa aaagttaagg 420 atggcagaag tcattaacag gtatgtctcc gcccatgaca tacagaggta tggcgctgat 480 gcttacttca attgtgctaa aatggcatgg agagggagaa aggtagggct gcccctggtt 540 gatctagttc cccgagtttt aacatctggg aagagaagga tttttcttta tgatgaactg 600 cattactgga cgacaaatga tctcatagac tttatagaca tcaccaatcc agaggtcata 660 gtcgctacat ttgtttatcc taaggaaatt cttgttggat gcaaagaaag cttgaatcca 720 tgggcgtaca agttcgaaat ttttgggagc actattaaat ttgcacctga tggagtttgg 780 tcagagtcct atgaacaacc agtagaagct ggggatatct tgagattgaa taagcttgtg 840 acaaagcacg ggatttactc tattcaggtt agagattcta ttttttgtca cagtgtggtg 900 ataatctcaa aaggggattt ggtcacggag aaacgaagaa tcttttctga ttttgacgca 960 atacgcattg gcgagctcag accatataga gggcgtgttg atgaaatttt gccggttcgt 1020 catgatatag tgcttagtat tttcaagtat ctgcggacac ttaaaaaacc agatttgcag 1080 tctgcaatgg ccaagcacag acagatttgt gacgaaccaa ctggctttga ggtcagattc 1140 atagaagatt tctctgcttt tctacttgcc aataattgca cgcacgatct cattgaacgt 1200 ggctttggag ctctgctgaa gggagcagtc ttcaatttga tgcctgatta catgaagccc 1260 ttcttttcat ctctgaagga aatgagtttg agcagattca tagagcaggt caaacccttc 1320 gagttctacc ttgattgtga aaccgggcga agaagctttg acatccctgg gtggtgttac 1380 tctgtaattg aatcgtccat tgagtccacc aagaacatcc tggatgagaa aatcctagaa 1440 gttgcttgta agatcccttc tccaaaggcg acttcttcca atccttatga tttttccgcc 1500 tatgattgcg tgctgaatat ttggcaagat gcaaaacctt ccctctcaat agctagggcc 1560 atgcttgaaa ggctcatggc tggagctgtt aacgtctgtt ctttatcagc tgccagcaat 1620 ctctttggtg atggggaaac tgaattcaaa agaaaattga aaggaaactt gcttggcttc 1680 tacctgtcca acagaaaggc tttgcaacct ctgttaattc aggtcttggc gcaaatcaga 1740 agagaagcaa agatgattaa gcctttgaga ctacttaagc aagaatcata ctctgatgaa 1800 ttaagcaggt cgtcccccgc attgaagaag gcaaaatgtg gagtgcagta cttcaaggaa 1860 ctttttcaac tctgcaccat agaaatcctc agctctgtga atccagctga agttagtgcg 1920 gagggtgagg gcttgcgcgg aaccagcaag ccggaaaggg gggcagtcag tgttgaaccc 1980 acttgtctag cttcacccgc tggcaatgtg aatgaaaccg aggaaattcg ggctgacaca 2040 ggggagctgc ccagtgatgt tagttgttca actcctcttc accaagagcc taccactaac 2100 gagcccaacc ccgacaaatc gagtaacgtt agtgattcat cactaagtgc caacaatcct 2160 cactcaaaga tgggagatga atgggaaggg aagccaaaac ccgattgcca cagtgaggat 2220 tcaaaggaac gggtcactga atttctgctc aactgctcaa tcctaaggac tagagattgc 2280 tcatcaatcc cgaaagtggc tatctttcct gtccccgctg atggcgactg cttttggcat 2340 gctgcaggta gtgtgcttgg tgttgacgct ggcaagatca aggaacgcct ccgggagttg 2400 gctgctgaca ttgaggactc agatataaag agaaaggtac tgtttcaact gagtgagcgc 2460 gagtgggctg cggacgagtc aatcgccttc ttctgtgaca ctttcaacgt tcaaaccact 2520 gcctttgtgt gtgataagga tccactggtt tttacctcag tggttacttt ctgtccaatg 2580 agcggcgatt cggactcttt tcaaaatctg atggttaaat tcaactccgt cacccagcat 2640 tttgatttgg ccctgcctaa gaatgggtgt gtcatccgcg ccattgctga gttcttaaac 2700 cagaagccag ccaaggtact ctcagtgatc tctaaagaat gctcgaagga gcttgtggaa 2760 gacattatgt ctggcttggg ggtccaacct gtccacttga aggagctatt ttctttcttt 2820 gacattgcag ctgaagtccg ggagaacggt aactccagat tgatcaatgc aaagggcagt 2880 agatcagcca cattccaaat cagtgacgat catatgacgt tcttatgtag tggcagaagc 2940 tcagcttgcg gctctctatc tttacagcct agaattgtgt ccatgggtcc agaagctgat 3000 tatgaatcgt ttaccaaaga agggagcggc ttaatccaat acgagccatc ttttgaaagg 3060 gcctcacgcc tagcaaaatc tttacttcaa ggttccacag gggtgtttag cagtaaactg 3120 gtgtggaaga ggtatgactg gctgcaagac aaaagcaagc tacagtttgg aaagagaggt 3180 atcagctttt gtgtaggcac ctttggctcg gggaagtcca gcagcgcgat tcggtacttg 3240 aaagatcatc tgggatataa aaacactgtt gtgactccaa gaaggtttct ttgtaaccaa 3300 atcaaggagc aacttggatt caaagagggc aagatccgac gtggcgttca gacgaatgta 3360 cttacttttg aaactgcctt agcaaaaatc gctcaattga agaattcaag atttttcata 3420 gatgaaagtc aactatttcc tcccggttat ctcgacttgc tctgcctaat actacccagg 3480 gagtcaacta ttttcttgat gggggatcct gctcaatcgt cctatgattc tgaggctgat 3540 cgccacatat tcagcgacgt cagcaacgac cttgacgtat tgcttgataa gagcaactat 3600 cagtacttgg tttacagtca cagattcaaa aatccggtat tcaacaaaag gcttccctgt 3660 gaattccatg aaggttcctt caatttggtt tctgaaggct ggacctttta cagcagctgg 3720 gaggagatta agctggcaat atcaaagaag aacttttcat gcgatgcctt ccttgttagt 3780 gccttcgctg aaaaaaaatt ggtacaattt atgatgggaa agcaaactaa ggtttacacg 3840 tttggagagt caactggtat gaatctcaaa catgcttgtg ttttgctcac ttatgactct 3900 cagcaagctg atgagaaaag atggttagtg gctttatcca ggtccagtga aggaatcagc 3960 tttttgaatt tatctgggag aaccatgcag caatttgctg atgacatgag tcccagtgtt 4020 tttaccaaat ttgttagttc aactgccaag ctggaggatc tgcgctgctt gctgcctggg 4080 aagccatcct tcgttaaaaa atttcagaga attggctctg atgaagtaga cagggaggag 4140 agattgaagg gtgatccatg gctgaaaacc aaaatattct tgggccaaag agctgaagtg 4200 cctgttgagc cgcaagagtc tgaggagccg ccacctgtat taatgaagac tcactgccca 4260 ttgggatcac tgggcctgct gcaggcaagt catgacggcc atttgaaggc aaaagaaagg 4320 agggagaaaa gggtggactt cgaccttgtt actgaccagt tcacagagga gtattccaaa 4380 ggattttcac acgcgccagc tcctgaaaga tttgaggcca tatatcccag gcacaaggcg 4440 ggtgatactg caaccttcgt catggctgct agaaagaggt tgttcttttc acgaccaaat 4500 gttgaagccg ccaagcttag ggctgcactc ccatatggtg atatgatgaa ggacatcttt 4560 ctttcgcacg ttcccatcaa gcataattgg gatcaaaggt tgtttgagga gtcgaaggct 4620 gactttgaac gtaagaaact ggagaagagt gcagcaacca tagaaaatca ttctggaagg 4680 tcaaaccctg attggtcaat tagggaggca ctaattttta tgaagagtca gatctgtaca 4740 aagtttgaca atagatatag ggatgcaaag gctggacaaa cattagcttg ttttcaccac 4800 aatgtcttat gcagatttgc cccttacatt agatacatag aaaaaaaatt gtttcaggcc 4860 ctgcccaatc agttttacat tcatagtggg aaaaattttg atgacctcaa tgactggatt 4920 ctgaacgctg attttagcag ggtctgcacg gagtctgact atgaggcctt tgactctagc 4980 caagatagca acattctggc ctttgaagtt tctattatga aatttttgca cattcccgtg 5040 gacttgatct ctgattatat atacttgaaa cagaacacgg tgagcaaact tggtgccttt 5100 gcaacaatga gattcactgg agaggctgct acctttcttt ttaatacaat ggcaaacatg 5160 gtttttacct tcatgaggta cagcatcagc aagtttgaca aaatagcatt cgctggcgat 5220 gacatgtgtg ccaaccgaaa tttgccagtg acaaatgctt ttgaagaaat tctctccaga 5280 atgaagttaa aagccaaggt ccttagagtg cgaaacccaa ctttctgcgg atggtgcctg 5340 accaaatttg ggatttacaa gaggccgcaa ctggttgctg agcgactcat tatagccata 5400 gagcgcggga acttggcgga ctgcattgat aattacgcca tagaagtttc ctacgcctat 5460 aatttaggtg agaggctggt ctccatcatg tctgaaaagg aagtggaaag tcattacttt 5520 tgtgtaagga ccataattaa aaactcaaag ttgtgcaaaa gtaacatatc acagctgttc 5580 aatgaaggca gaagtgtcag cccaggaaag ctgttttagt catggaagaa gtttgtgaga 5640 agttgctaga actaggttat attagagtcg agtctgttag tatatcatac cctatagtag 5700 tgcacggagt tccaggttgt gggaagagtt tcatttgcaa agaacttgct aaggacccaa 5760 aatttaaggt tcaatctttt ggtgtgattc cagcaggaag tctgtgcggg gcggtgatcc 5820 ataaagcttt gaccgaacca tcaggtgatt ttaacgtttt ggacgagtac cttggtggca 5880 aagatttcaa ccttgagaga ttcgatttgg ttctgtctga cccgtatcag agcttcaaaa 5940 agccagaaag ggcccacttc acaagtaaca tcactagaag gtttggctcc caagtttgct 6000 gcttgttgaa caagttggga ttcgacatca ttccgcaccc atctctgcct gctgagcaaa 6060 ctttgctgat cgaaggcagc ttgttcaaaa ctgagcttcg gggtattatc ataacttttg 6120 agccagcagt tgctgaactg attagggcac acggtttaga gccaaagcat ccttgtgacg 6180 tcaggggggc agaatttgaa gttgtgactt tttgcactgc ccacgctgac cttcaggaga 6240 tagtttcccc agagctgtac atctcattga ccagagcgac taaggagtta agagtgctta 6300 ctaacaaatt tgatgagtct taggccacca accaattaca ccaatgccat tctcgctgct 6360 tcaattggcg tggctgttgg actactcata cattttgtta gaagaaatga gcttccacat 6420 tcaggcgata atatccatca tctgccctac ggtggccagt acatggacgg gacaaaatgc 6480 ataaattaca atcggggctt tggtggtagg aacttttcgc tgctaggtac tagctcaaac 6540 tccggtattt ggctcctctt gctaaccaca ggactgctgc tctatgtcac cagaagttgc 6600 tttgctcgtg gtggttatat ttaccatagc aactgtcata ttcacagaac tgtttagttc 6660 gagaggggca ctaggcagtc aaaagggctg ctacattctg gtcacagggg agagggctct 6720 cgttagtggt tgtgagctga ataaacacac cctggagatc gttcggtctc tgaagcctgc 6780 tcggcacttt taaaactggt taggttgctt cagggttgtt gataattaaa tattaacttt 6840 tgagaagatc tctacgtgct tagctagata gtgcaatggc tgataaaact gaaactccga 6900 aagcaccggc ggcggctgaa acctcaaaga caccagcagt tactgaaacc aagaaagtag 6960 cagaaaagcc aactgggctc agcagtgatg atcggaataa gctcaggagg cgcagagcca 7020 gaggcaatgt gggctctact tcacttatta gcagtcccac cagagagcaa atggakgcaa 7080 tcaggatcga acccgacctc atttctatgg ctagtgagga ccagcttaat gcaataatgg 7140 ccgactgggc gtcatcctgc aaarttcctg gtacgcaagc attctcgaac gcttttgaca 7200 ttgtcatgta ctgcgtacac aatggatcct cggagctgac tgaaatcaga ggaaagacgt 7260 cctcaggggc agacagagaa caattggtcg ctgtaatcaa gaactactgc accttgaggc 7320 agttttgctc caagtatgct gctatagcct ggaattacat gatcatgaac aatgaaccac 7380 ctgccaattg ggcaaagaac caggttacaa agaatgctaa atttgcagca ttcgacttct 7440 ttgacgccgt tacctctgat tgcgccttgc agccagctga gggcttggtc agaatgcctt 7500 ctgacataga acacactgct gctgctacga tgaaggacat gaaactgaga agggatgagc 7560 tcagaagagg aacccacact tccaacttca ctgaagttac tggcggaaga gctgggccta 7620 aagtacccct taaaactgtt ggtaccacat ccgacaactc ctttggtcat tagaccaaat 7680 tgttcatgca aagcctaaat aataaataaa catgagcaat tttaaataaa tcaaccttgc 7740 atgtttaata tatttgagca aaaaaaaaaa aaaaaaaaaa a 7781 //