ID AM942044; SV 1; circular; genomic DNA; STD; VRL; 2734 BP. XX AC AM942044; XX DT 20-DEC-2008 (Rel. 98, Created) DT 04-APR-2013 (Rel. 116, Last updated, Version 2) XX DE Wheat dwarf virus complete genome, isolate SxA 57 XX KW C1-1 gene; coat protein; complete genome; CP gene; rep gene; RepA; KW replicase; Tra gene. XX OS Wheat dwarf virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2734 RA Schubert J.; RT ; RL Submitted (18-FEB-2008) to the INSDC. RL Schubert J., Inst. for Biosaf. of Genet. Modif.Plants, Julius Kuehn Inst., RL Fed. Res. Centre, Erwin-Baur-Str. 27, D-06484 Quedlinburg, GERMANY. XX RN [2] RA Schubert J., Habekuss A., Qui Y., Zhou X.; RT "Appearance of defective forms of Wheat dwarf virus"; RL Unpublished. XX DR MD5; d572198476841324516d156e400f370e. DR GrainGenes; AM942044; AM942044. XX FH Key Location/Qualifiers FH FT source 1..2734 FT /organism="Wheat dwarf virus" FT /isolate="SxA57" FT /mol_type="genomic DNA" FT /country="Germany:Saxony-Anhalt" FT /isolation_source="Triticum aestivum" FT /collected_by="A. Habekuss" FT /collection_date="31-Mar-2007" FT /identified_by="J. Schubert" FT /db_xref="taxon:10834" FT misc_structure 1..171 FT /gene="Long intergenic region" FT /function="bidirectional promoter" FT /note="join with 2500-2734" FT CDS 172..444 FT /gene="Tra" FT /product="hypothetical protein" FT /function="virion transport" FT /db_xref="GOA:Q5K2S1" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:Q5K2S1" FT /protein_id="CAQ03739.1" FT /translation="MDQVFTPPRSIRADQYQAPYDPGSSDYAWRTFVFVSFGLLISVGV FT VWLAYTLFLKDCILVWKAKKQRRTEEIGYGNTPARPNGDQQGLPR" FT CDS 416..1198 FT /gene="CP" FT /product="coat protein" FT /function="encapsidation of DNA" FT /db_xref="GOA:A6GVG4" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:A6GVG4" FT /protein_id="CAQ03740.1" FT /translation="MVTNKDSRGKGKRKLEEGESSGRWKGQVYKRRKQTYKVVPVRPPA FT LCVYRYNWLNSDKTNIVVGNTPRIDLITCFAAGKADNNRHTNQTILYKFNLQGTCYVSD FT SSCMFITPIRVYHWLVYDAEPKQATPDSTDIFTMPWNLLPSSWTVQRAWSHRFVVKRKW FT CVNLVSDGRKVGSKTVDSRYNYVVGKNIVDASKFVKGLRVTTEWMNTGDGKIGDIKKGA FT LYLVTCTRGGITGDSASISFEVVCAYTHACYFKSIGIQ" FT misc_structure 1199..1369 FT /gene="short intergenic region" FT /function="promotor" FT mRNA complement(join(1370..1783,1870..2499)) FT /gene="rep" FT CDS complement(join(1370..1783,1870..2499)) FT /gene="rep" FT /product="replicase" FT /function="replication complex" FT /db_xref="GOA:B7FDI4" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:B7FDI4" FT /protein_id="CAQ03741.1" FT /translation="MASSSAPRFRVYSKYLFLTYPQCILEPQYALDSLRTLLAKYEPLY FT IAAVRELHEDGSPHLHVLVQNKLRASITNPNALNIGMNTSPFSFFHPNIQAAKDCNQVR FT DYIMKEVDFDVNTAEWGTFVAVTTPGRKDRDADMKQIIESSTSREEFLSMVCHRFPFEW FT SIRLKDFEYTARHLFPDPVSTYTPEFPIESLMCHETIESWKNDHLYSESPGRHKSIYIC FT GPTRTGKTSWARSLGIHNYYNSLVDFTTYDVNAKYNIIDDIPFKFTPNWKCFVGAQRDF FT TVNPKYGKRKMIRGGIPCIILVNPDEDWLKDMTPEQSDYMYSNAVIHYMYEGESFFAFG FT ENVTASQ" FT exon complement(1370..1783) FT /gene="rep" FT /number=2 FT CDS complement(1705..2499) FT /gene="C1-1" FT /product="RepA" FT /function="replication complex" FT /db_xref="GOA:B7FDI5" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:B7FDI5" FT /protein_id="CAQ03742.1" FT /translation="MASSSAPRFRVYSKYLFLTYPQCILEPQYALDSLRTLLAKYEPLY FT IAAVRELHEDGSPHLHVLVQNKLRASITNPNALNIGMNTSPFSFFHPNIQAAKDCNQVR FT DYIMKEVDFDVNTAEWGTFVAVTTPGRKDRDADMKQIIESSTSREEFLSMVCHRFPFEW FT SIRLKDFEYTARHLFPDPVSTYTPEFPIESLMCHETIESWKNDHLYSVSLESYILCTST FT PADKAVTDLEWMDDYSRSHRDGISPSTSAVRQEQERLPGQDL" FT intron complement(1784..1869) FT /gene="rep" FT /number=1 FT exon complement(1870..2499) FT /gene="rep" FT /number=1 FT misc_structure 2500..2734 FT /gene="Long intergenic region" FT /function="bidirectional promotor" FT /note="join with 1-171" XX SQ Sequence 2734 BP; 696 A; 605 C; 744 G; 689 T; 0 other; accctgcgtg gtgggtcccg aggcgcactc ggcttttcgt gagtgcgccg aggcttttgg 60 accacgtctt tatgtcatca ctcgaattat tggtggtgag tcatcaccct ttgcagctgc 120 aattatgtgt tatcgcttag cttataagga agtgtcgggg aaggtatctc gatggatcag 180 gtctttacac cgccgcgttc tatacgggca gatcaatacc aggcccctta cgatcccggg 240 tcctccgact acgcctggcg gacctttgtg ttcgtctcct tcggtttgtt aatatccgta 300 ggagttgttt ggttggctta cactctgttc ttgaaggact gcatattagt gtggaaggcg 360 aagaagcaga ggaggaccga ggaaattggt tacggtaata caccggccag accaaatggt 420 gaccaacaag gactcccgag gtaagggaaa gaggaagctc gaggagggcg aatcgagtgg 480 aaggtggaag gggcaagtgt ataagcggcg taagcagacc tacaaggtag tacccgtgag 540 gccacccgcc ctctgtgtgt accggtataa ctggctcaat tcagacaaga ccaatatcgt 600 ggtgggtaac acccctcgga ttgatctgat tacctgcttt gcagcgggca aggccgataa 660 taatcggcat acaaatcaga ccatcctcta caagtttaac ctgcagggga cctgttacgt 720 gtcggactcc tcatgtatgt tcataacccc aatcagggtt tatcactggt tggtctatga 780 tgcagagccg aagcaggcta cgcctgactc cactgacatc tttacgatgc cgtggaatct 840 cctgccgagt tcatggactg tgcagagggc ttggtcgcat cggttcgtgg tgaagaggaa 900 gtggtgcgtg aacctggtct ccgatggaag gaaggttgga tccaagacgg tggactcccg 960 ctacaactac gtagtgggga agaatatcgt tgacgcctcc aagttcgtga agggtttacg 1020 cgtgacgacg gagtggatga acacgggtga cggcaagata ggcgatatta agaagggtgc 1080 cctgtaccta gtaacctgta ctcgtggagg aatcactggt gacagtgcct ccatttcatt 1140 cgaagttgta tgtgcctata cgcacgcgtg ttacttcaaa tccattggga ttcaataaat 1200 aaaatagtat tttattcatc tcatgtcatt cgattacaga tgctcggcta cgagcaaaga 1260 taaaccaaac tatgacatac aacacactca taaccaaaac atcgaaaaaa gaaatacaag 1320 gggcgagatc acacaatttt agaaaccgta gccgtccgcg ctaggacagt cactgcgaag 1380 cagtgacatt ttcgccgaag gcgaagaatg attcaccctc atacatataa tgtatcacag 1440 cgttagagta catgtaatcc gactgttcag gagtcatatc cttgagccaa tcttcgtctg 1500 ggttaactaa aatgatgcaa ggtataccac cccgtatcat ttttcgcttc ccgtacttag 1560 gattgacggt gaagtcacgc tgagccccga cgaagcactt ccagtttggc gtgaacttga 1620 atggaatgtc gtcaattatg ttgtacttgg cgttgacgtc ataggtcgtg aaatcaacta 1680 ggctgttgta gtagttgtgg atccctagag atcttgccca ggaagtcttt cctgttcttg 1740 tcggaccgca gatgtagatg gacttatgcc gtcccggtga ctcctggaat aatcgtccat 1800 ccactctaaa tcagttacgg ccttatccgc aggagtggaa gtacaaagga tgtatgattc 1860 gaggcttacg gagtatagat gatcattttt ccagctttca atggtctcat gacacatgag 1920 ggactcgata ggaaactcag gtgtgtaagt gctaactggg tctgggaata ggtggcgtgc 1980 agtgtattcg aagtctttca gacggataga ccattcaaac ggaaaacgat ggcagaccat 2040 gctgagaaat tcctctctcg aggtactcga ctcaatgatc tgtttcatat ccgcgtctcg 2100 gtctttacga cccggagtgg taactgctac gaatgttccc cactcagccg tgttgacatc 2160 gaagtcaacc tccttcatga tgtaatcacg aacttggttg cagtctttgg cagcttgaat 2220 gttaggatga aaaaatgaaa atggagaggt gttcatacca atgttgagag cattgggatt 2280 ggtgatggaa gcacgaagct tgttttgcac gagtacgtgc agatgtggtg atccatcttc 2340 gtggagttcc ctaactgcag ctatgtacag aggttcatat ttggccaaga gagtgcgaag 2400 agagtccaag gcgtactgtg gctctaggat gcattgagga tatgttagga agaggtattt 2460 ggaatagaca cggaacctgg gtgcagatga agaggccata gtaggaagca gaagcccggc 2520 aggtccttag cgaaaaaacg gggtgtgcac tcgaactcta ctctctaccc tgcgtgcccg 2580 tgtgcagaat tcacacggat gtgctcggtg tccacggttt aaataatgca ggaataggtg 2640 ggaacgcggg accctgtctt tcccgcgcga aagcgacggg tggtcccgcg tgtggtttgt 2700 ggctcgggga cccgccacgc aggaatctaa tatt 2734 //