ID AJ717545; SV 1; circular; genomic DNA; STD; VRL; 2801 BP. XX AC AJ717545; XX DT 09-MAR-2006 (Rel. 87, Created) DT 14-SEP-2006 (Rel. 89, Last updated, Version 3) XX DE East African cassava mosaic virus segment DNA A, complete sequence, isolate DE EACMV-[K9] XX KW AC1 gene; AC1 protein; AC2 gene; AC2 protein; AC3 gene; AC3 protein; KW AC4 gene; AC4 protein; AV1 gene; AV1 protein; AV2 gene; AV2 protein. XX OS East African cassava mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2801 RA Bull S.E.; RT ; RL Submitted (19-MAY-2004) to the INSDC. RL Bull S.E., Department of Disease & Stress Biology, John Innes Centre, RL Colney Lane, Norwich, Norfolk, NR4 7UH, UNITED KINGDOM. XX RN [2] RA Bull S.E.; RT "Diversity of cassava-infecting geminiviruses in Kenya"; RL Thesis (2005), MSc (Research), University of East Anglia, Norwich, UK. XX RN [3] RX DOI; 10.1099/vir.0.82013-0. RX PUBMED; 16963765. RA Bull S.E., Briddon R.W., Sserubombwe W.S., Ngugi K., Markham P.G., RA Stanley J.; RT "Genetic diversity and phylogeography of cassava mosaic viruses in Kenya"; RL J. Gen. Virol. 87(Pt 10):3053-3065(2006). XX DR MD5; f1d907f443bf09991eabd08cefa442b6. XX FH Key Location/Qualifiers FH FT source 1..2801 FT /organism="East African cassava mosaic virus" FT /segment="DNA A" FT /host="Manihot esculenta" FT /isolate="EACMV-[K9]" FT /mol_type="genomic DNA" FT /country="Kenya:Kilifi, Mwezangombe" FT /clone="K9AFA-3[2001]" FT /db_xref="taxon:62079" FT CDS 174..530 FT /codon_start=1 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="GOA:Q2A8V6" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q2A8V6" FT /protein_id="CAJ78112.1" FT /translation="MWDPLLNDFPETVHGFRAMLAVKYLLHLEQKYDRGTVGAEYIRDL FT IGVLRCKSYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS FT EAQDVQNVSKPRRP" FT CDS 334..1107 FT /codon_start=1 FT /gene="AV1" FT /product="AV1 protein" FT /db_xref="GOA:Q2A8V5" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q2A8V5" FT /protein_id="CAJ78113.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGMVRCVSDVTRGPGITHR FT VGKRFCVKSIYILGKIWMDENIKKQNHTNHVMFFLVRDRRPYGPSPQDFGQVFNMFDNE FT PTTATVKNDLRDRYQVLRKFYATVVGGPSGMKEQALVKRFFRINNHVVYNHQEQAKYEN FT HTENALLLYMACTHALNPVYATLKIRIYFYDAVTN" FT CDS complement(1104..1508) FT /codon_start=1 FT /gene="AC3" FT /product="AC3 protein" FT /db_xref="GOA:Q2A8V4" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q2A8V4" FT /protein_id="CAJ78114.1" FT /translation="MDSRTGELITAPQAMNGVFTWEITNPLYFAITDHDKRPGNMNHDI FT ITLQIRFNHNIRKALGIHKCFLNFKVWTTLRPPTGLFLRVFRYQVLKYLDMIGVISINT FT VLHAVAHVLYDVLLNTLQVTEHHAIKFNLY" FT CDS complement(1249..1656) FT /codon_start=1 FT /gene="AC2" FT /product="AC2 protein" FT /db_xref="GOA:Q2A8V3" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q2A8V3" FT /protein_id="CAJ78115.1" FT /translation="MPPSSPSTSHCSQVPIKVQHRTAKTRAVRRRRVDLECGCSFYLHI FT DCINHGFSHRGTHHCASSNEWRFYLGNNKSPLFRNHRPRQEAREHEPRHHHTPDTVQPQ FT HPEGIGDSQVFSQLQGLDDLTASDWSFLKSI" FT CDS complement(1565..2644) FT /codon_start=1 FT /gene="AC1" FT /product="AC1 protein" FT /db_xref="GOA:Q2A8V2" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q2A8V2" FT /protein_id="CAJ78116.1" FT /translation="MPRAGRFQINAKNYFITYPRCSLTKEETLSQLKAFSYPTNIKFIR FT VCRELHQDGVPHLHVLIQFEGKFQCTNPRFFDLISPSRSTHFHPNIQGAKSSSDVKAYI FT EKGGEFLDDGIFQVDARSARGEGQHLAQVYADALNASSKSEALQIIKEKDPKSFFLQFH FT NISANADRIFQAPPQTYVSPFLSSSFTQVTEEIEVWVSENICSPAARPWRPISIVLEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKIYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLDEERNRSLKAWALKNATFITLHEPL FT FSSSHQSPTPHSEDQGRQT" FT CDS complement(2254..2487) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q2A8U5" FT /protein_id="CAJ78117.1" FT /translation="MGCLISMFSSNSKASSNVPTPDSSISFPHPDQHISIRTFRELNRR FT PMSRLTLKREGNFLTMEFSKSMPEVPGGRASI" XX SQ Sequence 2801 BP; 726 A; 556 C; 736 G; 783 T; 0 other; accggatggc cgcgcccgaa aaagcatgtg gatcccacgg gatggccgcg cccgtgaaag 60 aacgtggtcc ccgcgcacgt gttttggtcg gccagtcata ttcacgcgtg aaagtctaga 120 tatttgtggt ttgtctttat agacttcgtc gcgaagtagt ggagcgcgtc aacatgtggg 180 atccattgtt gaacgatttt cccgaaaccg ttcacggttt ccgtgctatg cttgctgtta 240 aatacctgtt acatcttgaa cagaaatacg atcgcggtac tgtcggggct gagtatatac 300 gggatctaat aggggttcta cggtgtaaga gttatgtcga agcgaccagg agatataata 360 atctcaacac ccgtatccaa ggtgcggagg aggctgaact tcgacagccc atacacgaac 420 cgtgttgttg cccccactgt ccgcgtcacc agaagcaaaa tatgggccaa caggcccatg 480 tatcggaagc ccaagatgta cagaatgtat cgaagcccag acgtccctaa gggctgtgaa 540 ggcccatgta aggttcagtc ctatgaacag agggatgatg ttaagcacac tggtatggtt 600 cgatgtgtca gtgatgttac ccgtgggcca ggcattaccc atagagtcgg gaagaggttt 660 tgtgtgaagt ccatatatat attgggcaag atctggatgg atgagaatat caagaagcaa 720 aatcatacga accatgttat gttcttcctg gttcgagata gaaggcctta tgggccgagc 780 cctcaagatt ttggacaagt gttcaacatg tttgataatg aacctactac ggcaactgtg 840 aagaatgatc ttagggaccg gtatcaggtg ttacgtaaat tctatgcgac tgttgttggt 900 ggaccctctg gcatgaagga acaagcgctg gttaagaggt tttttaggat caataatcat 960 gttgtgtata atcatcagga acaggccaag tatgagaatc atacggagaa tgcgttgtta 1020 ttgtatatgg catgtacaca tgccttgaat cctgtgtacg ctacgctgaa aatacgcatc 1080 tatttctatg atgcagtgac aaattaataa aggttgaatt ttattgcatg gtgctccgta 1140 acttggagtg tgtttagtaa tacatcgtac agaacatgag caacagcgtg aagtacagtg 1200 ttaatggaaa taacgccaat catatctaaa tatttgagca cttgatatct aaatactctt 1260 aagaaaagac cagtcggagg ccgtaaggtc gtccagacct tgaagttgag aaaacacttg 1320 tgaatcccca atgccttccg gatgttgtgg ttgaaccgta tctggagtgt gatgatgtcg 1380 tggttcatgt tccctggcct cttgtcgtgg tcggtgattg cgaaatagag gggatttgtt 1440 atttcccagg taaaaacgcc attcattgct tgaggcgcag tgatgagttc ccctgtgcga 1500 gaatccatgg ttgatgcagt cgatatgtag atagaacgag cagccgcatt cgaggtctac 1560 ccgcctacgt ctgacggccc tggtcttcgc tgtgcggtgt tggactttga tgggaacttg 1620 agaacaatgg ctcgtggagg gtgatgaagg tggcattctt taaagcccag gctttaaggg 1680 accgattcct ttcctcgtcc agaaactctt tatatgatga tgttggtcct ggattgcaga 1740 ggaagatagt gggaatgccg cctttaattt gaattggctt cccgtacttt gtattgcttt 1800 gccagtccct ttgggccccc atgaattctt tgaagtgttt gaggtagtgg gggtcgacgt 1860 catcaatgac gttgtaccag gcgtcgtttg aatatatctt tggagacaga tccaggtgtc 1920 cacataaata attatgtggg ccgagggaac gagcccacat ggtcttcccg gttcggctat 1980 caccttctag aacaatactg atcggtctcc atggccgcgc agcgggactg catatatttt 2040 cggataccca tacttctatt tcctctgtga cttgtgtaaa tgaggatgat aagaacggac 2100 taacgtaagt ttggggcgga gcctggaaga ttctatctgc gttagcagat atgttatgga 2160 actgtaaaaa aaaggacttg ggatcttttt ctttgataat ttgaagagct tctgatttag 2220 aagaagcatt caacgcgtct gcatatacct gagctaaatg ctggccctcc cccctggcac 2280 ttcgggcatc gacttggaaa attccatcgt caagaaattc ccctcccttt tcaatgtaag 2340 ccttgacatc ggacgacgat ttagctccct gaatgttcgg atggaaatgt gttgatcggg 2400 atggggaaat gagatcgaag aatctggggt tggtacattg gaacttgcct tcgaattgga 2460 tgagaacatg gagatgaggc accccatcct gatgtagttc tctgcaaacc ctaatgaatt 2520 tgatattcgt cgggtaagaa aaggctttta attgggaaag ggtctcttcc tttgttaagg 2580 agcatcgggg ataggtgatg aaataatttt tggcatttat ttgaaaacga ccggctcttg 2640 gcatatttgc tgtcgttttg gatcggggga cactcaaaac tccaggggaa cggtggaatg 2700 gggggcatta tataggatgt cccccaatgg catatgtgta aataggtaga gttccattca 2760 aaatttgaat tgcgactatt ggcggccatc cgattaatat t 2801 //