ID AM087671; SV 2; linear; genomic RNA; STD; VRL; 5873 BP. XX AC AM087671; XX DT 29-MAR-2006 (Rel. 87, Created) DT 12-DEC-2007 (Rel. 94, Last updated, Version 2) XX DE Artichoke yellow ringspot virus partial gene for polyprotein, genomic RNA, DE from Allium cepa XX KW polyprotein. XX OS Artichoke yellow ringspot virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RC revised by Author (12-DEC-2007) RP 1-5873 RA Maliogka V.I.; RT ; RL Submitted (29-SEP-2005) to the INSDC. RL Maliogka V.I., Faculty of Agriculture, Aristotle University of RL Thessaloniki, P.O. B. 269, Thessaloniki, 54124, GREECE. XX RN [2] RX DOI; 10.1094/PHYTO-96-0622. RX PUBMED; 18943180. RA Maliogka V.I., Dovas C.I., Lesemann D.E., Winter S., Katis N.I.; RT "Molecular Identification, Reverse Transcription-Polymerase Chain Reaction RT Detection, Host Reactions, and Specific Cytopathology of Artichoke yellow RT ringspot virus Infecting Onion Crops"; RL Phytopathology 96(6):622-629(2006). XX RN [3] RA Maliogka, V I., Dovas, C I., Lotos, L, Katis, N I.; RT "Nucleotide sequence of Artichoke yellow ringspot virus RNA1"; RL Unpublished. XX DR MD5; f650768c8ceeb76835936fa90a02834d. DR EuropePMC; PMC2861173; 20229114. XX FH Key Location/Qualifiers FH FT source 1..5873 FT /organism="Artichoke yellow ringspot virus" FT /mol_type="genomic RNA" FT /country="Greece:Peloponnesos" FT /isolation_source="Allium cepa" FT /db_xref="taxon:348894" FT CDS 1..4983 FT /transl_table=1 FT /product="polyprotein" FT /db_xref="GOA:Q1XEP0" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/TrEMBL:Q1XEP0" FT /protein_id="CAJ33467.2" FT /translation="MWWASAMLLSAGIVAIIEKILVKMEIIAYPGVLVGCFLSSILAYM FT GYTALDDNGAVKMLMRTIKQSIISLYVQKETSPAEVRAIVHGDADMIAHSVGEVPLRFL FT NAIGSGLIAAPLGTLQYAGKYGAALDQIRRGKDAMKEFMGWTIECIGDAWDMYSGRRDT FT FFHEIARLTKVDIVKWIRDSQNIILQSQTAANTDPLLLEMCTRALSKGWKLQQSLAKGK FT RTTNVDYGFIVGKYVTELQSIRARCAMAGKMEGRRKEPFWVYIYGESHCGKSLLMEPII FT DALTDELGLPAGDTYAKNGRDNFWPGYTRQAVVTVDDLSATIAQPSLESEFMQLVGSKP FT YALNMAAVEEKGMLFSSRVIVTSSNFFDAPTKAEIQDRVAYQNRRNVVVWCRRKPDSEF FT DPTNPHASCEAVFVDRKTEQQIGEWRNCEALIDEIKIKAAAHDEKEEKLQAHYLGSHRR FT VHPIHNDIQDFLRAGIVMTKHLADTNYDTYRENWLDANLAVDGKLYKVSLKNVCDELLE FT LPPDGFEEACLARIPTLSTAMADEGVSEFVQTVIEGMIEGPSFVESVDKMSAETPADHR FT EFFSRLPLGERVYFRLLQKRFEQLKADKDFNFQIDMKVRVLKSLKSSYDKVVENGGRIF FT LVCCAFIMIYFAYSTFFSIFNAFVGGSSAGMAGALITQLDAHSVYSSGASVQSYRSRNL FT PTTYRQRMMAHSQDDSKKLADEDAKFKTDLLVRLTIPGGRVICAVRFYGRSLLMTKHQA FT MAMRKGDRIMCNYTARGVQSGKIEFLYDPSRLTEFPDTELVQYADNVLSPLPNPAHNAF FT AFDHAKLKGTLQLFGAVIKLRRHCGDHTIGLENVDGDVPTLHKWDAIGNITTTRQTIST FT FVDGAPYYNDIPKYLHSNSPTTVEDCGAIMTALVDGEYRVVGIHVAGGVTPTGQYTSMA FT CLIPYVPHFECHSRMPPLEERVGIDTLGCTKIGFVSNPVERPYYATKTQFVEVPEMVKI FT PYHDVKIPSVLAKGDTRLRGTEHEAYDPLKNGMSKYEEPMSLVDEKLLREVAQEIVETW FT HDCEDGTFGDADDDVVINGIDGEDFFDALVMSTSEGYPYIKERNIGEKGKARYFEPTGD FT GCRKQLIQGTMVAQDIEYLKETVHEIVPEIICVETPKDERLPVRKVTGKPKTRLFSALP FT LSYNFMLRKKFLYFVAFLQKNRGRLPCQVGINAYSREWQTLYNRLAERSENALNCDYSS FT FDGLMTGQMLSCIGDMINTMYGDSQKSKNGRKNLLMAICNRKSLCGADAYEVRAGIPSG FT CALTVLLNSIFNEILVRMVYKTVVPGVPRNHFSEYVTLLVYGDDNLIAVDPSILEVFNG FT DVIKKTMAKWRVTITDGSDKLSPTLTEKPLLSLDFLKRGFKLADNGQVYAPLDKTAIYS FT SLHWVAGRGQDVMSALKDNARSALIEMWAHQDKAEFVELRSFYVSKIPSWSDLPTWDQA FT RCFHEAQQHGAMPYRPQASMELLVDMHTDKKMMANHGEQDHLIYVQPRIAVSGPKWIIE FT SCDKQFVVSTLPLSRAEKFSGIHIPVECGDGLGRMPSQDWVRRFRRIRHVQIRVIYDAY FT AAGKTIIFKDVAPYIAGWTAAISFACAQQYSYRDMLNRYNNVCTPNSSGIEQYFAKDMA FT MKCKLPFHPPGEKCTCDVPSPR" FT 3'UTR 4984..5873 XX SQ Sequence 5873 BP; 1579 A; 1092 C; 1500 G; 1702 T; 0 other; atgtggtggg ccagtgccat gctattatcg gctggcattg tagccattat tgagaagatt 60 ttagtgaaga tggagattat cgcctatcca ggtgtccttg tggggtgttt cttgtcaagc 120 attctggcct acatgggata tactgctttg gatgacaatg gtgctgtcaa aatgctgatg 180 agaacaatca aacagagcat catttccctc tatgtccaaa aagaaacctc gccagctgaa 240 gtgcgcgcca ttgtacatgg tgatgctgat atgattgccc attctgttgg ggaagtgccc 300 ttgcgtttct tgaacgcaat tggaagtggt ttgattgccg ctcctctggg cacactgcaa 360 tatgctggaa agtatggtgc tgcgcttgat caaattaggc gtggtaagga tgctatgaaa 420 gagttcatgg gatggactat tgaatgcata ggagatgcgt gggacatgta tagtggcagg 480 agagacacat tcttccatga gattgcccga ttaacaaagg ttgatatagt gaagtggatc 540 cgtgattcac agaatatcat cttgcagtct caaacagcag ccaatactga tcctttgctt 600 cttgaaatgt gcacccgggc tctttctaag gggtggaagc tgcaacagtc cctagccaag 660 ggcaaacgta caacaaatgt ggattacgga ttcatagttg ggaagtacgt cactgagcta 720 cagagtatac gtgctaggtg tgcaatggca gggaagatgg aaggaaggcg caaagaacca 780 ttctgggtct acatttatgg cgaatctcat tgtgggaaat cgttgttgat ggaacctatt 840 atagatgcgc taactgatga gctaggatta ccagctggtg acacctatgc aaagaatggc 900 cgtgataatt tttggccagg ttacacaaga caagctgttg tgacggttga cgatctatca 960 gctacaattg cgcagccaag tcttgagtca gagttcatgc aacttgtggg ctcaaagcct 1020 tatgcactta acatggccgc cgttgaggag aaaggaatgt tattttcatc acgagtgata 1080 gtaacctctt ccaatttctt tgatgcacca acaaaggctg agattcaaga tagggttgcg 1140 taccaaaacc gtcgcaatgt ggtggtttgg tgccgtagaa agccagatag tgaattcgat 1200 ccaaccaacc cgcatgcttc ttgtgaagct gtttttgtgg accgaaagac ggagcagcaa 1260 attggtgagt ggcgcaattg tgaggcgctc attgatgaaa ttaagattaa ggcagctgct 1320 cacgatgaaa aagaggagaa gcttcaggct cactacttgg ggtcacaccg cagggttcat 1380 ccaatacata atgatattca agattttctg cgggctggta ttgtgatgac gaagcatttg 1440 gcagacacaa actacgatac atatcgtgag aattggctag atgcaaacct tgcggtggat 1500 ggtaaacttt acaaagtgag cttgaagaat gtgtgtgatg agttgctgga actacctccg 1560 gacggatttg aagaagcttg tttggcacgt attccaacgt tgtcaacagc tatggctgat 1620 gagggagttt cagaatttgt gcaaactgtt attgagggca tgatagaagg tccctctttt 1680 gtagaatctg tagataagat gtctgccgaa acaccagcgg atcataggga gttcttctcg 1740 cgcttacctc tcggtgagcg tgtgtatttc cgactcttgc aaaagaggtt tgagcaattg 1800 aaagctgata aagatttcaa ttttcaaatt gatatgaagg tgcgtgtttt gaaatcatta 1860 aaatcatctt atgataaggt ggttgaaaat ggtggacgga tttttctagt ttgttgtgct 1920 tttattatga tttatttcgc atatagtact ttcttttcta tttttaatgc ttttgtaggt 1980 ggctccagtg ctggcatggc tggagccttg ataactcaac ttgatgcaca ctctgtttat 2040 agttctggtg cttcagttca aagttatcgg tcacgcaatt tgccaacaac gtatagacag 2100 cgaatgatgg cgcactctca ggatgattcc aagaaattgg cggatgagga cgcgaaattt 2160 aaaactgatt tgttggtgcg tttaactatt cctggtggtc gtgtcatttg tgccgtgcgc 2220 ttctatgggc gctcactact catgactaaa catcaggcca tggcgatgcg taaaggtgat 2280 cgtatcatgt gtaattatac tgccagaggt gtgcagagtg ggaagatcga atttttgtat 2340 gatccttccc gtctcactga gtttcccgat actgagcttg tacaatatgc tgataatgtg 2400 ctcagtccgt tgcccaatcc agcccacaat gcttttgctt tcgaccatgc taagcttaag 2460 ggaacactcc aactttttgg agctgtcatc aaattgcgaa gacattgtgg tgatcacaca 2520 attggtttgg agaatgtgga tggggatgtg ccaacattgc ataaatggga tgctattggt 2580 aatatcacta caactaggca aactatttct acttttgtgg atggagcgcc ttattacaac 2640 gatatcccaa agtatctcca ttctaattcc ccaaccacag ttgaagattg cggagctatc 2700 atgacagccc tagttgatgg tgaatacagg gttgtgggca ttcacgttgc gggtggtgtg 2760 actccaacag ggcaatatac atcaatggca tgtttgatcc cgtatgtgcc acattttgag 2820 tgccattcac gaatgccccc attggaagag agagttggta ttgacacact tgggtgtacg 2880 aagattggtt ttgtgtccaa tcctgttgag agaccctatt atgcaacaaa aacacagttt 2940 gtggaagttc cagaaatggt taaaatacca taccacgatg ttaagatacc tagtgtttta 3000 gcaaaggggg atacccgtct gaggggtacg gaacacgagg catatgatcc actgaagaat 3060 ggtatgtcca agtatgagga gccaatgagt ttagttgatg agaagctttt gcgtgaagtc 3120 gctcaagaaa ttgttgaaac ttggcacgat tgtgaggatg gtacctttgg tgatgccgat 3180 gatgatgttg tgatcaatgg tattgatggt gaggatttct tcgatgcgtt ggttatgtca 3240 acgtccgagg gatatcctta tattaaggaa cgcaacatcg gagagaaagg caaggctagg 3300 tattttgagc caactggaga cgggtgtagg aagcaattga tacagggaac catggttgcg 3360 caggatattg aatacctgaa agagactgtg cacgaaattg ttcccgaaat tatttgcgtt 3420 gaaacaccca aagatgagcg cttgccagtc cgaaaggtta ctggtaaacc aaaaaccagg 3480 ttgttctctg ctctacccct gagttacaat tttatgctac gcaagaagtt tttatacttt 3540 gtggcattcc ttcagaagaa tcggggtagg ttaccatgcc aagtggggat taatgcgtat 3600 tcccgcgagt ggcaaacact gtacaatcgt ttagcggaaa gaagtgagaa tgccttgaac 3660 tgtgattatt catcttttga tggtctaatg acagggcaga tgttatcttg cattggagat 3720 atgatcaata cgatgtacgg tgactcccaa aaatccaaaa acggccggaa aaatcttttg 3780 atggccatat gtaatcgcaa gtcactttgt ggagccgatg cttatgaagt gagggctgga 3840 ataccttcag gatgtgcttt aacggtgttg ttaaattcca tttttaacga gattttagtt 3900 agaatggtgt acaaaacagt tgtgcctggg gttccacgca atcatttcag tgagtatgtc 3960 actctattgg tttatgggga tgataatttg atcgctgttg acccctctat tttggaggtg 4020 ttcaatggtg atgtgataaa gaaaaccatg gccaaatgga gagtcactat tactgatggt 4080 agtgataagt tgtcaccgac tcttactgag aagcctctct tatctcttga tttcttaaag 4140 agaggcttta agttggcaga caatggacag gtatatgctc cactcgataa aacggcaatc 4200 tactcttcat tgcactgggt ggcgggccgc ggtcaggatg tgatgtcggc actaaaagat 4260 aatgcacgta gtgcactgat tgaaatgtgg gcacatcaag ataaggctga gttcgtggaa 4320 ttgcgctcgt tttatgtgag taaaatacca tcttggtctg atctcccaac ctgggatcag 4380 gctagatgtt ttcatgaggc gcaacaacat ggagctatgc cctacagacc gcaggcatca 4440 atggaattgc tggttgacat gcacactgac aagaaaatga tggcaaacca tggtgaacag 4500 gatcatttga tatacgttca accacgtatt gctgtttcag gacctaagtg gatcatagag 4560 agttgtgata aacaatttgt tgtctcgact ttgccattgt cacgtgcaga gaaattttca 4620 ggaattcaca tacccgtgga atgtggagat ggcctggggc gaatgccgtc gcaggattgg 4680 gtgaggagat ttaggcgtat ccgtcatgtg caaattcgtg ttatttacga cgcgtatgcg 4740 gcgggtaaaa ctataatttt caaggatgtt gcaccataca tagctggatg gactgccgct 4800 atctcttttg cctgtgctca acagtacagc tatagggata tgctgaatag gtataataat 4860 gtttgtaccc caaattcatc gggtattgag cagtattttg ccaaagatat ggctatgaag 4920 tgcaaactac cattccaccc acctggtgaa aagtgtactt gcgatgttcc ttcaccccgt 4980 tgagagtaac ggggtctggt tgtcaacaag ccagtctgct aaatttgttg agaacctctg 5040 gtcttaattg attggagtta tgctttattt tgtgttttgt tttacacaac atcaaaactc 5100 acacatttgt gtgataccac tttggttccc gtgaaatcgg taattgatgg ttgtagagtc 5160 tcccacttgg gatagaggac tatggttccc ctcgataaaa acgaactacg tgctgagtaa 5220 taggctttct ccagggtggt atgccgtccc ctggctcagt atgaagattt ggtgcttttt 5280 gtcagatatg agcacccccg cttcacacgg ggttaagtca gtgtagtaaa ggtgaaatat 5340 tccctggggc actggttaac gtgaacgttt ggcgcgataa gtctaaaggt atgtgtacaa 5400 caccttctgt actcaagatc gaagtttggc aactgagatt ggatgagggc ccgagatgaa 5460 tacggggagg taataaacct caggaaggca cacatgctga tttccaaatt tatgtaaatt 5520 tggcgttgga agtgaaggtt cgacgatata gaactttcaa gagctaggct gatgtcaatt 5580 tggcacaaac ccaatagatc atggaccctg gaattgatac ccgggagtaa atccacacca 5640 gatggagtga gttttaatga tcccctcaca cgtggtggga gaatctattg gcatttgtgg 5700 ggttggcaga accctagtaa ggacattgtt tctgacaggt ttgttggtcc tattgagttt 5760 tctaaacctg ttttatcgta tgataagctc ctctgacttt cactagttgg agttctgtga 5820 gcattgggct gatggacgga ctttaattag ttcttactga agcttttagt gga 5873 //