ID AJ620187; SV 1; circular; genomic DNA; STD; VRL; 2740 BP. XX AC AJ620187; XX DT 08-JAN-2004 (Rel. 78, Created) DT 06-DEC-2006 (Rel. 90, Last updated, Version 2) XX DE Tomato leaf curl New Delhi virus - [Pakistan:Solanum:1997] segment A, DE complete sequence XX KW C1 gene; C2 gene; C3 gene; C4 gene; coat protein; complete genome; KW replication enhancer protein; replication-associated protein; KW transciptional activator protein; V1 gene; V2 gene. XX OS Tomato leaf curl New Delhi virus [Pakistan:Solanum:1997] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2740 RA Briddon R.W.; RT ; RL Submitted (04-JAN-2004) to the INSDC. RL Briddon R.W., Department of Disease and Stress Biology, John Innes Centre, RL Colney Lane, Norwich, NR4 7UH, UNITED KINGDOM. XX RN [2] RA Briddon R.W.; RT "Diversity of begomoviruses in Pakistan"; RL Unpublished. XX DR MD5; 3680d83e875be1aba2ebaf489bab6c7e. DR EuropePMC; PMC3125359; 21676270. DR EuropePMC; PMC5691616; 28934148. XX CC Related entry AJ620188 XX FH Key Location/Qualifiers FH FT source 1..2740 FT /organism="Tomato leaf curl New Delhi virus FT [Pakistan:Solanum:1997]" FT /segment="A" FT /host="Solanum nigrum:leaf" FT /mol_type="genomic DNA" FT /country="Pakistan" FT /clone="H47-7" FT /db_xref="taxon:407834" FT CDS 121..459 FT /transl_table=1 FT /gene="V2" FT /product="V2 protein" FT /db_xref="GOA:Q705I9" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q705I9" FT /protein_id="CAF04467.1" FT /translation="MWDPLLHEFPESVHGLRCMLAVKYLQEIEKNYSPDTVGYDLVRDL FT ILVLRAKNYGEATSRYHHFNARIESTPTSQLRQPLWSSCSCPHCPRHKSKGLDQQADEQ FT KTQNVQNV" FT CDS 281..1051 FT /transl_table=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:Q705I8" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q705I8" FT /protein_id="CAF04468.1" FT /translation="MAKRPADIIISTPASKVRRRLNFDSPYGARAVVPIARVTKAKAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVYHIGKLMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGAPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGTYASKEQALVRKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT CDS complement(1048..1458) FT /transl_table=1 FT /gene="C3" FT /product="replication enhancer protein" FT /function="enhances DNA replication" FT /db_xref="GOA:Q705I7" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q705I7" FT /protein_id="CAF04469.1" FT /translation="MITDSRTGEYITADRAKNGVYTWEIRNPLYFKILQHDSRPFLTQH FT DIIKIQIQFNHNLRKALGLHKCFLTFKIWTGLRPQIGIFLRVFKTQVLKYLDMLGVIGI FT YNVIRAVYHVLDNVMERTIDVWTSYYIKLDIY" FT CDS complement(1178..1597) FT /transl_table=1 FT /gene="C2" FT /product="transciptional activator protein" FT /function="activates virion strand transcription" FT /db_xref="GOA:Q705I6" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q705I6" FT /protein_id="CAF04470.1" FT /translation="MQSSSHSKNHSIPVAKTSLPQKKKKSIRRRRVDLPCGCSYYISIN FT CHDHGFTHRGIHHCGSSKEWRIYLGNSKSPVFQNFATRQQALPNTARHHQDSNTIQPQP FT AESPGTSQVFSNFQNLDGLTPSDWDFLESLQNPGP" FT CDS complement(1500..2585) FT /transl_table=1 FT /gene="C1" FT /product="replication-associated protein" FT /function="initiation of virion strand DNA replication" FT /db_xref="GOA:Q705I5" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q705I5" FT /protein_id="CAF04471.1" FT /translation="MASPRRFRVNAKNYFLTYPKCSLTKEEALSQLQTLETPTKKKFIK FT ICRELHEDGSPHIHVLIQFEGKFQCKNNRFFDLVSPSRSAHFHPNIQGAKSASDVKKYI FT DKDGDVLEWGVFQIDGRSARGGQQTANDAYAQAINTGNKDDALKVLKELAPKDYVLQFH FT NLNTNLDRIFQPPSEVYVSPFSISSFDRVPADLVDWVSSNVVCAAARPFRPISIVIEGD FT SRTGKTMWARCLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRNW FT QSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLDEEKNAALKQWAIKNAVFITLEEPL FT YSGRENIAPSEEEEEHSQEAS" FT CDS complement(2252..2428) FT /transl_table=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q705I4" FT /protein_id="CAF04472.1" FT /translation="MGLRISMFSSNSKGNSNAKITDSSTWFPQVGQHISIRTFRELNQR FT QTSKNTSTKTETF" XX SQ Sequence 2740 BP; 753 A; 577 C; 615 G; 795 T; 0 other; accgaatggc cgcgcaaatt ttttaggtgg gccctcaacc aatgaaattc acgctacatg 60 gcctatttag tgcgtgggga ccaataaata gacttgctca ccaagtttgg atccacaaac 120 atgtgggatc cattattgca cgaatttcca gaaagcgttc atggtctaag gtgcatgcta 180 gctgtaaaat atctccaaga gatagaaaag aactattcac cagacacagt cggctacgat 240 cttgtccgag atctcattct tgttcttcgg gcaaagaact atggcgaagc gaccagcaga 300 tatcatcatt tcaacgcccg catcgaaagt acgccgacgt ctcaacttcg acagccccta 360 tggagctcgt gcagttgtcc ccattgcccg cgtcacaaaa gcaaaggcct ggaccaacag 420 gccgatgaac agaaaaccca gaatgtacag aatgtataga agtcccgacg tgccaagggg 480 ctgtgaaggc ccttgtaagg tgcagtcctt tgaatccagg cacgatgtct atcatattgg 540 caaactcatg tgtgttagtg atgttacccg aggaaccgga ctcacacatc gcgtaggcaa 600 gcgattctgt gtgaaatctg tctatgtgct gggaaagata tggatggatg aaaacatcaa 660 gacaaaaaac catactaaca gtgtaatgtt ttttttggtt cgtgaccgtc gtcctacagg 720 agctccccag gatttcgggg aagtgtttaa tatgtttgac aatgaaccga gcacagcaac 780 ggtgaagaac atgcatcgtg atcgttatca agtcttacgg aagtggcatg cgactgtgac 840 gggaggaaca tatgcatcta aggagcaagc attagttagg aagtttgtta gggttaataa 900 ttatgttgtt tataatcaac aagaggccgg caagtatgag aatcatactg aaaatgcatt 960 aatgttgtat atggcctgta ctcacgcatc aaatcctgta tatgcaactt tgaaaatccg 1020 gatctatttc tatgattcgg tcacaaatta ataaatatcg agctttatat aatatgaagt 1080 ccatacatca atagttcgct ccattacatt atccaataca tgataaactg ctcttattac 1140 attatatatt cctatgacac ctaacatatc caggtactta aggacctggg ttttgaagac 1200 tctcaagaaa atcccaatct gagggcgtaa gcccgtccag attttgaaag ttagaaaaca 1260 cttgtgaagt cccagggctt tccgcaggtt gtggttgaat tgtatttgaa tcttgatgat 1320 gtcgtgctgt gttaggaagg gcctgctgtc gtgttgcaaa attttgaaat acaggggatt 1380 tcgaatttcc caggtatata cgccattctt tgctcgatcc gcagtgatgt attcccctgt 1440 gcgtgaatcc gtgatcatgg cagttgatcg agatataata ggaacaacca cacggcagat 1500 caactcgcct cctgcgaatg ctcttcttct tcttctgagg gagcgatgtt ttcgcgaccg 1560 gaatagagtg gttcttcgag tgtgatgaag actgcattct tgattgccca ctgcttcagt 1620 gctgcatttt tttcttcgtc cagatattcc ttatagctgc tatttggacc tttattgcac 1680 aggaagatag tgggaattcc acctttaatc atgactggct ttccgtactt cgtgttgctt 1740 tgccagttac gctgggcccc catgaattct ttaaaatgct ttagatagtg gggatcaacg 1800 tcgtcaatga cgttgtacca ggcatcattg ctatacactt ttgggctcag atcaagatgt 1860 ccacacaagt aattgtgggg tcctaagcaa cgagcccaca ttgttttgcc agttctacta 1920 tcaccctcta tgactatgct tatgggccta aaaggccgcg cagcggcaca cacaacattg 1980 gacgagaccc aatcgacgag gtctgccgga actctgtcga aggatgaaat tgaaaatgga 2040 gaaacataaa cctcggaagg aggttgaaaa atgcgatcta aattggtatt taaattgtga 2100 aactgcagaa cgtaatcctt tggggctaat tcctttaata ctttcaaagc atcgtcttta 2160 tttcccgtgt taatcgcctg ggcatatgca tcgttcgccg tttgttgacc accacgggca 2220 gatcgtccat cgatctggaa aacaccccat tctagaacgt ctccgtcttt gtcgatgtat 2280 tttttgacgt ctgacgctga tttagctccc tgaatgttcg gatggaaatg tgctgaccga 2340 cttggggaaa ccaagtcgaa gaatctgtta tttttgcatt ggaatttccc ttcgaattgg 2400 atgagaacat ggatatgcgg agacccatct tcgtgaagct ctctacagat cttgatgaat 2460 ttcttcttcg tcggggtttc tagggtttgc aattgggaaa gtgcctcttc tttagttaga 2520 gagcactttg gatatgtgag gaaatagttt ttggcattta ctctaaaacg acgtggcgaa 2580 gccataaaac ttgtcgtttt gattcggcgt ccctcaactt atctatgtaa ttggtgtctg 2640 gagtcctata tataggtaag acaccatatg gcattattgt aattttgaaa agaaaattac 2700 tttaattcaa attccctaaa gcggccattc gtataatatt 2740 //