ID AJ304396; SV 1; linear; genomic RNA; STD; VRL; 3039 BP. XX AC AJ304396; XX DT 06-JAN-2003 (Rel. 74, Created) DT 06-JAN-2003 (Rel. 74, Last updated, Version 1) XX DE Cucumber mosaic virus 2a gene for replicase and 2b gene for 2b protein, DE isolate IPO, genomic RNA 2 XX KW 2A gene; 2B gene; 2b protein; replicase. XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3039 RA Chen Y.K.; RT ; RL Submitted (21-NOV-2000) to the INSDC. RL Chen Y.K., Lab. of Virology, Dept. of Plant Sciences, Wageningen RL University, Binnenhaven 11, Wageningen, 6709 PD, NETHERLANDS. XX RN [2] RX DOI; 10.1128/JVI.76.8.4119-4124.2002. RX PUBMED; 11907253. RA Chen Y.K., Goldbach R., Prins M.; RT "Inter- and intramolecular recombinations in the cucumber mosaic virus RT genome related to adaptation to alstroemeria"; RL J. Virol. 76(8):4119-4124(2002). XX DR MD5; 3deeb35e21cc0d05dc71aa3327b3a3de. DR EuropePMC; PMC136112; 11907253. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..3039 FT /organism="Cucumber mosaic virus" FT /host="Alstroemeria" FT /lab_host="Nicotiana benthamiana" FT /strain="ALS" FT /isolate="IPO" FT /mol_type="genomic RNA" FT /db_xref="taxon:12305" FT CDS 93..2615 FT /gene="2a" FT /product="replicase" FT /db_xref="GOA:Q8AZL7" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q8AZL7" FT /protein_id="CAC80005.1" FT /translation="MTSPPPTFSFANLLNGSYGVDTPEEVERVRREQREDAEAALRNYK FT PLPTVDVSESVPRDEPIVSQTVTTAPVTSVVDAFVSFGAEDYLEMSPSELLSAFELMVK FT PLRIGEVLCPNFDRSLFISSVAMARTLLLAPLTSTRTLKRFEDLVAAIYLKTDFFLEDD FT GPQTDVSQSDVPGYIFEPGQHSSGFEPPPICAKCDLILYQCPCFDFNALRESCAEKTFS FT HDYVIEGLDGVIDNATLLSNLGPFLLPVHCSYSKTEDPDFVVDPSLARPTDRVDAHIVQ FT AVCDTTLPTHVNYDDSFHQVFVDSADYSIDMDHVRLRQSDLVAKIPDGGHMLPVLNTGS FT GHKRVGTTKEVLTAIKKRNADVPELGDSVNLSRLSKAVAERFRLSYMNVDALAKSNFVN FT VVGDFHAYMQKWQSSGLSYDDLPDLHAENLQFYDHMIKSDVKPVVTDTLNVDRPVPATI FT TFHKKTITSQFSPLFISLFERFQRCLRERIVLPVGKNSSLEMTVFSVFNKHCLEIDLSK FT FDKSQGEFHLMIQEHILNDLGCPAPVTKWWCDFHRFSYIKDKRAGVGMPISFQRRTGDA FT FTYFGNTIVTMAEFAWCYDTDQFDRLLFSGDDSLAFSKLPPVGDPSKFTTLFNMEAKVM FT EPAVPYICSKFLLSDEFGNTFSVPDPLREIQRLGTKKIPYSDNNDFLFAHFMSFVDRLK FT FMDRMSQSCIDQLSIFFELKYKKSGNEAAQVLGAFKKYTANFNAYKELYYSDRQQCDLV FT NTFCISEFQVIRRTTVKKKKNGCVDSSGVDRRPPPSPFAGGETSKTKVSRQKPASEGLQ FT KSQRESAIYSEIFPDVTIPRSRSRGLVS" FT CDS 2413..2715 FT /gene="2b" FT /product="2b protein" FT /db_xref="InterPro:IPR004946" FT /db_xref="UniProtKB/TrEMBL:Q8QHS9" FT /protein_id="CAC80006.1" FT /translation="MDVLTVVVSTADLHLAHLQEVKRRRRRSHVRNRRARGYKSPSERA FT RSIARFFQMLPFHGVDPVDWFPDVVRSPSVTSLVSYESFDDTDWFAGNEWAEGSF" XX SQ Sequence 3039 BP; 725 A; 696 C; 680 G; 938 T; 0 other; gtttattctc aagagcgtat ggttcaatcc ctgcctcctc tgtgaaatta ccctagtttt 60 attgatctac ttctagtctc ttttctgtta ctatgacaag tcctccaccc actttctcat 120 tcgccaatct gttgaatggc tcctatggtg ttgacactcc cgaggaagtg gaacgcgtta 180 gacgtgaaca acgcgaagat gctgaggcgg ctttacgtaa ttataagcct ttacccactg 240 tggatgtcag tgagagtgtc cctagagacg aacctattgt ctcgcaaacc gtcactacag 300 ctcctgttac atcagtcgtt gacgcgtttg tttcttttgg tgctgaggac taccttgaaa 360 tgtccccatc tgagctgctt tccgcttttg agttgatggt caaacccttg cgtatcggtg 420 aagtgttgtg cccgaatttt gatcgttcgc tattcatctc cagcgtcgct atggctagga 480 cgttgttgtt ggcaccactc acatccaccc gaacgttgaa gcgttttgaa gaccttgtgg 540 ccgcgatcta tctaaaaact gatttcttct tagaagacga tgggccccag actgatgtct 600 cccaaagcga tgtgcccggt tatatcttcg aaccagggca acactcatcc ggttttgaac 660 ccccccctat ttgtgctaaa tgtgacttga ttttgtatca atgtccgtgt ttcgatttta 720 acgcacttcg tgagtcttgc gcagagaaaa cattctctca cgactatgtt atcgagggtc 780 tcgatggtgt cattgataac gctacgctgt tatcaaattt gggaccattt ttgttacctg 840 tccattgttc ttattcaaag accgaggacc ccgatttcgt cgttgatcct agtctagcgc 900 gacctactga tagggttgat gcacatatag ttcaagccgt ttgcgatacc actctgccta 960 cccatgttaa ctacgatgat tcctttcatc aagtctttgt agactctgct gattattcca 1020 tcgacatgga tcacgttcgg ttacgtcaat ccgatttagt agcaaaaatt ccggatggtg 1080 ggcatatgtt accggtgtta aataccggga gcggtcacaa gagagtaggt actacgaagg 1140 aggtcttaac agcaataaag aaaagaaatg ctgatgtccc tgagcttggt gactctgtta 1200 atctgtcacg cctgagcaaa gcagtagccg aacggtttcg tctctcgtat atgaatgttg 1260 acgctttggc taagagtaac tttgttaatg ttgtcggtga ttttcacgct tacatgcaaa 1320 aatggcaatc ttctggactt tcttatgatg atcttcctga tcttcacgcg gagaatttac 1380 agttttatga tcacatgatt aagtccgatg ttaagccagt tgtcaccgac acgttgaacg 1440 tcgacagacc tgtcccagct actattacat ttcacaaaaa gaccataaca tcccagttct 1500 caccgttgtt tatatctctg tttgagagat tccagagatg ccttcgggaa cgtattgttc 1560 tgcccgttgg taagaattcc tcccttgaga tgactgtttt ttcagtcttt aacaaacatt 1620 gtcttgaaat tgatttatct aaattcgaca aatctcaagg tgagttccac cttatgattc 1680 aagagcacat tctcaacgat cttggttgcc cagcacccgt caccaaatgg tggtgtgact 1740 ttcataggtt ttcctatatt aaagacaaac gtgctggggt tggaatgccc atcagctttc 1800 aacgccgtac tggtgacgct ttcacctatt ttggtaatac tattgtcacg atggctgagt 1860 ttgcttggtg ttatgacact gatcaatttg accgattgct cttttctggt gatgattctc 1920 tggctttttc taagctccca cctgttggag atcccagtaa gtttacaact ttattcaaca 1980 tggaagctaa ggtgatggaa cctgcagtac cttacatttg ttcgaagttt ctactctctg 2040 atgagtttgg taatacgttt tcagtccccg acccactacg tgaaatccag cggttaggta 2100 ccaagaagat accgtattcg gacaacaacg atttcttgtt cgctcatttt atgagttttg 2160 ttgacaggct gaagtttatg gacaggatgt cgcagtcctg tattgatcaa ttgtccattt 2220 tcttcgagtt gaaatacaag aagtccggga acgaagccgc ccaagttttg ggcgcgttta 2280 agaagtacac cgccaatttt aacgcctata aggagcttta ctactctgac cgtcaacaat 2340 gtgacttggt caatacgttt tgtatatctg agttccaggt gattcgtcgc actaccgtta 2400 agaagaagaa gaatggatgt gttgacagta gtggtgtcga ccgccgacct ccacctagcc 2460 catttgcagg aggtgaaacg tcgaagacga aggtctcacg tcagaaaccg gcgagcgagg 2520 ggttacaaaa gtcccagcga gagagcgcga tctatagcga gatttttcca gatgttacca 2580 ttccacggag tagatcccgt ggattggttt cctgatgtcg ttcgctctcc gtccgttacc 2640 agccttgttt cttatgaatc ttttgatgat accgattggt ttgctggtaa cgaatgggcc 2700 gaagggtcgt tttgatttcc gacccttcgt cgtccgaaga cgttaaacta cactctcttt 2760 attgcgagtg ctgagttggt agttttgctt taaactatct gaagtcgcta aatccattac 2820 tggttgcgaa cgggttgtcc atccagctta cggctaaaat ggtcagtcat gccccagagg 2880 catgccgaca ccctacaggg ttgtcgaggt acccttgaaa tcatctccta gatttcttcg 2940 gaagggcttc gtgagaagct cgtgcacggt aatacactga tattaccaag agtgcgggta 3000 tcgcctgtgg ttttccacag gttctccata aggagacca 3039 //