ID AJ580021; SV 1; linear; genomic RNA; STD; VRL; 1777 BP. XX AC AJ580021; XX DT 28-SEP-2006 (Rel. 89, Created) DT 20-FEB-2007 (Rel. 90, Last updated, Version 2) XX DE Amaranthus leaf mottle virus partial polyprotein gene for Nib-CP DE polyprotein, genomic RNA, isolate AL XX KW capsid protein; Nib-CP polyprotein; nuclear inclusion b protein. XX OS Amaranthus leaf mottle virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-1777 RA Segundo E.; RT ; RL Submitted (06-AUG-2003) to the INSDC. RL Segundo E., Unidad de Virologia, CIFA Almeria, El Ejido PO Box 91, Almeria, RL E-04700, SPAIN. XX RN [2] RX DOI; 10.1007/s10658-006-9064-x. RX AGRICOLA; IND43860969. RA Segundo E., Lesemann D.E., Martin G., Carmona M.P., Ruiz L., Cuadrado I.M., RA Velasco L., Janssen D.; RT "Amaranthus leaf mottle virus: 3'-end RNA sequence proves classification as RT distinct virus and reveals affinities within the genus Potyvirus"; RL Eur. J. Plant Pathol. 117(1):81-87(2007). XX DR MD5; f49f23a8bf1e06dd949bdb1c555e4b70. XX FH Key Location/Qualifiers FH FT source 1..1777 FT /organism="Amaranthus leaf mottle virus" FT /host="Amaranthus viridis" FT /isolate="AL" FT /mol_type="genomic RNA" FT /country="Spain" FT /db_xref="taxon:241651" FT CDS <1..1464 FT /codon_start=1 FT /transl_table=1 FT /product="Nib-CP polyprotein" FT /db_xref="GOA:Q08I82" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q08I82" FT /protein_id="CAE30467.1" FT /translation="STVVDNSLMVVLAMHYALVKENLPYDEVENFIKFYVNGDDLIIAV FT HPSKESVLDRLADHFSSLGLNYDFTSRTRDKSELWFMSHRGIEIEGMYVPKLEEERIVS FT ILQWDRATKPEYRLEAVCAAMIESWGYPCLTHQIRKFYSWLIEQQPFSELAAEGKAPYI FT AEMALRRLYLDRAAENSELQDFMKYFTDLDDDMECEQYEVHHQAGEEMDATQAGSNTQK FT PKKNAANPQQEDRGNGAGSSGSNQQIISDRDVNAATRGTHMVPRIKTITSKMNFPKANK FT KNALNLDHLLEYKPRQIDLANTRATQMQFDTWFNAVQAAYELEENQMPTVMNGLMVWCI FT ENGTSPNINGVWVMMDGEEQVEYPLKPVIENAKPTFRQIMAHFSDVAEAYIEMRNKTEP FT YMPRYGLVRNLRDMSLARYAFDFYEMTSRTSTRAREAHIQMKAAALKSSQSRLFGLDGG FT ISTQEENTERHTTEDVTHNMHTLLGVRNM" FT mat_peptide <1..618 FT /product="nuclear inclusion b protein" FT mat_peptide 619..1461 FT /product="capsid protein" FT 3'UTR 1465..1777 XX SQ Sequence 1777 BP; 557 A; 346 C; 412 G; 462 T; 0 other; tcaactgttg tggacaactc actcatggtt gtgctcgcca tgcattatgc gcttgtcaag 60 gaaaacttac catatgacga agtggagaac ttcataaagt tctacgtcaa tggagatgac 120 ttaataatcg cagtgcatcc gtcgaaggaa agtgtcctag acaggctcgc cgaccatttc 180 tctagtctcg gtctcaacta tgattttaca tctagaacaa gagacaagag tgaattgtgg 240 ttcatgtctc acagaggcat tgaaattgaa ggaatgtatg ttccaaagtt agaagaggaa 300 agaattgttt ccattttaca atgggacaga gcaactaagc cagagtatcg gctcgaagcg 360 gtttgtgccg caatgataga atcatggggt tatccttgtt taactcatca gattcgcaag 420 ttctactcat ggcttatcga acagcaacct ttctctgaat tagccgcaga aggaaaagca 480 ccatatattg ctgagatggc gttgcgccgc ctatacttag atcgagcagc tgaaaattca 540 gagttacaag attttatgaa gtacttcact gatctagacg acgacatgga atgtgaacaa 600 tatgaagtac atcatcaagc tggggaagaa atggatgcaa cgcaagcagg tagtaacaca 660 caaaaaccta agaaaaatgc tgcgaaccca cagcaagagg acagagggaa tggagcagga 720 agttcaggga gcaatcagca gatcatttct gatcgtgatg taaacgcagc tactagagga 780 actcatatgg ttccgagaat taagacaatt acttccaaaa tgaactttcc aaaagccaac 840 aagaagaatg ctctcaattt ggatcatttg ttagaatata aaccgcgcca aatcgattta 900 gccaacacga gagcaacgca gatgcaattt gacacctggt tcaatgccgt gcaggctgcg 960 tatgaactcg aagagaatca gatgccaaca gtgatgaacg gactaatggt ttggtgtatc 1020 gaaaatggaa cctcgccaaa cattaacggt gtatgggtta tgatggatgg ggaagaacaa 1080 gttgaatacc ctctaaaacc tgtcatcgag aatgcgaagc cgacctttag acaaataatg 1140 gcacatttct ccgatgtagc ggaagcgtat atagaaatgc gcaacaagac agaaccatat 1200 atgccacgat atggtttagt gaggaattta cgagatatga gtttggcgcg ctacgccttt 1260 gatttctatg aaatgacctc acgaacttca acaagagcgc gagaagcgca cattcagatg 1320 aaggcagctg cacttaaatc atcacaatca cggctgtttg gtttggatgg tggcatcagt 1380 acacaagagg aaaacacaga gaggcacacc accgaggatg tcacccataa catgcataca 1440 ttgcttgggg tcaggaacat gtgagtgttt gcctactggg atgaaaaata agtatatatc 1500 gtatgcaata tttactttgg cttttcctgt actactttta ctacgacttt gcaatgttta 1560 gtatttacga cgccaacttg aggtgaccac ttgattctgt catgtgggtg actcatgttt 1620 gtgtttctag caataggagg tggccagtag attccatcta ttgggtgact catatttctt 1680 tacttacttg ctttagttta tgtaaaagtt ttcgaataca tagcgagagt gatgttgcga 1740 ctctgtcgta gcagtggtcc aagctatcta ctagaag 1777 //