ID AJ621357; SV 1; linear; genomic RNA; STD; VRL; 7034 BP. XX AC AJ621357; XX DT 19-JUL-2004 (Rel. 80, Created) DT 04-NOV-2004 (Rel. 81, Last updated, Version 2) XX DE Cherry rasp leaf virus partial mRNA for putative protease cofactor (Pro-Co DE gene), helicase (hel gene), genome-linked viral protein (pVPg gene), DE protease (pro gene) & RNA-dependent RNA polymeras (RdRp gene), RNA1 XX KW genome-linked viral protein; hel gene; helicase; pro gene; Pro-Co gene; KW protease; protease cofactor; RdRp gene; RNA-dependent RNA polymeras; KW VPg gene. XX OS Cherry rasp leaf virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Cheravirus. XX RN [1] RP 1-7034 RA Thompson J.R.; RT ; RL Submitted (19-JAN-2004) to the INSDC. RL Thompson J.R., Plant Pathology, Cornell University, Bradfield 202, Plant RL Pathology, Cornell University, NY, 14850, USA. XX RN [2] RX DOI; 10.1007/s00705-004-0362-3. RX PUBMED; 15503203. RA Thompson J.R., Perry K., De Jong W.; RT "A new potato virus in a new lineage of picorna-like viruses"; RL Arch. Virol. 149(11):2141-2154(2004). XX DR MD5; 1bdd49003e2a400c9b44558b91f2e66f. DR EuropePMC; PMC2861173; 20229114. XX FH Key Location/Qualifiers FH FT source 1..7034 FT /organism="Cherry rasp leaf virus" FT /isolate="potato" FT /mol_type="genomic RNA" FT /country="USA" FT /db_xref="taxon:202566" FT CDS 140..6892 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:Q6EWG9" FT /db_xref="InterPro:IPR000199" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/Swiss-Prot:Q6EWG9" FT /protein_id="CAF21713.1" FT /translation="MGIFTLCSCGVPCPTRSFYRRHMASGCDLLPTRQQLADVGYTEPT FT VIAEVVTPPTQAPLELFVEISPPVLAPFEPSVEISLPIQAPAEPIVEASPPAATQFVGI FT EALIASGPCFFGSFGPFEEYYSSPVGPLTRFDTLRREGHCAARARVAAVAAKAVIVQQT FT LSETAAAMRATLPLWMKGQVAPPVKSKRALKREAKAKAKADYLASDEAYYKATDGLTAL FT PPGVSRDVHMRQLDAMEVAYLAHVGDVAARGFQRRQVLRAAYKARCEKRAFKRFLEEVD FT FLCLPVHIVDKIQTPFDGEQAAAPEMQKGMVYATSRRQVKTRRSFSSFLPKEDFSFTLG FT VCPARSPTVTPSSTPSTSRSSSPEPRVSSPSGVLPEKAACIGFCSHGSECTEHFCFGYL FT NLKSEALASQYLAWLLQTKLPGGISCFELEVSSYLEQCQDTMEAIDLWWHAMDRYCFNF FT KSSKYVILDNFLCKHSIAKDQTPREFLAKHRIAKAKALHRVPSRKEKMQALCEQRADKA FT WDAYIELNKNCKVGEGPLEYLKAAKDRCVEFFSPFTKYCNEAIRSLNPLVAILGPFKDG FT FWTCFNNLREKCLKMVNDHWLAFAAGTTLVLSLIFLLCIICLVKIFSILIANLGLGVVA FT ITTLVTALVVGFFLFNGMLEQAADLQLCSLVASDFLNFLAQNQGSALVAGTMASVQDDL FT RGQGVSWCFSALYKLISRVVPVGIKETSILFNSIGNVSRSANHSKDFFLNMKEMACSWM FT DALSDAMALISDDSVSAMQVLKHLCEHDFLDWAKKVERYAGETYDSLIISPAERLKILR FT ILADQQESFQKAFYNPRIASKAPRLMLTEFNRLSTLLRDAHNALSRASLFDRQRTPPFW FT VHLYSENGGTGKSMAMMPLGNHMLDAIGEPKTCRFVTRNVASKFLNGYQHQPCFLMDEF FT GAAPKQDYSDEVTMLDLVSPNALTLNMAAIGEKNTMFTSKLIISTANRRLAHPDVKLGA FT NLDGFLRRRNILAEVVLVSGKPHFHEFNLLAPRTEQKVYLNRAMQESQVPDPLTPQEFY FT SLCTENFVNFLNQQSSTVAMSAGLNYVRSSDFSHLKDFLLFKIGLDFEENEVERIVTDY FT GNSLKNETIFPPEHEQIFQKWKDALDSLTLPELVSLLDKSVSETFVYTLISENHPNVVM FT SSLTPYECMIYAICKKKYREGTEAKLPFPEGETTSYGASFLSFVAQVALCIPKWALFCV FT ALCAVLLVGYLIIKFAIFLFSGVVTLLGALAFSNLSGDGAEDSPSFDTNRKRGGVKFEY FT STKWDASSTNRFAESYSENGTIPAGTSWADFFGEGPEEEPSQSLLNLLKHQVVLIAEPT FT KVVYNCIALGGRNFLITKHVWDLMPACNYGLYGYAVAKDRIFISPRIRPCAQLKGRDLV FT IVQLPDSVPPFTSLPRDIFLENMAKAPKTANACLVVAKPLFERRSVAKLEQTIYPFKQL FT PQVHSKDTYSCGSLGSKQMPACYSYVFETYAGLCTSPLIAQEGGRCIILGLHVVGDRSK FT MGYAQIVTLDDFSDVALSDKVGQGPEEMYIPTKNSECFGSVTKLGAWTGPKPYFLEKTS FT LIPSLISTSIDVERTTEPAILSQRDKRLKDSINPEFDVFLEGMKKYAVEAHSLDEDLEV FT FEDALDRVFLEIPEHACEDLTNDQVCNGIEDDPYAEGIVMQTAEGFPFCTQRPAGASGK FT SWLFAGAPGDWHIVPGSLLANEMHKKEVAPSRGLFEPLIGIDFPKDEKVDSSKVYIKPK FT TRLFTILPVDYNILVRKYFLSSVSHIMTQHNTIPVKVGIDCLSNEWSILYHQLRSKGTN FT WFNGDYSRFDGITPRNVLQGIVKRINKFYNNKNSLAITDSNLSINSDLARSLLTDMAST FT RYGLTNGDLWYVTSGIPSGFPLTVIVNSLVNNFFIHFSYIKLMKREELNSLYPLHSFRQ FT MVAYATYGDDNLVSVNDVITEKFNLVKIADLLAEHGVTLKNGADKNEEILSPFYPLEKV FT DFLKRKFVHYQGHVVAPLNPVNITERLHWIRKGLGEADATLENCSSAAFEALFHGRCYY FT DTLVAKIYKACAASKLSIQLPTYNDALAIFLSNDSFAKAIQTISLDLPKAIFVNKSNYF FT VSEIFPDVFFCSNERNVTLHKLLEITTTRNICYISRNYESRNSSRGLFSLKGEGWALAP FT VSARLVVYKNMQKPVYFVDEANDGLALAYCLDYMLRIKGVSRSRLAQVLYNIFGHDETL FT CSRIASNFSLLDSNKYMPPHKK" FT mat_peptide 140..2230 FT /gene="Pro-Co" FT /product="putative protease cofactor" FT mat_peptide 2231..3928 FT /gene="hel" FT /product="helicase" FT mat_peptide 3929..4093 FT /gene="Vpg" FT /product="genome-linked viral protein" FT mat_peptide 4094..4768 FT /gene="pro" FT /product="protease" FT mat_peptide 4769..6889 FT /gene="RdRp" FT /product="RNA-dependent RNA polymerase" XX SQ Sequence 7034 BP; 1755 A; 1455 C; 1594 G; 2230 T; 0 other; cgttttagag cttggcaatt gttgttatct gttgttgttg ttgtttgtta tcactcattg 60 cgatccttca gtcactttgt tgtcattctc taccgtcaaa ctttatttta cttcaaaact 120 ttccattttg aagtttctta tgggtatttt taccctttgc tcttgtgggg ttccttgccc 180 cacacgttct ttctatcgga ggcatatggc ctctggttgt gatctgctgc ctaccaggca 240 gcaacttgct gatgttggct acactgagcc aacagttatt gctgaggtgg taaccccacc 300 cactcaggct cctcttgagc tttttgtgga gatctctcca cctgtcttgg ctccttttga 360 gccttcggtg gagatctctc tgcccattca ggctccagct gagcctattg tggaggcctc 420 tccacctgct gccacacagt ttgtgggtat tgaggcactt attgcctctg gcccttgctt 480 cttcgggagc tttgggccct ttgaggagta ttactcctcc ccagtgggtc ctttgacccg 540 ctttgatacc ctccgccgtg agggtcactg tgcagcccga gctagggttg ccgctgttgc 600 tgccaaggca gtaatagttc agcagactct tagtgagact gctgccgcca tgagggctac 660 cctgcctttg tggatgaagg ggcaagtagc cccgcccgtc aaatccaaac gcgcactaaa 720 gcgtgaagct aaggccaagg ccaaggctga ttacttggcc tcagatgagg cctactataa 780 ggctactgat ggccttactg ctcttccccc tggtgtttcc agggatgtcc atatgcgtca 840 actggacgct atggaggttg cttaccttgc ccatgtgggt gatgttgcag cccgcggctt 900 tcaacgtcgc caggttttgc gagccgccta taaggctcgg tgtgagaagc gcgctttcaa 960 gcgtttcttg gaggaagttg atttcctctg tctcccagtt cacatagtgg acaaaatcca 1020 aacccctttc gatggggaac aggctgctgc acctgaaatg cagaagggga tggtttatgc 1080 cacttcccgg cggcaggtga aaacccgccg ctccttctcc tctttcctcc ctaaggagga 1140 tttctctttt actttgggcg tttgccctgc gaggtcacct acggtgaccc caagttccac 1200 cccctccact tctcggagtt cctctccaga accccgggtt tcttcccctt ctggggtgct 1260 gcctgaaaag gcagcatgta taggtttctg ctctcatggg agcgaatgta cagaacattt 1320 ttgttttggt tatttgaacc ttaagagtga ggcccttgct tcacaatatc ttgcctggct 1380 cttacaaaca aaattgcctg gaggtatttc atgctttgag cttgaggtct cttcctattt 1440 agagcagtgc caagatacca tggaagccat cgacttatgg tggcatgcca tggatagata 1500 ttgttttaat tttaagagta gtaaatatgt cattttagat aatttccttt gcaaacattc 1560 tattgcaaaa gaccagactc caagagagtt tttggccaag cataggatag caaaagcaaa 1620 ggctttgcac agagttccct cgcgtaaaga gaaaatgcaa gctttgtgtg agcaaagggc 1680 tgataaggcc tgggatgctt atattgagct taataaaaac tgtaaagtag gcgagggacc 1740 tttagagtac ctgaaggctg ccaaggatag gtgtgtggag ttcttttctc cattcacaaa 1800 gtattgtaat gaggccattc gatcactcaa ccccctggtt gccattctgg gacctttcaa 1860 ggatggtttt tggacttgtt tcaacaacct ccgcgaaaag tgtctcaaaa tggtcaatga 1920 tcattggcta gcatttgcag caggtactac tttagtactt tctttaattt ttcttctgtg 1980 tataatttgt ttagtcaaaa ttttttccat tttaatagca aacctagggc taggtgttgt 2040 tgctataaca acactcgtta cagctctagt tgtagggttt ttccttttta acgggatgct 2100 tgagcaggct gcagatttgc aactatgctc tcttgttgcc tcggattttt tgaatttcct 2160 agcgcagaac cagggttccg ctttagttgc tggaaccatg gcatctgtgc aggatgacct 2220 gagaggacag ggtgtctcct ggtgcttctc tgctctgtat aaactaatta gcagagtagt 2280 gccagtgggc ataaaagaaa ctagcattct ttttaactct ataggtaatg ttagtcgtag 2340 tgctaatcat tctaaggatt ttttcctaaa tatgaaggaa atggcctgct cctggatgga 2400 tgctctctct gatgctatgg cactcatatc tgatgattct gtatcagcta tgcaagtgct 2460 taagcatctt tgtgagcatg acttcctgga ctgggctaag aaggttgagc gatatgctgg 2520 ggagacttat gatagtttga tcattagtcc agcagagcga ctcaaaatcc ttagaatatt 2580 agctgaccaa caagaaagct ttcagaaagc tttctataac cctaggatag ctagtaaggc 2640 accacggctt atgcttactg agttcaatcg tttgtcgacg ttactgaggg atgctcataa 2700 tgctttatct agagcatctc tttttgaccg acaacgaact ccacctttct gggtgcattt 2760 gtactcagaa aatggaggaa ctggtaagtc catggctatg atgcctttag gaaatcacat 2820 gttagatgct attggggaac ctaaaacctg caggtttgtt actaggaatg tagcctccaa 2880 atttttgaat ggctaccaac accaaccttg ttttttgatg gacgagtttg gtgctgcccc 2940 aaagcaggac tatagcgatg aagtgactat gcttgattta gtttccccaa atgctctgac 3000 attaaatatg gcggccattg gggagaagaa tactatgttc acttcaaagc ttattatttc 3060 cacagctaac cgtagattag cacaccccga tgtcaagttg ggagctaact tagatggatt 3120 cttgcggcgg aggaatatcc ttgcagaggt tgttcttgtg agtggtaaac cccattttca 3180 tgagttcaat ctactggcgc ctcgtacgga gcagaaggtt tacttaaacc gcgccatgca 3240 ggaaagccag gttcctgacc ctctaacgcc gcaagagttc tattctttat gtacagaaaa 3300 ctttgttaat tttttaaacc agcagagtag tacagttgcc atgtctgctg gtcttaatta 3360 tgtgcgctcc tctgacttct ctcacctcaa ggacttccta ttgttcaaaa tagggctgga 3420 ctttgaggag aatgaagttg agaggattgt cactgactat ggcaattcct taaagaatga 3480 gactattttt cctccagagc atgaacagat tttccaaaag tggaaagatg ctctggatag 3540 tctcactctt cctgagttag tttctttatt agataagtcg gtttcagaga cttttgtata 3600 taccttgatc tctgaaaacc atcctaacgt agttatgagt agtctaactc cttacgaatg 3660 catgatttat gctatttgta agaaaaagta tagagaagga acagaggcaa agcttccgtt 3720 tcctgaagga gagaccacaa gttatggtgc ctcctttctt tcatttgttg cccaagtagc 3780 tttgtgtata cccaaatggg cacttttttg tgtagcttta tgtgcagttt tacttgtagg 3840 atatttaatt attaaatttg ctatttttct ttttagtggg gttgtcacct tgctgggtgc 3900 tttagctttc agcaatttga gtggagatgg cgctgaggat tcaccatcat ttgacaccaa 3960 ccgtaaacgc ggaggtgtta aatttgaata cagcaccaag tgggatgcct caagtaccaa 4020 ccgttttgca gagagttatt ctgaaaatgg caccatccca gctggaactt cttgggcaga 4080 cttctttgga gaaggacctg aggaggaacc tagtcagtct ctacttaact tgcttaagca 4140 ccaagtggtt ctgatagctg aacccactaa agttgtgtat aattgtatag cgctaggtgg 4200 taggaatttt ttaataacaa aacatgtttg ggacctcatg ccagcttgta actatggatt 4260 gtatggctat gcggttgcca aagatagaat ttttattagt cctaggatta gaccatgtgc 4320 acaactgaaa gggcgggacc tagttattgt acagttacct gactcagttc cgccctttac 4380 ttcgttacct agggatatct tccttgaaaa catggctaag gctcccaaga cagctaacgc 4440 ttgtcttgtc gtagctaaac ctttgtttga aaggcgatca gttgctaagc ttgaacagac 4500 aatttaccca ttcaagcaac tgccacaagt gcattcgaaa gacacatact cttgtggatc 4560 gttaggttcg aaacagatgc cagcatgtta ttcatacgtt tttgaaactt atgctggttt 4620 gtgcacatcc cccttgattg cacaagaagg gggtagatgt attatattag gtttacatgt 4680 tgtaggagat agatctaaga tggggtatgc acagatagtt acccttgatg attttagtga 4740 tgttgctctc agtgataagg ttggtcaagg tccggaggaa atgtatatac ctacaaaaaa 4800 ctctgagtgc tttggatccg ttaccaagtt gggagcttgg actggtccca agccttattt 4860 tcttgagaag acatcactaa taccatctct tatttctaca agtatagatg tggaaagaac 4920 taccgaacct gccatcctct cccagcgaga caaacgactt aaggacagta taaatcctga 4980 gtttgatgtc ttcctcgagg ggatgaaaaa atatgcagtg gaggctcact cgctggacga 5040 agatctggag gtgtttgagg acgccctaga tcgagtcttt ttagagattc ctgagcatgc 5100 ttgtgaagat ctaactaatg atcaagtgtg caatgggatt gaggatgatc cctacgctga 5160 aggcattgtc atgcaaactg ctgagggttt tcccttttgc acccagcgtc cagctggtgc 5220 tagtggaaaa tcttggctgt ttgctggtgc tcctggtgat tggcatatcg ttcctggctc 5280 tttgttagca aacgaaatgc acaagaagga ggttgctcct agcaggggct tgttcgagcc 5340 tttgattggt attgactttc ccaaggatga gaaggtagat tcgtctaaag tgtatataaa 5400 acctaagacg cgtctgttca ccatccttcc tgtagattat aatattttag ttagaaaata 5460 ttttctttcc tctgtgtcgc atattatgac acaacacaat actattcctg taaaggtagg 5520 tatagactgt ttatctaatg agtggtccat actttaccac caattgcgtt ccaaagggac 5580 aaattggttt aatggtgatt attcccgttt cgatgggatt acgcccagga atgttttgca 5640 gggtattgtg aaacgaataa ataaatttta taataacaag aattctttag ccataacgga 5700 ttctaatctt tctattaact ccgatcttgc gagatctttg ttaacggata tggctagcac 5760 tcggtatggc ctaactaatg gggatctatg gtatgtcaca agtggtattc cttcgggatt 5820 ccctctgact gtcatagtta actcccttgt gaataatttt tttattcatt ttagttatat 5880 caagttgatg aagagggagg agttgaattc actttaccca cttcatagtt tccgtcagat 5940 ggtagcttat gctacctacg gtgatgacaa cttggtttct gtaaatgatg taattacaga 6000 aaagtttaat ttagttaaaa ttgctgactt gcttgccgaa catggcgtga cccttaaaaa 6060 tggggctgat aaaaatgaag agattttatc cccattttat cctttggaaa aggttgattt 6120 tctcaaacgc aagtttgtgc attatcaagg gcatgttgtg gcacctctca atcctgtaaa 6180 tataactgag aggttgcatt ggattagaaa gggtcttggg gaagcagatg ctactcttga 6240 aaattgtagt tctgctgcct ttgaggctct tttccacggt aggtgttatt atgatacctt 6300 ggtagcgaag atttataagg cgtgtgcagc ttcaaagttg tctatacagc tgcccactta 6360 taatgatgcg ttagccattt ttctttctaa tgattctttt gccaaggcga tccagactat 6420 ttctctggat ttgccgaagg ctatttttgt aaataaaagt aattattttg tttctgaaat 6480 ttttcccgac gttttctttt gctccaacga aaggaacgtc accttacata agttgctgga 6540 gattacaacc acacgcaata tttgctatat ctccagaaac tacgagagcc gaaacagctc 6600 acgaggcttg ttctcactga aaggtgaggg ttgggctcta gctcctgttt cagctcgctt 6660 agttgtatat aaaaatatgc aaaagcctgt ttactttgtc gatgaggcaa atgatggact 6720 tgctcttgcg tattgtttag actatatgct tagaataaaa ggagtctctc ggtctcgttt 6780 ggctcaagtg ttgtacaaca tttttgggca tgatgagact ctgtgctcca gaatcgcttc 6840 taatttcagt cttttggact caaataagta tatgccacca cataagaagt gagttctctt 6900 gttccttttt ctagtctgta aatactcgtt ttagctttcc tagtgtaagc tcctgtttag 6960 caggtcgtgc cttcagcaag cacaccaaaa agatttgctt tttcttgagt ctttagagtc 7020 ttttggaggg atcc 7034 //