ID AM999981; SV 1; circular; genomic DNA; STD; VRL; 2740 BP. XX AC AM999981; XX DT 29-SEP-2009 (Rel. 102, Created) DT 07-MAR-2015 (Rel. 124, Last updated, Version 2) XX DE Rhynchosia yellow mosaic virus, segment DNA-A, complete genome XX KW complete genome. XX OS Rhynchosia yellow mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2740 RA Ilyas M.; RT ; RL Submitted (14-MAY-2008) to the INSDC. RL Ilyas M., Plant Biotechnology, NIBGE, P.O Box. 577, Jhang Road Faisalabad, RL 38000, PAKISTAN. XX RN [2] RX DOI; 10.1016/j.virusres.2009.07.018. RX PUBMED; 19664665. RA Ilyas M., Qazi J., Mansoor S., Briddon R.W.; RT "Molecular characterisation and infectivity of a "Legumovirus" (genus RT Begomovirus: family Geminiviridae) infecting the leguminous weed Rhynchosia RT minima in Pakistan"; RL Virus Res. 145(2):279-284(2009). XX DR MD5; 6265e67f24c621da4b5eaefa0d6e0fd9. DR BioSample; SAMEA3283088. XX FH Key Location/Qualifiers FH FT source 1..2740 FT /organism="Rhynchosia yellow mosaic virus" FT /segment="DNA-A" FT /host="Rhynchosia minima" FT /mol_type="genomic DNA" FT /country="Pakistan:Lahore" FT /collected_by="Muhammad Ilyas" FT /collection_date="2007" FT /clone="MI33" FT /tissue_type="leaf" FT /db_xref="taxon:529680" FT CDS 145..513 FT /gene="av2" FT /product="pre-coat" FT /db_xref="GOA:C8TER6" FT /db_xref="InterPro:IPR002511" FT /db_xref="UniProtKB/TrEMBL:C8TER6" FT /protein_id="CAQ53910.1" FT /translation="MWDPLLNDFPLSVHGFRCMLAIKYLHAVQEGYPPHSLGYLLLQEL FT VRIVRCRDHAKAELRYGILKSDVISAEKTDLRQPFGPTCSCFTCPHHGQKKVMGQSPHE FT SEAPLLSIVPHSGRPARL" FT CDS 305..1078 FT /gene="av1" FT /product="coat protein" FT /db_xref="GOA:C7TPF5" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:C7TPF5" FT /protein_id="CAQ53911.1" FT /translation="MRKRSYDTAFSSPMSSARRRLTFDSPLALPAPALRAPTTVKRRSW FT ANRPMNRKPRYYRLYRTPDVPRGCEGPCKVQSFEQRHDISHVGKVICISDVTRGNGITH FT RVGKRFCIKSVYITGKIWMDENIKTKNHTNSVMFKLVRDRRPFGTAMDFGQVFNMYDNE FT PSTATVKNDLRDRYQVLRKFHHTVTGGQYASKEQAIVNRFYRVNNHVVYNHQEAAKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYDSISN" FT CDS complement(557..973) FT /gene="ac5" FT /product="AC5 protein" FT /db_xref="InterPro:IPR006892" FT /db_xref="UniProtKB/TrEMBL:C7TPF6" FT /protein_id="CAQ53912.1" FT /translation="MVLILGCFLMVIHYVVVYTIKPINYSLFLARILTTGYSMMKLAQN FT LITITQIVLHRSGTRLIIIHVKNLSKIHRRSKRPPVSNELKHHTVGVILGLDVFIHPNF FT PCNVNRLDAKTFADTMSNTVTTCHIRNAYHLTNM" FT CDS complement(1075..1482) FT /gene="ac3" FT /product="replication enhancer protein" FT /db_xref="GOA:C7TPF7" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:C7TPF7" FT /protein_id="CAQ53913.1" FT /translation="MDSRTGESITAAQQANGVYIWDVTNPLSFKIMQHQNALLGSNVKK FT TQIRIMFNHQLKKALGMHKCFLDLTIFHQWIHSCGRICLTFKNMLLRFLNKLGVISIQT FT VLAGCTNVLCDQLKVAYDDVHLSHEIKYNIY" FT CDS complement(1223..1636) FT /gene="ac2" FT /product="transcriptional activator protein" FT /db_xref="GOA:C7TPF8" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:C7TPF8" FT /protein_id="CAQ53914.1" FT /translation="MRNSTPSKHHCSPPSIKAQHRFAKKKPRAIRRTRIDLRCGCSYYF FT HVNCRNYGFTHRGEHHCCSAGEWRLYLGRNKSPVFQDNATPERTPGQQREENPDPHNVQ FT PSAEESVGDAQVFPGLDDIPSMDSQLWADLLNF" FT CDS complement(1530..2624) FT /gene="ac1" FT /product="replication initiation protein" FT /db_xref="GOA:C7TPF9" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:C7TPF9" FT /protein_id="CAQ53915.1" FT /translation="MPTPGRFCINAKNYFLTYPRCPLSKEETLSQLLALQTPTNKKFIR FT VSRELHEDGTPHLHVLLQFEGKFQTRNQRFFDLVSQTRSAHYHPNVQAAKSASDVKQYV FT EKDGDYIDHGDFQVDGRSARGGKQSANDAYAEAINAESKSEALTILKEKAPKDYVLQFH FT NLNCNLDRIFVPPVPIYSSPFNLATFNNVPEGLRAWAEQNVKDSAARPHRPISVVIEGD FT SRTGKTMWARALGRHNYLCGHLDLSAKMYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNVKYGKPTHIKGGIPTIFLCNPGPRSSYKEYLDEANNASLKSWALKNAEFYTLEAPL FT FTSVNQSATQVRQEETQSNSQNPN" FT CDS complement(2174..2467) FT /gene="ac4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:C7TPG0" FT /protein_id="CAQ53916.1" FT /translation="MEHLISMFCCNSKGSSKPETKGSSTWYPKPGQHITIQTFRRLRAP FT QMLNNTWRKTETTLTMEISKSMDAQLEEVSSLPTTLMPKQSMQSPNQRRSLY" XX SQ Sequence 2740 BP; 679 A; 584 C; 660 G; 817 T; 0 other; acctgaggac cccgcgaccg gaggataggg ttttgccttt ggggaccacg ctgctttttg 60 tcgttcaatg agagacgctc ctcagcgctt agataattca aatttgaatt ataaacttgc 120 gcactacgtt ttgcgcattt aatcatgtgg gatccgctgt tgaacgactt tccgctctca 180 gtgcatggtt ttcgatgtat gcttgcaatt aagtatttgc acgctgtcca agagggttac 240 cccccgcatt ctttgggtta tttgcttttg caggagttag tgcggatagt gcgctgtagg 300 gaccatgcga aagcggagct acgatacggc attctcaagt ccgatgtcat cagcgcggag 360 aagactgacc ttcgacagcc ctttggccct acctgctcct gctttacgtg cccccaccac 420 ggtcaaaaga aggtcatggg ccaatcgccc catgaatcgg aagccccgct attatcgatt 480 gtaccgcact ccggacgtcc cgcgcggctg tgagggccca tgtaaggttc agtcatttga 540 acagcgtcac gacatatcac atgttggtaa ggtgatatgc atttcggatg tgacacgtgg 600 taacggtatt actcatcgtg tcggcaaacg tttttgcatc aagtctgttt acattacagg 660 gaaaatttgg atggatgaaa acatcaagac caagaatcac accaacagtg tgatgtttaa 720 gctcgttaga gacaggaggc cgtttggaac ggcgatggat tttggacaag tttttaacat 780 gtatgataat gagcctagta ccgctacggt gaagaacgat ttgcgtgatc gttatcaagt 840 tttgcgcaag tttcatcata ctgtaaccgg tggtcagtat gcgagcaagg aacaagctat 900 agttaatagg ttttatcgtg taaacaacca cgtagtgtat aaccatcagg aagcagccaa 960 gtatgagaac catactgaaa acgctttgtt attgtatatg gcatgtactc atgcttcaaa 1020 cccagtgtat gcaacattaa agattcggat ctatttttac gattcgatat caaattaata 1080 aatattgtat tttatttcat gggaaaggtg tacatcatca taagcgacct ttaattggtc 1140 gcataataca tttgtgcatc ctgctaatac agtttggatg cttataactc ctaatttatt 1200 taaaaatcta agcaacatat ttttaaaagt taagcagatc cgcccacagc tgtgaatcca 1260 ttgatggaat atcgtcaagt ccaggaaaca cttgtgcatc cccaacgctt tcttcagctg 1320 atggttgaac attatgcgga tctgggtttt cttcacgttg ctgcccagga gtgcgttctg 1380 gtgttgcatt atcttgaaag acaggggatt tgttacgtcc cagatataga cgccattcgc 1440 ctgctgagca gcagtgatgc tctcccctgt gcgtgaatcc atagttgcga cagttgacgt 1500 ggaagtagta agagcaccca cagcgtaaat caattcgggt tctgcgaatt gctctgggtt 1560 tcttcttggc gaacctgtgt tgcgctttga ttgacggagg tgaacagtgg tgcttcgagg 1620 gtgtagaatt ccgcattctt taaagcccac gatttgagcg atgcgttgtt tgcctcgtct 1680 agatactctt tataggagga tctgggcccc ggattgcata ggaatatggt ggggatacct 1740 cctttaatgt gagtgggctt tccgtatttc acgttgcttt gccagtctct ctgagcgccc 1800 atgaactctt taaaatgctt tagatagtgc ggatcaacgt catcgattac gttgtaccat 1860 gcgtcgtttg aatacatttt ggcgctcaaa tctaaatgac cacacaagta attgtgtcga 1920 cctaaggctc ttgcccacat ggttttaccc gtacgactat cgccctcgat aacgacacta 1980 ataggtctat gtggccgcgc agcggaatcc ttcacgttct gttcagccca ggcacggaga 2040 ccttctggaa cattgttgaa tgtagctagg ttgaacggcg aactgtaaat agggaccgga 2100 gggacaaaaa tcctatctaa attacaattt aaattatgaa attgtaagac gtaatccttt 2160 ggggctttct ccttcagtat agtgagcgcc tctgatttgg actctgcatt gattgcttcg 2220 gcataagcgt cgttggcaga ctgcttacct cctctagctg agcgtccatc gacttggaaa 2280 tctccatggt caatgtagtc tccgtctttc tccacgtatt gtttaacatc tgaggcgctc 2340 ttagccgcct gaacgtttgg atggtaatgt gctgacctgg tttgggatac caggtcgaag 2400 aacctttggt ttctggtttg gaacttccct tcgaattgca gcagaacatg gagatgaggt 2460 gttccatctt cgtgtagttc acgagagacc ctgatgaact tcttgttagt aggcgtttgt 2520 aacgcaagga gctgcgaaag tgtttcttct ttggatagag gacagcgagg ataggttaag 2580 aagtagttct tagcgtttat gcaaaaacga cctggagttg gcattttgaa ggtcgttttg 2640 ctatcgggtg ataccccaat tgctctataa gtccttctat cggtgtattg gagtcctata 2700 tatatgatta gaattctcaa ggggtcctca gtataatatt 2740 //