ID   AJ409317; SV 1; linear; genomic RNA; STD; VRL; 1808 BP.
XX
AC   AJ409317;
XX
DT   05-FEB-2002 (Rel. 70, Created)
DT   05-FEB-2002 (Rel. 70, Last updated, Version 1)
XX
DE   Garlic latent virus genes for TGB2 protein, TGB3 protein, coat protein and
DE   nucleic-acid binding protein, isolate yn1: Yunnan., genomic RNA
XX
KW   coat protein; nucleic-acid binding protein; TGB2 protein; TGB3 protein.
XX
OS   Garlic latent virus
OC   Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus.
XX
RN   [1]
RP   1-1808
RA   Adams M.J.;
RT   ;
RL   Submitted (20-MAR-2001) to the INSDC.
RL   Adams M.J., Plant Pathology Department, IACR-Rothamsted, Harpenden, Herts
RL   AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RX   DOI; 10.1007/s705-002-8330-y.
RX   PUBMED; 11890533.
RA   Chen J., Chen J.P., Adams M.J.;
RT   "Characterisation of some carla- and potyviruses from bulb crops in China.
RT   Brief report";
RL   Arch. Virol. 147(2):419-428(2002).
XX
DR   MD5; b0603ac03336874816b78a90830a6bb9.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1808
FT                   /organism="Garlic latent virus"
FT                   /host="Allium sativum"
FT                   /isolate="yn1: Yunnan"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Yunnan"
FT                   /db_xref="taxon:12458"
FT   CDS             1..339
FT                   /product="TGB2 protein"
FT                   /db_xref="GOA:Q8UZ92"
FT                   /db_xref="InterPro:IPR001896"
FT                   /db_xref="UniProtKB/TrEMBL:Q8UZ92"
FT                   /protein_id="CAC84187.1"
FT                   /translation="MPLSPPPDHTRTFFAGAIGVCIALCLYTLTRSTLPHVGDNLHSLP
FT                   HGGCYQDGTKKIIYNSPARNFPSSNLLSNFTSPLCLLALIIGLICLSEKFRPSTRTRVT
FT                   CSCNHSSL"
FT   CDS             312..506
FT                   /product="TGB3 protein"
FT                   /db_xref="GOA:Q8UZ91"
FT                   /db_xref="InterPro:IPR003411"
FT                   /db_xref="UniProtKB/TrEMBL:Q8UZ91"
FT                   /protein_id="CAC84188.1"
FT                   /translation="MQLQPLIALIAGLLVTLLFCYILEGFKTDKCTVIITGESVKFLGC
FT                   DFTREFIDFAKQAKPFGSL"
FT   CDS             532..1425
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q8UZ90"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="InterPro:IPR013569"
FT                   /db_xref="UniProtKB/TrEMBL:Q8UZ90"
FT                   /protein_id="CAC84189.1"
FT                   /translation="MANEEEEISNVRNLPTRDPVTIPEHERSKAVNDVGVMEREGFEAV
FT                   LRRSENRFNKLKEKCMSELSSVNVTNCGWESGRPKAQLADSLKGDASNIFTRPSMDALL
FT                   VRNYAPESNNMATAEELAKISAKVQALGAPEECLAEVFWDICMYCTTAGSSPNVNPKGT
FT                   ISVGGKVVTRDMVVAVIKEYSTLRQVCRCYAPVVWNYMLLNEQPPANWDAKGFTENTKY
FT                   AAFDTFDAVTNKAAIQPLEGLIRAPTDAERIAFATHKKLALAKNSQNSRYANTSAEVTG
FT                   GFFGCFPKNNFRENRC"
FT   CDS             1419..1715
FT                   /product="nucleic-acid binding protein"
FT                   /db_xref="GOA:Q8UZ89"
FT                   /db_xref="InterPro:IPR002568"
FT                   /db_xref="UniProtKB/TrEMBL:Q8UZ89"
FT                   /protein_id="CAC84190.1"
FT                   /translation="MLIKQRTYRRLLRAIFKLHTNKNCVDVINIIVNKIVCGRAGASRY
FT                   AQARRAERIGRCPRCFRCSPGFYFTKNCDTKTCSTGISYNAKVKDFIVDGVTM"
XX
SQ   Sequence 1808 BP; 511 A; 399 C; 409 G; 489 T; 0 other;
     atgccactta gtcctccgcc tgatcataca agaaccttct ttgccggcgc tataggggtg        60
     tgcattgctc tttgcttgta tacactaact cgctctacgc taccccacgt aggggataat       120
     ttacatagtt tgccgcacgg cggttgttac caagacggca caaagaagat aatctacaac       180
     agtcctgcta ggaactttcc gagtagcaat ttgctgtcga atttcacttc gcctctgtgt       240
     ttgcttgctc taatcattgg gctaatttgc ttaagcgaga agttcagacc aagtacaaga       300
     acacgcgtca catgcagttg caaccactca tcgctctgat tgccggtctc ctagtaacgc       360
     tacttttctg ctatatcctt gaaggtttca aaactgacaa gtgcacagtc ataattaccg       420
     gagaatcggt taagttttta ggttgcgatt tcacgagaga gttcattgat ttcgctaaac       480
     aagcgaaacc gtttggttca ctttaggtat acagcgctag aaattgatat tatggctaac       540
     gaggaagaag aaatcagtaa cgtgcggaac ttgcctactc gtgatccagt gactatcccg       600
     gaacatgaac gtagtaaagc tgtgaatgac gttggggtca tggaacgcga aggttttgaa       660
     gctgtgcttc gcaggagcga aaaccgtttt aataaactga aagaaaaatg catgagtgag       720
     ttgtcgagcg tgaatgtcac gaattgcggg tgggaatcag gccggcctaa agctcagctg       780
     gcagacagtc ttaaagggga tgcatctaac atcttcaccc gaccctccat ggacgcactc       840
     cttgtgagga attacgcacc cgaaagtaac aacatggcta cggctgaaga attagcaaaa       900
     atttctgcca aagtccaagc tcttggcgcc cctgaggagt gcttagctga agtattctgg       960
     gacatatgca tgtattgcac caccgccggt agttctccta atgtgaatcc taaaggaacc      1020
     atttctgtag gtggcaaagt tgtgactaga gatatggtcg tggccgtaat caaagagtac      1080
     tccacgttgc ggcaagtttg ccgctgctac gcacctgtag tctggaatta catgttatta      1140
     aatgaacagc cccctgctaa ttgggatgcg aagggcttca cagagaatac caaatatgct      1200
     gcctttgata cttttgacgc cgtgacaaac aaagctgcaa tccaacctct cgagggtcta      1260
     attagagctc caactgatgc cgaacgcatt gcttttgcaa cacacaaaaa attggctctt      1320
     gctaaaaatt ctcaaaactc ccgctacgcg aacacgtctg ctgaagttac tggaggcttc      1380
     ttcggttgct ttcccaaaaa caatttccga gagaatcgat gttgatcaag caaagaactt      1440
     accgtagact actgcgtgct atatttaaat tacatactaa taagaattgt gtggatgtga      1500
     taaatattat cgtgaataag attgtgtgcg gacgcgcggg ggcttcacgt tatgctcaag      1560
     ctcgcagagc tgagcgcatc gggaggtgcc ctcgttgttt ccggtgctca cctggttttt      1620
     acttcactaa aaactgtgac accaaaactt gttccacagg cattagctat aatgcaaaag      1680
     tcaaggactt tatagttgat ggtgtaacaa tgtgaaaccc tactacaaac cttggcttgt      1740
     tgcccataaa acttaaataa tgcataagtg ggaacgtata aaataatttg tttttaaaat      1800
     attttcgc                                                               1808
//