ID AJ608214; SV 1; linear; genomic RNA; STD; VRL; 4453 BP. XX AC AJ608214; XX DT 17-MAR-2004 (Rel. 79, Created) DT 17-MAR-2004 (Rel. 79, Last updated, Version 1) XX DE Rice yellow mottle virus complete genome, isolate SL4 XX KW coat protein; complete genome; ORF1; ORF2a; ORF2b; ORF4; P1; protease; KW RNA-dependent RNA polymerase; VPg. XX OS Rice yellow mottle virus OC Viruses; Riboviria; Solemoviridae; Sobemovirus. XX RN [1] RP 1-4453 RA Fargette D.; RT ; RL Submitted (18-NOV-2003) to the INSDC. RL Fargette D., Dgpc, Ird, BP 64501, 34394 Montpellier cedex 5, FRANCE. XX RN [2] RX DOI; 10.1128/JVI.78.7.3252-3261.2004. RX PUBMED; 15016846. RA Fargette D., Pinel A., Abubakar Z., Traore O., Brugidou C., Fatogoma S., RA Hebrard E., Choisy M., Sere Y., Fauquet C., Konate G.; RT "Inferring the evolutionary history of rice yellow mottle virus from RT genomic, phylogenetic, and phylogeographic studies"; RL J. Virol. 78(7):3252-3261(2004). XX DR MD5; b3f36d0893ae1c5899920aa852ca0dc1. DR EuropePMC; PMC1061534; 15767440. DR EuropePMC; PMC371063; 15016846. DR EuropePMC; PMC3791421; 23830075. DR RFAM; RF01838; sobemo_FSE. XX FH Key Location/Qualifiers FH FT source 1..4453 FT /organism="Rice yellow mottle virus" FT /isolate="SL4" FT /mol_type="genomic RNA" FT /country="Sierra Leone" FT /db_xref="taxon:31744" FT CDS 83..556 FT /product="P1" FT /function="possible roles in suppression of FT post-transcriptional gene silencing and viral movement" FT /note="ORF1" FT /db_xref="InterPro:IPR021971" FT /db_xref="UniProtKB/TrEMBL:Q709I4" FT /protein_id="CAE81323.1" FT /translation="MPRLEVLIRPTQQTVAKAITAGYTHALTWVWHSQTWDVDAVNDPV FT LSADFNPAKVGWVSVSFACTRCTAHYYTSEQVKCFVNIPSVHYDVVCADCERSVQQDDQ FT IDREHDERNAEISACNARALSEGRPASLVYLSRDACDIPEHSGTCRFDKYLNF" FT CDS 611..2428 FT /product="protease and VPg" FT /note="ORF2a" FT /db_xref="GOA:Q709I3" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:Q709I3" FT /protein_id="CAE81324.1" FT /translation="MGSSVVGRFLTRTKEATRVDSNLLIVLAGLIAAAIVSERLPVTAL FT LWAIPSAIIANWTVLSAHESFSRFVEGVEIEPMSTLRYGKVQSAPRFDPSRGYVVDVSY FT NGHVIPVILDFTTTTALSVPQRVNPGVSMEASRGGLPPTSVKLEDVPPSVVVLYHDSVR FT LGLGTRVRTPTGRDLLMTNHHIAALEPNGIAYKGHLKKVALDAPVIACDHPHIDCAFYE FT VPPKIWSLLGVKSASLKPLVKQTAVSLFGGSSSTDFSSCVGIAQIGDNPFLIRHQSTTC FT SGWSGSPLYHKGCVVGLHIGAADGYNVASNVAWYFHTFKKEVVAESPFEIYGKFREANS FT EEYDESLRHGVEYAEYDFSGDTIRASSNTWVRERTKYHAEERRKSGQLSWADRFGDDSG FT EDVDIETSHPVAPSISKARRKRSKRVEQFVDAVSECSFSFESAHEGVVPETSAYDHVPL FT NCQGAGSSLRASPPLDGLYNSENTAGTPLATPSLPTGCPSATLENRVSSLENMLGKVSA FT QLSKTQSQYSQILKDLAGLRGEVKQSLTPSSSKPAGSTERYVPPGSRKQSNHSKKGTQK FT SPPGDASGTSGGSTTSSTKSKESSAKPAK" FT CDS <2095..3609 FT /product="RNA-dependent RNA polymerase" FT /note="ORF2b" FT /note="ORF2b produced by a -1 frameshift in ORF2a, FT translation occurs as an ORF2a-ORF2b fusion protein" FT /db_xref="GOA:Q709I2" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q709I2" FT /protein_id="CAE81325.1" FT /translation="MPFSYVGESGVVFGEHAGKSVCAAVKDAISVFPDLEGFGWPERGS FT KAELDSLILQAGRFNRTVCPSGLAQAVQSLQERYPKVPPRRCLRDEWRFDDIFDEVERI FT FCETGEVNSASSPGVPLAGLANSNGEVRGLARDLVCLAVVERLNALASVDPRQHNWTPR FT ELVEKGLCDPVRLFVKNEPHPRKKLLERRFRLISSVSLVDQLVERMLFGPQNNTEISTW FT WQWPSKPGMGLLTPEQIRLVWDDVFQKHQAHPAAEADISGFDWSVQDWELWSDLAIRIN FT RGNFQGNLRRAAISRYYCFMNSVFQLSDGTLIQQELPGLMKSGSYCTSSTNSRIRCLMA FT ELIGSPWCIAMGDDSVEGWIEGAQSKYAALGHTCKEYYPCKTRGRELLEFNFCSHLIRR FT GHAELTSWPKALFRFLSSKHEDFEDLWVELHTCGVWSRIERYLRGIGRVSHKDGQEGQE FT NQLQPGAARKEEEPAPTWAFGGASASTGSGGSGLPDIWDGSWSTIF" FT CDS 3449..4168 FT /product="coat protein" FT /note="ORF4" FT /db_xref="GOA:Q709I1" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q709I1" FT /protein_id="CAE81326.1" FT /translation="MARKGKKINSNQGQQGKKKSRRPRGRSAEPQLQRAPVAQASRISG FT TVPGPLSSKTWPLHSVEFLADFKRSATSADATTYNCVPFNLPRVWSLARCYSMWKPTRW FT DVVYLPEVSAATAGSIEMCYLYDYADTIPSDTGKMSRTAGFVTSSVWYGAEGCHLLSGG FT SARNAVVASMDCSRVGWTRVTSSIPSKADPNVVNTMLPARLAVRSSVKPTVDDMPGKLY FT AIVSMVLRDPVDPTLNT" XX SQ Sequence 4453 BP; 970 A; 1166 C; 1285 G; 1032 T; 0 other; acaattgaag ctaggaaagg agcatattgc gaaagcgatc cctccttccg ccgaacaatt 60 gtagccactt tctgcgtcgt gcatgccacg gttggaagtt cttatacgac cgactcagca 120 gactgtggca aaagccatta ccgcgggcta tacgcacgca ctcacctggg tttggcattc 180 tcagacctgg gacgttgacg cagtgaacga tccagttctc agcgccgact tcaaccccgc 240 gaaggttggt tgggtgtcag tgtcgtttgc ctgtactcgg tgtacagctc attactatac 300 gagtgagcag gtgaagtgtt ttgtcaacat cccatctgtc cactacgacg tggtgtgtgc 360 tgattgcgag cgcagtgttc agcaggacga ccagatcgac cgcgagcacg acgagcgtaa 420 cgcagagatt tctgcctgca acgctcgggc cctgagtgag ggtagaccag caagtttggt 480 ttatctttca cgggacgctt gtgacatacc cgagcactcc ggaacgtgcc ggtttgacaa 540 atacctcaac ttttgaggga atcagtcctg ccgacatcca aggagcggtc ttggctcaga 600 ctgacacggg atgggctctt ctgttgttgg tcgctttctc actcgcacca aggaagcgac 660 gagggtggac tccaacctcc tcatcgtctt ggctgggttg atagcggccg cgatagtctc 720 agagcgtctg cccgtgacgg cgttattgtg ggcaatcccc tcagctatca tagcaaactg 780 gaccgtgctg tcagctcacg agagcttcag ccggttcgtt gagggggttg agattgagcc 840 catgtccaca cttcggtatg gcaaggttca atctgctccc aggttcgatc cctcccgggg 900 ttacgtggtc gacgtgtctt acaatggcca tgtgattccg gtgatattgg acttcaccac 960 gacgacagct ctgtcggttc cccaaagagt aaatcctggg gtctcgatgg aggcaagtcg 1020 tggggggctc ccgccgacgt ccgtcaaact cgaagatgtg ccgccgagcg ttgtggtctt 1080 gtaccacgac tccgtcaggc taggcctggg aaccagggtg cgaaccccga caggtcgtga 1140 tctcctcatg accaatcacc atatcgctgc cctagaaccc aatggtatcg cgtacaaggg 1200 tcaccttaag aaagtggctc tggatgcgcc agtcatcgca tgtgaccatc cacacataga 1260 ctgcgcattt tacgaggtgc ctcccaagat ttggtctctc ttgggggtca agtctgccag 1320 tttgaaacct ctggttaaac aaactgcggt gtcactcttc ggaggctcgt catccactga 1380 cttctcaagt tgtgttggga tcgcccagat tggggacaat ccgttcctga taaggcatca 1440 aagcacgact tgcagtgggt ggtcgggctc cccgctctac cacaaaggtt gcgtggttgg 1500 tctgcatata ggtgctgcgg atggttataa tgtggcatct aatgtggcct ggtactttca 1560 taccttcaag aaggaagtag tcgctgagtc tccatttgag atttacggca aattccgtga 1620 ggcaaactcc gaggagtacg acgagagtct acgacacgga gttgagtatg cagagtacga 1680 cttctctggt gacaccatcc gggcatcttc aaatacctgg gtgcgtgaga ggacgaagta 1740 ccacgctgag gaacgtcgta agtccggcca gcttagctgg gcagaccgct ttggtgacga 1800 cagtggcgag gatgttgata tcgagacatc acatcccgta gcaccgtcaa tatctaaggc 1860 gcggcggaaa cggtcaaagc gcgttgagca gttcgtcgac gcggtttcgg agtgctcctt 1920 ctcgttcgag tcagctcacg agggggtcgt gccagagacc tcagcttatg accacgttcc 1980 tttaaactgc cagggggcgg gctcgagcct tcgggcgagt ccgcccttgg acggcttata 2040 caactcggag aataccgctg ggactccctt ggcgactccc tcccttccga cgggatgccc 2100 ttcagctacg ttggagaatc gggtgtcgtc tttggagaac atgctgggaa aagtgtctgc 2160 gcagctgtca aagacgcaat ctcagtattc ccagatcttg aaggatttgg ctggcctgag 2220 aggggaagta aagcagagct tgactccctc atcctccaag ccggccggtt caacagaacg 2280 gtatgtccct ccgggctcgc gcaagcagtc caatcactcc aagaaaggta cccaaaagtc 2340 ccccccaggc gatgcctcag ggacgagtgg aggttcgacg acatcttcga cgaagtcgaa 2400 agaatcttct gcgaaaccgg cgaagtgaat tccgcttcct cgccgggggt accgcttgcg 2460 ggccttgcca attccaacgg tgaggttcgt gggctagcga gagatttggt atgtttagct 2520 gtggtagagc gcttgaatgc cttagcctcg gttgaccccc gccagcacaa ctggacaccc 2580 agggagctgg tagagaaagg tctttgtgac cccgtgcgct tgtttgtcaa gaacgagcca 2640 cacccacgga agaaattgct tgaacgtcga ttcaggctga tttcttctgt ttctctagtc 2700 gaccagctgg tggagcggat gcttttcggg ccacagaaca acaccgagat ttcaacttgg 2760 tggcagtggc cttcgaagcc gggcatgggt cttttgaccc ctgaacaaat ccgtttggtg 2820 tgggacgatg tgttccaaaa gcaccaggcc caccctgcgg ctgaggcaga catatcgggg 2880 tttgactggt ccgttcagga ctgggagttg tggtcagacc tcgcgatccg aataaacagg 2940 gggaatttcc agggaaacct caggagggcg gctatcagcc gttactactg ttttatgaac 3000 tctgttttcc aactctcaga tggaaccctc atccagcagg agttgcccgg attgatgaaa 3060 tccggctctt actgcacctc atctaccaac tcgcgcatac gctgtctaat ggctgagctc 3120 atcggttcgc catggtgtat agctatgggt gacgattcgg tggaggggtg gattgagggg 3180 gcccagtcca agtacgccgc gttgggtcac acctgcaagg agtactaccc atgtaagacc 3240 agagggcgcg agctcctgga attcaacttc tgttcacact tgatcaggag gggtcatgct 3300 gagcttactt catggccgaa ggcgttgttt cgctttctgt cgagcaagca tgaggacttt 3360 gaagatctgt gggttgagct tcacacgtgc ggggtgtgga gccggattga acgatatctg 3420 cgtgggatag ggcgagtctc ccacaaagat ggccaggaag ggcaagaaaa tcaactccaa 3480 ccaggggcag caaggaaaga agaagagccg gcgcccacgt gggcgttcgg cggagcctca 3540 gcttcaacgg gctccggtgg ctcaggcctc ccggatatct gggacggttc ctggtccact 3600 atcttctaaa acctggccgc tccactccgt ggaattccta gcggatttta agcggagtgc 3660 cacctcagca gacgcgacga catacaattg tgtgccgttt aatctgcctc gagtgtggag 3720 tcttgcacgt tgctactcca tgtggaagcc aacacggtgg gacgtcgttt accttcccga 3780 ggtgagcgcg gcgacagctg gaagtatcga gatgtgttat ctctacgact atgctgacac 3840 catcccaagt gacacgggca agatgagcag gacggcgggc ttcgtcacct ccagcgtttg 3900 gtacggcgcg gagggctgcc atttactgag tggcggctca gcacgaaatg ccgtggtcgc 3960 ctcgatggat tgttctcgag tcggctggac tcgcgttact agttccattc ctagtaaagc 4020 ggatcccaac gtcgtaaaca ccatgctgcc agctaggcta gctgtgcggt cgtcggttaa 4080 gccgacggtt gatgatatgc cggggaaact ctatgctatc gtcagtatgg tcctgcggga 4140 tccggttgat ccaacactca atacgtgaac cggatttcag tagagatagg tattggcatc 4200 agtgatgatc cacggattgg ctcagagatc gactaccctg aaaaggatgt tgagcgtttc 4260 tgaacgcgag ctcgatccta cgagatgata ctggtgacta tcctacgtta ggagttgcac 4320 tcacgccttc aacccaaagc aacccatgca ctggatagtg cttacccaga tggttttcgg 4380 agctactggg cggacttttc acaaaccgaa ttctccattc attccgagag aactctcggg 4440 atgggtgggg gag 4453 //