ID AJ877020; SV 1; linear; genomic RNA; STD; VRL; 4446 BP. XX AC AJ877020; XX DT 19-MAR-2005 (Rel. 83, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 2) XX DE Rice yellow mottle virus complete genome, isolate Tz18 XX KW coat protein; complete genome; ORF1; ORF2a; ORF2b; ORF4; P1; protease; KW RNA-dependent RNA polymerase; VPg. XX OS Rice yellow mottle virus OC Viruses; Riboviria; Solemoviridae; Sobemovirus. XX RN [1] RP 1-4446 RA Fargette D.; RT ; RL Submitted (21-JAN-2005) to the INSDC. RL Fargette D., DGPC, IRD, BP64501, 34394 Montpellier cedex 5, FRANCE. XX RN [2] RX DOI; 10.1128/JVI.79.7.4407-4414.2005. RX PUBMED; 15767440. RA Hebrard E., Pinel-Galzi A., Catherinot V., Labesse G., Brugidou C., RA Fargette D.; RT "Internal point mutations of the capsid modify the serotype of Rice yellow RT mottle virus"; RL J. Virol. 79(7):4407-4414(2005). XX DR MD5; 2b38c09b8a9de6a26318f3d0b648517a. DR EuropePMC; PMC1061534; 15767440. DR EuropePMC; PMC3791421; 23830075. DR RFAM; RF01838; sobemo_FSE. XX FH Key Location/Qualifiers FH FT source 1..4446 FT /organism="Rice yellow mottle virus" FT /isolate="Tz18" FT /mol_type="genomic RNA" FT /country="Tanzania" FT /db_xref="taxon:31744" FT CDS 81..554 FT /product="P1" FT /note="ORF1" FT /db_xref="InterPro:IPR021971" FT /db_xref="UniProtKB/TrEMBL:Q5CB58" FT /protein_id="CAI46308.1" FT /translation="MTRLEVLIRPTEQTVAKANAVGYTHTLTWVWHSQTWDVDSVNDPV FT LRADFDPNRSGWVAVSFACTQCTAHYYTCEQVKFFTNIPPIHYDVVCADCERRVQQDDE FT IDREHQERNAEISACNARALSEGKPASLVYLSRDACDIPEHSGTCRYDKYLNF" FT CDS 608..2425 FT /product="protease and VPg" FT /note="ORF2a" FT /db_xref="GOA:Q5CB57" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:Q5CB57" FT /protein_id="CAI46309.1" FT /translation="MGSSVVGRFLTRTKETTRVDSNLLIVLAGLIAAAIVSERLPVTAS FT LWAIPSAIIANWIVLSAHESFSRFVEGVEIEPLSTLRYGKVQSAPRFDPSRGYVVDVSY FT NGHVIPVILDFTTTTALSVPQRVNPGVSMEASRGGLPPTSVKLEDVPPSVVVLYHDSVR FT LGLGTRVRTPTGRDLLMTNHHIAALEPNGIAYKGHLKKVVLDAPVIACDHPHIDCAFYE FT VPPKIWSLLGVKSASLKPLVKQTAVSLFGGSSSTDFSSCVGIAQIGDNPFLIRHQSTTC FT SGWSGSPLYHKGCVVGLHIGAADGYNVASNVAWYFHTFKKEVVVESPFEIYGKFREANS FT EEYDESLRHGVQYAEYDFSGDTIRASSNTWVREREKYHAEERRKSGQLSWADRFGDDSG FT EDVDIETSHPVAPSISKTRRKRSKRVEQFVDAVSECSFSFESAHEGIIPETSAYDHVPL FT NCQGAGSSLRASPPLDGLFNSESTTGTPLATPSLPTECLSATLENRVSSLENMLGKVSA FT QLSKTQSQYSQILKDLAGLRGEVKQSLTPSSSKPAGSTERYVPPGSRKQSNHSKKSTQK FT SPQGDASGTSGGSTTSSMKSRESSAKPAK" FT CDS 2092..3603 FT /product="RNA-dependent RNA polymerase" FT /note="ORF2b" FT /note="ORF2b produced by a -1 frameshift in ORF2a, FT translation occurs as an ORF2a-ORF2b fusion protein" FT /db_xref="GOA:Q5CB56" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q5CB56" FT /protein_id="CAI46310.1" FT /translation="MPFSYVGKSGVVFGEHAGKSVCAAVKDAITVFPDLEGFGWPERGS FT KAELDSLILQAGRFNRTVCPSGLAEAVQSLQEKYPKVPPRRCLRDEWRFDDIFDEVERI FT LCETGEVNSASSPGVPLAGLANSNGEVRKLGRDLVCLAVVERLNALASVDPRQHNWTPR FT ELVEKGLCDPVRLFVKNEPHPQKKLRERRFRLISSVSLVDQLVERMLFGPQNNTEISTW FT WQWPSKPGMGLLTREQIRLVWDDVFQKHQAHPAAEADISGFDWSVQDWELWSDLAIRIN FT RGSFSGNLRKAAISRYYCFMNSVFQLSDGTLIQQELPGLMKSGSYCTSSTNSRIRCLMA FT ELIGSPWCIAMGDDSVEGWIEGAQSKYALLGHTCKEYYPCKTRGRELLEFNFCSHLIRK FT GHAELTSWPKALFRFLSSKHEDFEDLWVELHTCGVWSRIEQYLRGIGRVSHKDGQEGQE FT NQLQPKSARQEEPPPSWAVGGTPASKGSSGSGLPDIWDGSWTTIF" FT CDS 3446..4165 FT /product="coat protein" FT /note="ORF4" FT /db_xref="GOA:Q5CB55" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q5CB55" FT /protein_id="CAI46311.1" FT /translation="MARKGKKTNSNQNQQGKKSRRPRGRSAEPRLQRAPVAQASRISGT FT VPGPLSSNVWPINRSVEFLMDFKRSATSTEATILNCVPFNLPRVWSLARCYSLWKPTRW FT DVVYLPEISAAAAGSIEMCYLYDYADTVPSDTGKMSRTAGFVTSSVWYGAEGCHLLTGG FT SARNAVVASMDCSRVDWKRVTSSIPSGVDPNVVNTILPARLAVRSSIKPAVDDTPGKLY FT AIVSMVLRDPVDPTLNT" XX SQ Sequence 4446 BP; 991 A; 1152 C; 1270 G; 1033 T; 0 other; acaattgaag ctaggaaagg agcatattgc gaaagcgatc cctccttccg ccgaacaatt 60 gtagccacgc tgcatcgtgt atgacacggt tggaagttct tatacgaccg acagagcaga 120 ctgtggcaaa agccaacgcc gtgggctata cgcacacact cacctgggtt tggcattctc 180 agacctggga cgttgactct gtgaacgatc ctgttctcag agccgatttc gaccctaaca 240 ggtcgggttg ggtggctgtg tcgtttgcct gtactcagtg cacggctcac tactatacgt 300 gtgagcaggt gaagttcttc accaacatcc cgccgattca ctacgacgtg gtgtgtgctg 360 attgcgagcg acgtgttcag caggacgacg agatcgaccg tgaacaccaa gagcggaacg 420 cagagatttc tgcctgcaac gctcgagctt tgagtgaggg gaagccagca agtctggtat 480 acctctctcg agacgcttgc gatatacctg agcactccgg aacgtgccgg tacgacaagt 540 acctcaactt ttgagggcgt cagtctgccg acatccaagg aacggtcttg gttcagacta 600 acacgggatg ggctcttctg ttgttggtcg ctttctcact cgcaccaagg aaacgacgag 660 ggtggattcc aacctcctca tcgtcttggc tgggttgata gcggccgcga tagtctcaga 720 gcgtctaccc gtgacggcgt cattgtgggc aatcccctca gctatcatag caaactggat 780 cgtgctgtca gctcacgaga gcttcagccg gttcgtggag ggggttgaga ttgagccctt 840 gtcaacactt cggtatggca aggttcaatc tgccccaagg tttgatccct cccggggtta 900 cgtggtcgat gtgtcttaca acggccatgt gatccctgtg atattagact tcaccacgac 960 cacggcttta tcggttcccc aaagagtaaa ccctggggtc tcgatggagg cgagtcgtgg 1020 agggctccca ccgacgtccg tcaaactcga agatgtgccg ccgagcgttg tggtcttgta 1080 ccacgactcc gtcaggctag gcctgggaac tagggtgcga actcccacag gtcgtgatct 1140 cctcatgacc aatcaccata tcgctgctct ggaacccaat gggattgcgt ataagggcca 1200 ccttaagaaa gtggtgctgg acgcgccagt catcgcgtgt gaccatccac acatagactg 1260 cgcgttttac gaggtccctc ccaagatttg gtctctcttg ggggttaagt ctgccagtct 1320 gaaacccctg gttaaacaga ctgcggtgtc gctcttcggt ggctcgtcat ctactgactt 1380 ctcaagctgt gttgggatag cccagattgg ggacaatccg ttcctgataa ggcatcaaag 1440 cacaacctgc agtggatggt cgggctcccc gctctaccac aaaggttgcg tggttggtct 1500 acatataggt gctgcggatg gttataatgt ggcgtctaat gtagcctggt acttccatac 1560 cttcaagaag gaagtggtcg tagagtctcc ctttgagatt tacggcaaat tccgggaggc 1620 taactccgag gagtatgacg agagtctgcg acacggagta caatatgcgg agtacgactt 1680 ctctggtgat accatccggg cgtcttccaa cacctgggtg cgtgagagag agaagtacca 1740 cgctgaggaa cgtcgtaagt ccggccagct cagctgggca gatcgttttg gtgacgacag 1800 tggcgaggat gttgatatcg agacatcgca tcccgtagca ccgtcaatat ctaagacgcg 1860 gcggaaacgg tcaaagcgcg ttgagcagtt cgtcgacgcg gtttccgaat gttctttctc 1920 gttcgagtca gctcacgaag gaataattcc ggagacctct gcttatgacc acgttccttt 1980 aaactgccag ggggcgggct cgagcctacg ggcgagtccg cccttggacg gcttattcaa 2040 ctcggagagt accactggga ctcccttggc gactccctcc cttccgacgg aatgcctttc 2100 agctacgttg gaaaatcggg tgtcgtcttt ggagaacatg ctgggaaaag tgtctgcgca 2160 gctgtcaaag acgcaatcac agtattccca gatcttgaag gatttggctg gcctgagagg 2220 ggaagtaaag cagagcttga ctccctcatc ctccaagccg gccggttcaa cagaacggta 2280 tgtccctccg ggctcgcgga agcagtccaa tcactccaag aaaagtaccc aaaagtcccc 2340 ccaaggcgat gcctcaggga cgagtggagg ttcgacgaca tcttcgatga agtcgagaga 2400 atcctctgcg aaaccggcga agtgaattcc gcttcctcgc cgggggtacc gcttgcgggc 2460 ctcgccaatt ccaatggtga ggttcggaag ttagggagag atttggtgtg tttagctgtg 2520 gtagagcgac tgaatgcctt agcctcggtt gacccccgcc agcataactg gacacccagg 2580 gagctggtag agaagggtct ttgtgaccct gtgcgcttgt tcgttaagaa cgagccacac 2640 ccacagaaga aattgcgtga acgtcgattc aggctgattt cctctgtttc tctagttgac 2700 cagctggtgg agcggatgct tttcgggcct cagaacaaca ccgagatctc aacttggtgg 2760 cagtggccct cgaagccggg catgggtctg ttgacccgtg aacaaatccg tttggtgtgg 2820 gatgatgtat tccagaaaca ccaagcccac cctgcggctg aggcagacat atcggggttt 2880 gactggtccg tccaggactg ggagttgtgg tcagacctcg cgatccgaat taacagaggg 2940 agtttctccg gaaacctcag gaaagcggct attagtcgtt actactgttt catgaactct 3000 gttttccagc tctcagatgg aaccctcatt cagcaggagt tgcccggact catgaagtct 3060 ggttcgtact gcacctcctc cacgaattca cgcatacgct gtctcatggc tgagctcatc 3120 ggctcgccgt ggtgtatagc tatgggtgat gattcagtgg aggggtggat tgagggggcc 3180 caatccaagt acgccctgct aggtcatacc tgtaaggagt actacccatg taagactaga 3240 ggccgtgagc ttctggaatt caatttctgt tcacatttga tcaggaaggg tcatgctgag 3300 ctaacttcgt ggccgaaggc gttgtttcgc tttctgtcta gcaagcatga ggattttgaa 3360 gatctgtggg ttgagctgca cacgtgcggg gtgtggagca ggatcgaaca atatctgcgt 3420 gggatagggc gtgtctccca caaagatggc caggaagggc aagaaaacca actccaacca 3480 aaatcagcaa ggcaagaaga gccgccgccc tcgtgggcgg tcggcggaac cccggcttca 3540 aagggctcca gtggctcagg cctcccggat atctgggacg gttcctggac cactatcttc 3600 taatgtctgg ccgattaacc gctccgtgga attcttgatg gatttcaagc ggagcgccac 3660 ctcgacagag gcgaccatac ttaattgtgt gccgttcaat ctgcctcgag tgtggagtct 3720 tgcacgttgc tactccttgt ggaagccaac aaggtgggac gtcgtctatc tccctgagat 3780 tagcgcggca gcagctggaa gtatcgagat gtgttatctc tacgactacg ctgacacagt 3840 cccaagtgac acgggcaaga tgagcaggac agcgggcttc gtcacctcca gcgtttggta 3900 cggcgcggag ggctgccatt tgttaactgg cggctcagca cgaaatgccg tggttgcctc 3960 gatggattgt tcccgagtcg actggaaacg cgttactagt tcaatcccta gtggcgtgga 4020 tcccaacgtt gtaaacacca tactgccagc taggctagct gtgcggtcgt cgattaaacc 4080 ggcggttgat gatacaccag gtaaactgta cgctatcgtc agtatggtcc tgcgggaccc 4140 agttgatcca acactcaata cgtgaactgg gtccagtgga gataggtatt ggcaccagtg 4200 atggccaacg gattagctca gagatcgact accctgaaaa ggatgttgag cgtttgcgaa 4260 cgcgggcttg atcctaagag gacatactgg cgtctatccc acgtgaggag ttgcactcac 4320 gtcaacccaa agcaacccag gcactggata gtgcttaccc agccggtttc ggagctgctg 4380 ggaggacctt ttcacactcc gaattcccca cgtcttccga gagaattctc gggatgggtg 4440 ggggag 4446 //