ID   AJ550379; SV 1; linear; genomic RNA; STD; VRL; 1722 BP.
XX
AC   AJ550379;
XX
DT   19-MAR-2003 (Rel. 75, Created)
DT   19-MAR-2003 (Rel. 75, Last updated, Version 1)
XX
DE   Cardamom mosaic virus partial gene for polyprotein genomic RNA
XX
KW   6K2; CI; polyprotein.
XX
OS   Cardamom mosaic virus
OC   Viruses; Riboviria; Potyviridae; Macluravirus.
XX
RN   [1]
RP   1-1722
RA   Usha R.;
RT   ;
RL   Submitted (18-MAR-2003) to the INSDC.
RL   Usha R., Plant Biotechnology, Madurai Kamaraj University, Palkalai Nagar,
RL   Madurai, Tamil Nadu-625021, INDIA.
XX
RN   [2]
RA   Jebasingh T., Jacob T., Usha R.;
RT   "Characterization of the NIa gene of the Indian isolate of cardamom mosaic
RT   virus";
RL   Unpublished.
XX
DR   MD5; a3603bad3399bce3caf399cdea5049b4.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1722
FT                   /organism="Cardamom mosaic virus"
FT                   /host="Elettaria cardamomum"
FT                   /isolate="Yeslur"
FT                   /mol_type="genomic RNA"
FT                   /country="India:Karnataka, Yeslur"
FT                   /note="infected cardamom leaves"
FT                   /db_xref="taxon:104637"
FT   CDS             <1..>1722
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="InterPro:IPR001650"
FT                   /db_xref="InterPro:IPR014001"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:Q80MX1"
FT                   /protein_id="CAD79434.1"
FT                   /translation="FASSTFQHEGKVQNGDMSIQVMTYGTAFFKAMSADTFIQQFDAVF
FT                   LDESHLITAHSLALESYLNRCVSIRKFYMSATPRNHVPTAAVVRRFQIFEHAQPEVSIE
FT                   AFISSIGKGDSLDALNYGEKVLIFLSGREQCNRAAVKTAATQYGIRAFSLHKENFQSNY
FT                   SKILDALAAPGRCYIYATNILETGVTLNVDVVVDFGYTNQPKLNLTERTLLLEKRRVTE
FT                   AERKQRVGRAGRLRDGHAIVLGKTCQAVEMVTPDVVFDAALLAFVYNLEIYVNAHLDCE
FT                   WLAAITREQARTMLNFRLSSLFHARFSQASNKDYQQWNRLDHYTLTNFCAENSQAFGEI
FT                   SHIRVPFITHDMLDFDLIEISKAVANYKPNMLTVFGSKPAKGISLVMKVDETNVFDTLR
FT                   VARLLKRDYENQILSKKTAISTQRESPISYLLSTRIVDDLTAKLTQQIQKAERNIKKLD
FT                   GFITNLEVYANAPSSGEATTIGQGDYEEIGRCMQLQMDGKLTRESMIESLQLEDIPNAS
FT                   LKDAILLGNKRSILALSFLACGAFAGLAWYLTWDDADGLNNGWNKKQRVTVHKEILE"
FT   mat_peptide     <1..1482
FT                   /product="CI"
FT   mat_peptide     1483..>1722
FT                   /product="putative 6K2"
XX
SQ   Sequence 1722 BP; 524 A; 351 C; 376 G; 471 T; 0 other;
     ttcgcaagtt ctacgtttca gcatgaaggc aaggtgcaga acggggacat gagtattcaa        60
     gttatgacat atggcacagc cttctttaaa gcaatgtcag ctgacacatt tatccaacaa       120
     tttgatgcag ttttccttga cgagtcccat cttattactg cgcatagtct cgccttggaa       180
     tcgtatttaa acagatgtgt ctcaatacga aaattttata tgtctgccac gccacgcaac       240
     cacgttccca cagccgcagt cgtcaggcgc ttccagattt ttgaacatgc ccagcctgaa       300
     gttagtatcg aagcttttat ttcatcgatt ggaaagggcg acagtctcga tgcactgaat       360
     tacggagaaa aagttcttat ctttttatct gggcgcgagc aatgcaatcg cgccgcagta       420
     aagacagctg cgacccagta tggaatacgt gctttttctt tacataagga aaactttcaa       480
     tcaaattatt ccaaaattct tgatgcttta gcagcccccg gaaggtgtta tatatatgcc       540
     acaaatattc tggaaactgg agtgactctt aacgtcgatg tcgttgtcga ttttggatac       600
     acaaaccagc caaagcttaa tctaactgag cgtacactgc tccttgagaa acgacgcgta       660
     acggaagctg agcggaagca aagagtcggt cgcgcagggc gtttacgtga tgggcatgcc       720
     attgttcttg gaaaaacatg ccaagctgtg gaaatggtga cgccagacgt tgtttttgac       780
     gcggcactct tagcttttgt ttataatctc gaaatttatg tcaatgcaca tctggattgc       840
     gaatggttgg ctgccataac gcgtgaacaa gcacggacaa tgctaaactt tcgtttgtca       900
     agtctttttc atgcgcgatt tagtcaggca agcaacaaag attatcaaca atggaacaga       960
     cttgaccact atactctcac aaacttttgt gctgaaaatt cacaagcatt tggggaaatt      1020
     agtcatattc gagttccttt cataactcat gacatgctgg attttgattt aattgagata      1080
     tctaaggctg ttgcgaacta caaaccaaat atgttgacag tctttggctc caaacctgca      1140
     aaaggaatta gtttagttat gaaagtggat gaaacaaacg tctttgatac gttgagagtt      1200
     gcacgtttgt taaaacgcga ttatgaaaat caaatattaa gtaagaaaac cgcaataagc      1260
     acacagcggg agtcaccaat ctcctatttg ctttccacaa ggattgtcga tgatttgaca      1320
     gccaaattaa cccagcagat acagaaggca gaacgtaaca taaagaagct ggatggcttc      1380
     atcacaaatc ttgaagtgta tgcaaatgca ccatcatcag gcgaagcaac aacaattggt      1440
     caaggtgatt acgaagagat aggtcggtgc atgcaattgc agatggatgg caagttaact      1500
     cgtgaaagca tgatagagag tcttcaactt gaagatatcc caaatgcgtc tctcaaagat      1560
     gccattctac tgggtaataa aagatcaatt cttgcgttgt cctttctagc atgtggtgct      1620
     ttcgcaggac tagcatggta tctgacatgg gatgatgccg acggtttaaa caatggctgg      1680
     aacaagaaac aacgagtcac tgtacacaaa gaaattcttg ag                         1722
//